Wall clock time and date at job start Tue Mar 31 2020 11:20:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.29819 * 118.55271 * 2 1
4 4 C 1.50144 * 123.28119 * 180.10868 * 3 2 1
5 5 N 1.46837 * 110.27810 * 343.21228 * 4 3 2
6 6 C 1.46900 * 111.00217 * 287.53424 * 5 4 3
7 7 C 1.52994 * 109.47252 * 293.95503 * 6 5 4
8 8 N 1.46498 * 109.47269 * 179.97438 * 7 6 5
9 9 C 1.34778 * 119.99874 * 180.02562 * 8 7 6
10 10 O 1.21583 * 120.00535 * 359.97438 * 9 8 7
11 11 C 1.47649 * 119.99760 * 180.02562 * 9 8 7
12 12 C 1.40014 * 119.89465 * 359.72271 * 11 9 8
13 13 C 1.36314 * 120.10346 * 179.72133 * 12 11 9
14 14 C 1.40888 * 119.89230 * 0.57169 * 13 12 11
15 15 C 1.41109 * 120.10189 * 179.67720 * 14 13 12
16 16 H 1.08005 * 120.00189 * 204.65638 * 15 14 13
17 17 C 1.40224 * 120.00177 * 24.65645 * 15 14 13
18 18 N 1.30640 * 120.00172 * 17.85974 * 17 15 14
19 19 Si 1.86803 * 120.00068 * 197.86622 * 17 15 14
20 20 H 1.48501 * 109.47117 * 89.99838 * 19 17 15
21 21 H 1.48496 * 109.46989 * 209.99774 * 19 17 15
22 22 H 1.48498 * 109.46935 * 329.99917 * 19 17 15
23 23 C 1.40888 * 119.79472 * 359.70393 * 14 13 12
24 24 C 1.36316 * 119.88815 * 359.97438 * 23 14 13
25 25 C 1.47240 * 110.20462 * 50.92414 * 5 4 3
26 26 C 1.50306 * 118.55061 * 180.23529 * 2 1 3
27 27 H 1.09000 * 109.46939 * 359.97438 * 1 2 3
28 28 H 1.09000 * 109.46428 * 119.99864 * 1 2 3
29 29 H 1.08997 * 109.47051 * 239.99571 * 1 2 3
30 30 H 1.08004 * 118.36018 * 0.39788 * 3 2 1
31 31 H 1.09009 * 109.33382 * 103.46405 * 4 3 2
32 32 H 1.09004 * 109.34012 * 223.12615 * 4 3 2
33 33 H 1.09004 * 109.46940 * 53.95120 * 6 5 4
34 34 H 1.09000 * 109.47035 * 173.95178 * 6 5 4
35 35 H 1.08998 * 109.47030 * 300.00082 * 7 6 5
36 36 H 1.09000 * 109.47366 * 59.99878 * 7 6 5
37 37 H 0.97003 * 120.00111 * 359.97438 * 8 7 6
38 38 H 1.07997 * 119.94313 * 359.97438 * 12 11 9
39 39 H 1.08003 * 120.05375 * 180.25158 * 13 12 11
40 40 H 0.97003 * 120.00399 * 179.97438 * 18 17 15
41 41 H 1.07994 * 120.05355 * 179.97438 * 23 14 13
42 42 H 1.08000 * 119.94490 * 179.97438 * 24 23 14
43 43 H 1.09003 * 109.63756 * 50.89366 * 25 5 4
44 44 H 1.09004 * 109.63682 * 171.50196 * 25 5 4
45 45 H 1.09001 * 109.56227 * 43.51499 * 26 2 1
46 46 H 1.08998 * 109.24878 * 283.69662 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1276 1.1403 0.0000
4 6 3.6239 1.2641 -0.0024
5 7 4.2404 -0.0085 0.3933
6 6 4.0576 -0.2581 1.8293
7 6 4.8343 0.7876 2.6317
8 7 4.6514 0.5390 4.0638
9 6 5.2470 1.3412 4.9684
10 8 5.9363 2.2709 4.5960
11 6 5.0631 1.0903 6.4118
12 6 4.2650 0.0219 6.8383
13 6 4.0969 -0.2170 8.1697
14 6 4.7181 0.6204 9.1173
15 6 4.5416 0.3811 10.4967
16 1 4.6554 1.1895 11.2039
17 6 4.2184 -0.9061 10.9494
18 7 4.4177 -1.9398 10.1758
19 14 3.5027 -1.1428 12.6585
20 1 2.0213 -1.0645 12.5901
21 1 3.9044 -2.4725 13.1835
22 1 4.0134 -0.0795 13.5606
23 6 5.5156 1.6977 8.6833
24 6 5.6831 1.9247 7.3496
25 6 3.6875 -1.1125 -0.4088
26 6 2.2254 -1.3203 -0.0054
27 1 -0.3633 1.0277 0.0005
28 1 -0.3632 -0.5138 -0.8900
29 1 -0.3633 -0.5139 0.8899
30 1 1.5380 2.0452 0.0066
31 1 3.9622 1.5334 -1.0030
32 1 3.9230 2.0413 0.7009
33 1 2.9981 -0.1931 2.0774
34 1 4.4279 -1.2534 2.0751
35 1 5.8937 0.7226 2.3836
36 1 4.4640 1.7829 2.3859
37 1 4.1012 -0.2025 4.3610
38 1 3.7850 -0.6162 6.1111
39 1 3.4843 -1.0438 8.4978
40 1 4.1944 -2.8303 10.4890
41 1 5.9934 2.3424 9.4060
42 1 6.2939 2.7505 7.0159
43 1 3.7430 -0.8596 -1.4677
44 1 4.2535 -2.0241 -0.2168
45 1 1.7456 -1.9939 -0.7154
46 1 2.1831 -1.7565 0.9926
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000349968045.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:20:17
Heat of formation + Delta-G solvation = -8.020004 kcal
Electronic energy + Delta-G solvation = -25107.981187 eV
Core-core repulsion = 21575.743834 eV
Total energy + Delta-G solvation = -3532.237353 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.10510 -38.95193 -37.11583 -35.15132 -33.86911 -33.68938 -31.26972 -30.54588
-29.46868 -29.24239 -27.20991 -25.79785 -24.18835 -23.40858 -21.82965 -21.36023
-20.82863 -19.61005 -17.69050 -17.52298 -16.73886 -16.20103 -15.93459 -15.50833
-15.21051 -15.04560 -14.46290 -14.37075 -14.02549 -13.77407 -13.66264 -13.35681
-13.18064 -12.90770 -12.72170 -12.45750 -12.18784 -12.15767 -12.05349 -11.91961
-11.79315 -11.52421 -11.37289 -11.29596 -11.05147 -10.93812 -10.86141 -10.64056
-10.03870 -9.56001 -9.35825 -9.03889 -8.96399 -8.54600 -8.53644 -7.71998
-7.53982 -7.03712 -4.60353 1.91378 2.23986 2.91588 2.95378 2.97805
3.03782 3.44037 3.73717 3.88613 4.14467 4.43814 4.57221 4.59717
4.72930 4.86450 4.91635 5.08814 5.21917 5.25545 5.29308 5.38782
5.43767 5.50625 5.57120 5.58798 5.60187 5.64050 5.74822 5.88685
6.03295 6.04240 6.21049 6.28262 6.32637 6.63253 6.76925 6.78472
6.82738 6.84269 6.97413 7.07824 7.13733 7.43733 7.65652 7.79372
7.86121 8.07222 8.25547 8.39918 8.63173 8.75429 9.10084 9.88339
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.018096 B = 0.002518 C = 0.002333
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1546.971420 B =11117.883128 C =11996.460328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.128 4.128
3 C -0.190 4.190
4 C 0.073 3.927
5 N -0.523 5.523
6 C 0.039 3.961
7 C 0.128 3.872
8 N -0.742 5.742
9 C 0.573 3.427
10 O -0.575 6.575
11 C -0.283 4.283
12 C -0.063 4.063
13 C -0.178 4.178
14 C 0.128 3.872
15 C -0.443 4.443
16 H 0.085 0.915
17 C 0.074 3.926
18 N -0.772 5.772
19 Si 0.914 3.086
20 H -0.265 1.265
21 H -0.275 1.275
22 H -0.259 1.259
23 C -0.239 4.239
24 C -0.022 4.022
25 C 0.054 3.946
26 C -0.122 4.122
27 H 0.060 0.940
28 H 0.063 0.937
29 H 0.064 0.936
30 H 0.108 0.892
31 H 0.088 0.912
32 H 0.090 0.910
33 H 0.047 0.953
34 H 0.079 0.921
35 H 0.069 0.931
36 H 0.060 0.940
37 H 0.396 0.604
38 H 0.088 0.912
39 H 0.120 0.880
40 H 0.286 0.714
41 H 0.098 0.902
42 H 0.101 0.899
43 H 0.078 0.922
44 H 0.082 0.918
45 H 0.076 0.924
46 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.050 -2.444 -16.354 17.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.128 4.128
3 C -0.209 4.209
4 C -0.054 4.054
5 N -0.246 5.246
6 C -0.089 4.089
7 C 0.003 3.997
8 N -0.395 5.395
9 C 0.367 3.633
10 O -0.457 6.457
11 C -0.288 4.288
12 C -0.082 4.082
13 C -0.198 4.198
14 C 0.125 3.875
15 C -0.471 4.471
16 H 0.103 0.897
17 C -0.147 4.147
18 N -0.395 5.395
19 Si 0.737 3.263
20 H -0.190 1.190
21 H -0.200 1.200
22 H -0.183 1.183
23 C -0.259 4.259
24 C -0.041 4.041
25 C -0.074 4.074
26 C -0.161 4.161
27 H 0.079 0.921
28 H 0.082 0.918
29 H 0.083 0.917
30 H 0.126 0.874
31 H 0.106 0.894
32 H 0.108 0.892
33 H 0.065 0.935
34 H 0.098 0.902
35 H 0.087 0.913
36 H 0.078 0.922
37 H 0.231 0.769
38 H 0.106 0.894
39 H 0.138 0.862
40 H 0.097 0.903
41 H 0.116 0.884
42 H 0.119 0.881
43 H 0.097 0.903
44 H 0.100 0.900
45 H 0.095 0.905
46 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -6.031 -2.022 -16.733 17.901
hybrid contribution -1.607 -0.710 1.010 2.026
sum -7.638 -2.732 -15.722 17.692
Atomic orbital electron populations
1.20913 0.92328 1.02340 1.01957 1.20952 0.95888 0.94794 1.01170
1.22797 0.97907 0.97708 1.02502 1.21226 0.89220 0.92718 1.02282
1.62604 1.55702 1.02541 1.03706 1.22307 0.99188 0.99769 0.87620
1.21095 1.00526 0.97733 0.80309 1.45817 1.54101 1.34266 1.05364
1.18561 0.77669 0.80584 0.86475 1.90633 1.41215 1.31923 1.81896
1.18906 1.14606 1.05084 0.90204 1.20467 0.96825 0.95071 0.95838
1.20972 1.04294 1.03065 0.91425 1.17788 0.86615 0.89648 0.93437
1.19855 1.39228 0.94918 0.93084 0.89703 1.26096 0.92817 0.95529
1.00241 1.69743 1.31967 1.00125 1.37685 0.86208 0.80159 0.78740
0.81161 1.18954 1.20025 1.18275 1.20721 1.06761 1.04092 0.94277
1.20364 0.95236 0.95890 0.92623 1.22276 0.92231 0.94802 0.98130
1.21058 0.96961 0.95380 1.02686 0.92105 0.91827 0.91702 0.87443
0.89437 0.89153 0.93476 0.90207 0.91265 0.92168 0.76946 0.89400
0.86215 0.90253 0.88368 0.88087 0.90338 0.90008 0.90521 0.90534
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.92 10.02 36.01 0.36 -0.56 16
2 C -0.13 -1.16 5.23 -100.92 -0.53 -1.69 16
3 C -0.19 -1.81 8.99 -35.96 -0.32 -2.13 16
4 C 0.07 0.72 5.83 -5.28 -0.03 0.69 16
5 N -0.52 -5.44 5.03 -236.11 -1.19 -6.63 16
6 C 0.04 0.45 4.18 -3.83 -0.02 0.43 16
7 C 0.13 1.87 5.62 -4.05 -0.02 1.84 16
8 N -0.74 -12.62 5.50 -61.32 -0.34 -12.96 16
9 C 0.57 12.40 7.76 -12.42 -0.10 12.30 16
10 O -0.57 -13.98 16.32 5.29 0.09 -13.90 16
11 C -0.28 -6.54 5.89 -104.73 -0.62 -7.16 16
12 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16
13 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16
14 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16
15 C -0.44 -11.03 9.04 -37.75 -0.34 -11.37 16
16 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16
17 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16
18 N -0.77 -18.45 10.95 55.56 0.61 -17.84 16
19 Si 0.91 17.24 29.60 -169.99 -5.03 12.21 16
20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16
21 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16
22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16
23 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16
24 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16
25 C 0.05 0.45 6.03 -3.59 -0.02 0.43 16
26 C -0.12 -1.00 5.27 -28.03 -0.15 -1.15 16
27 H 0.06 0.46 7.62 -51.93 -0.40 0.06 16
28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.11 0.97 7.63 -52.48 -0.40 0.57 16
31 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16
32 H 0.09 0.97 6.00 -51.93 -0.31 0.65 16
33 H 0.05 0.54 5.99 -51.93 -0.31 0.23 16
34 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16
35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
36 H 0.06 0.92 6.32 -51.93 -0.33 0.59 16
37 H 0.40 5.98 6.47 -40.82 -0.26 5.72 16
38 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16
39 H 0.12 2.96 6.16 -52.48 -0.32 2.64 16
40 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16
41 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16
42 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16
43 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16
44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16
45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
46 H 0.08 0.66 7.13 -51.93 -0.37 0.29 16
LS Contribution 367.30 15.07 5.54 5.54
Total: -1.00 -28.53 367.30 -11.06 -39.59
By element:
Atomic # 1 Polarization: 18.39 SS G_CDS: -6.79 Total: 11.60 kcal
Atomic # 6 Polarization: -13.67 SS G_CDS: -3.94 Total: -17.61 kcal
Atomic # 7 Polarization: -36.51 SS G_CDS: -0.92 Total: -37.43 kcal
Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.90 kcal
Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -28.53 -11.06 -39.59 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000349968045.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.570 kcal
(2) G-P(sol) polarization free energy of solvation -28.533 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.037 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds