Wall clock time and date at job start Tue Mar 31 2020 11:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.29819 * 118.55271 * 2 1 4 4 C 1.50144 * 123.28119 * 180.10868 * 3 2 1 5 5 N 1.46837 * 110.27810 * 343.21228 * 4 3 2 6 6 C 1.46900 * 111.00217 * 287.53424 * 5 4 3 7 7 C 1.52994 * 109.47252 * 293.95503 * 6 5 4 8 8 N 1.46498 * 109.47269 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99874 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00535 * 359.97438 * 9 8 7 11 11 C 1.47649 * 119.99760 * 180.02562 * 9 8 7 12 12 C 1.40014 * 119.89465 * 359.72271 * 11 9 8 13 13 C 1.36314 * 120.10346 * 179.72133 * 12 11 9 14 14 C 1.40888 * 119.89230 * 0.57169 * 13 12 11 15 15 C 1.41109 * 120.10189 * 179.67720 * 14 13 12 16 16 H 1.08005 * 120.00189 * 204.65638 * 15 14 13 17 17 C 1.40224 * 120.00177 * 24.65645 * 15 14 13 18 18 N 1.30640 * 120.00172 * 17.85974 * 17 15 14 19 19 Si 1.86803 * 120.00068 * 197.86622 * 17 15 14 20 20 H 1.48501 * 109.47117 * 89.99838 * 19 17 15 21 21 H 1.48496 * 109.46989 * 209.99774 * 19 17 15 22 22 H 1.48498 * 109.46935 * 329.99917 * 19 17 15 23 23 C 1.40888 * 119.79472 * 359.70393 * 14 13 12 24 24 C 1.36316 * 119.88815 * 359.97438 * 23 14 13 25 25 C 1.47240 * 110.20462 * 50.92414 * 5 4 3 26 26 C 1.50306 * 118.55061 * 180.23529 * 2 1 3 27 27 H 1.09000 * 109.46939 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46428 * 119.99864 * 1 2 3 29 29 H 1.08997 * 109.47051 * 239.99571 * 1 2 3 30 30 H 1.08004 * 118.36018 * 0.39788 * 3 2 1 31 31 H 1.09009 * 109.33382 * 103.46405 * 4 3 2 32 32 H 1.09004 * 109.34012 * 223.12615 * 4 3 2 33 33 H 1.09004 * 109.46940 * 53.95120 * 6 5 4 34 34 H 1.09000 * 109.47035 * 173.95178 * 6 5 4 35 35 H 1.08998 * 109.47030 * 300.00082 * 7 6 5 36 36 H 1.09000 * 109.47366 * 59.99878 * 7 6 5 37 37 H 0.97003 * 120.00111 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.94313 * 359.97438 * 12 11 9 39 39 H 1.08003 * 120.05375 * 180.25158 * 13 12 11 40 40 H 0.97003 * 120.00399 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.05355 * 179.97438 * 23 14 13 42 42 H 1.08000 * 119.94490 * 179.97438 * 24 23 14 43 43 H 1.09003 * 109.63756 * 50.89366 * 25 5 4 44 44 H 1.09004 * 109.63682 * 171.50196 * 25 5 4 45 45 H 1.09001 * 109.56227 * 43.51499 * 26 2 1 46 46 H 1.08998 * 109.24878 * 283.69662 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0024 5 7 4.2404 -0.0085 0.3933 6 6 4.0576 -0.2581 1.8293 7 6 4.8343 0.7876 2.6317 8 7 4.6514 0.5390 4.0638 9 6 5.2470 1.3412 4.9684 10 8 5.9363 2.2709 4.5960 11 6 5.0631 1.0903 6.4118 12 6 4.2650 0.0219 6.8383 13 6 4.0969 -0.2170 8.1697 14 6 4.7181 0.6204 9.1173 15 6 4.5416 0.3811 10.4967 16 1 4.6554 1.1895 11.2039 17 6 4.2184 -0.9061 10.9494 18 7 4.4177 -1.9398 10.1758 19 14 3.5027 -1.1428 12.6585 20 1 2.0213 -1.0645 12.5901 21 1 3.9044 -2.4725 13.1835 22 1 4.0134 -0.0795 13.5606 23 6 5.5156 1.6977 8.6833 24 6 5.6831 1.9247 7.3496 25 6 3.6875 -1.1125 -0.4088 26 6 2.2254 -1.3203 -0.0054 27 1 -0.3633 1.0277 0.0005 28 1 -0.3632 -0.5138 -0.8900 29 1 -0.3633 -0.5139 0.8899 30 1 1.5380 2.0452 0.0066 31 1 3.9622 1.5334 -1.0030 32 1 3.9230 2.0413 0.7009 33 1 2.9981 -0.1931 2.0774 34 1 4.4279 -1.2534 2.0751 35 1 5.8937 0.7226 2.3836 36 1 4.4640 1.7829 2.3859 37 1 4.1012 -0.2025 4.3610 38 1 3.7850 -0.6162 6.1111 39 1 3.4843 -1.0438 8.4978 40 1 4.1944 -2.8303 10.4890 41 1 5.9934 2.3424 9.4060 42 1 6.2939 2.7505 7.0159 43 1 3.7430 -0.8596 -1.4677 44 1 4.2535 -2.0241 -0.2168 45 1 1.7456 -1.9939 -0.7154 46 1 2.1831 -1.7565 0.9926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349968045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:17 Heat of formation + Delta-G solvation = -8.020004 kcal Electronic energy + Delta-G solvation = -25107.981187 eV Core-core repulsion = 21575.743834 eV Total energy + Delta-G solvation = -3532.237353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.10510 -38.95193 -37.11583 -35.15132 -33.86911 -33.68938 -31.26972 -30.54588 -29.46868 -29.24239 -27.20991 -25.79785 -24.18835 -23.40858 -21.82965 -21.36023 -20.82863 -19.61005 -17.69050 -17.52298 -16.73886 -16.20103 -15.93459 -15.50833 -15.21051 -15.04560 -14.46290 -14.37075 -14.02549 -13.77407 -13.66264 -13.35681 -13.18064 -12.90770 -12.72170 -12.45750 -12.18784 -12.15767 -12.05349 -11.91961 -11.79315 -11.52421 -11.37289 -11.29596 -11.05147 -10.93812 -10.86141 -10.64056 -10.03870 -9.56001 -9.35825 -9.03889 -8.96399 -8.54600 -8.53644 -7.71998 -7.53982 -7.03712 -4.60353 1.91378 2.23986 2.91588 2.95378 2.97805 3.03782 3.44037 3.73717 3.88613 4.14467 4.43814 4.57221 4.59717 4.72930 4.86450 4.91635 5.08814 5.21917 5.25545 5.29308 5.38782 5.43767 5.50625 5.57120 5.58798 5.60187 5.64050 5.74822 5.88685 6.03295 6.04240 6.21049 6.28262 6.32637 6.63253 6.76925 6.78472 6.82738 6.84269 6.97413 7.07824 7.13733 7.43733 7.65652 7.79372 7.86121 8.07222 8.25547 8.39918 8.63173 8.75429 9.10084 9.88339 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002518 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.971420 B =11117.883128 C =11996.460328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.128 4.128 3 C -0.190 4.190 4 C 0.073 3.927 5 N -0.523 5.523 6 C 0.039 3.961 7 C 0.128 3.872 8 N -0.742 5.742 9 C 0.573 3.427 10 O -0.575 6.575 11 C -0.283 4.283 12 C -0.063 4.063 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.772 5.772 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.239 4.239 24 C -0.022 4.022 25 C 0.054 3.946 26 C -0.122 4.122 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 -2.444 -16.354 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.128 4.128 3 C -0.209 4.209 4 C -0.054 4.054 5 N -0.246 5.246 6 C -0.089 4.089 7 C 0.003 3.997 8 N -0.395 5.395 9 C 0.367 3.633 10 O -0.457 6.457 11 C -0.288 4.288 12 C -0.082 4.082 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.737 3.263 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.259 4.259 24 C -0.041 4.041 25 C -0.074 4.074 26 C -0.161 4.161 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.231 0.769 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.031 -2.022 -16.733 17.901 hybrid contribution -1.607 -0.710 1.010 2.026 sum -7.638 -2.732 -15.722 17.692 Atomic orbital electron populations 1.20913 0.92328 1.02340 1.01957 1.20952 0.95888 0.94794 1.01170 1.22797 0.97907 0.97708 1.02502 1.21226 0.89220 0.92718 1.02282 1.62604 1.55702 1.02541 1.03706 1.22307 0.99188 0.99769 0.87620 1.21095 1.00526 0.97733 0.80309 1.45817 1.54101 1.34266 1.05364 1.18561 0.77669 0.80584 0.86475 1.90633 1.41215 1.31923 1.81896 1.18906 1.14606 1.05084 0.90204 1.20467 0.96825 0.95071 0.95838 1.20972 1.04294 1.03065 0.91425 1.17788 0.86615 0.89648 0.93437 1.19855 1.39228 0.94918 0.93084 0.89703 1.26096 0.92817 0.95529 1.00241 1.69743 1.31967 1.00125 1.37685 0.86208 0.80159 0.78740 0.81161 1.18954 1.20025 1.18275 1.20721 1.06761 1.04092 0.94277 1.20364 0.95236 0.95890 0.92623 1.22276 0.92231 0.94802 0.98130 1.21058 0.96961 0.95380 1.02686 0.92105 0.91827 0.91702 0.87443 0.89437 0.89153 0.93476 0.90207 0.91265 0.92168 0.76946 0.89400 0.86215 0.90253 0.88368 0.88087 0.90338 0.90008 0.90521 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.02 36.01 0.36 -0.56 16 2 C -0.13 -1.16 5.23 -100.92 -0.53 -1.69 16 3 C -0.19 -1.81 8.99 -35.96 -0.32 -2.13 16 4 C 0.07 0.72 5.83 -5.28 -0.03 0.69 16 5 N -0.52 -5.44 5.03 -236.11 -1.19 -6.63 16 6 C 0.04 0.45 4.18 -3.83 -0.02 0.43 16 7 C 0.13 1.87 5.62 -4.05 -0.02 1.84 16 8 N -0.74 -12.62 5.50 -61.32 -0.34 -12.96 16 9 C 0.57 12.40 7.76 -12.42 -0.10 12.30 16 10 O -0.57 -13.98 16.32 5.29 0.09 -13.90 16 11 C -0.28 -6.54 5.89 -104.73 -0.62 -7.16 16 12 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 14 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 15 C -0.44 -11.03 9.04 -37.75 -0.34 -11.37 16 16 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 17 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 18 N -0.77 -18.45 10.95 55.56 0.61 -17.84 16 19 Si 0.91 17.24 29.60 -169.99 -5.03 12.21 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 24 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 25 C 0.05 0.45 6.03 -3.59 -0.02 0.43 16 26 C -0.12 -1.00 5.27 -28.03 -0.15 -1.15 16 27 H 0.06 0.46 7.62 -51.93 -0.40 0.06 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.11 0.97 7.63 -52.48 -0.40 0.57 16 31 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.09 0.97 6.00 -51.93 -0.31 0.65 16 33 H 0.05 0.54 5.99 -51.93 -0.31 0.23 16 34 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.92 6.32 -51.93 -0.33 0.59 16 37 H 0.40 5.98 6.47 -40.82 -0.26 5.72 16 38 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16 39 H 0.12 2.96 6.16 -52.48 -0.32 2.64 16 40 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 41 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 42 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 43 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.66 7.13 -51.93 -0.37 0.29 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -28.53 367.30 -11.06 -39.59 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.79 Total: 11.60 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.94 Total: -17.61 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.92 Total: -37.43 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.53 -11.06 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349968045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.570 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds