Wall clock time and date at job start Tue Mar 31 2020 11:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.29819 * 118.55271 * 2 1 4 4 C 1.50144 * 123.28119 * 180.10868 * 3 2 1 5 5 N 1.46837 * 110.27810 * 343.21228 * 4 3 2 6 6 C 1.46900 * 111.00217 * 287.53424 * 5 4 3 7 7 C 1.52994 * 109.47252 * 293.95503 * 6 5 4 8 8 N 1.46498 * 109.47269 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99874 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00535 * 359.97438 * 9 8 7 11 11 C 1.47649 * 119.99760 * 180.02562 * 9 8 7 12 12 C 1.40014 * 119.89465 * 359.72271 * 11 9 8 13 13 C 1.36314 * 120.10346 * 179.72133 * 12 11 9 14 14 C 1.40888 * 119.89230 * 0.57169 * 13 12 11 15 15 C 1.41109 * 120.10189 * 179.67720 * 14 13 12 16 16 H 1.08005 * 120.00189 * 204.65638 * 15 14 13 17 17 C 1.40224 * 120.00177 * 24.65645 * 15 14 13 18 18 N 1.30640 * 120.00172 * 17.85974 * 17 15 14 19 19 Si 1.86803 * 120.00068 * 197.86622 * 17 15 14 20 20 H 1.48501 * 109.47117 * 89.99838 * 19 17 15 21 21 H 1.48496 * 109.46989 * 209.99774 * 19 17 15 22 22 H 1.48498 * 109.46935 * 329.99917 * 19 17 15 23 23 C 1.40888 * 119.79472 * 359.70393 * 14 13 12 24 24 C 1.36316 * 119.88815 * 359.97438 * 23 14 13 25 25 C 1.47240 * 110.20462 * 50.92414 * 5 4 3 26 26 C 1.50306 * 118.55061 * 180.23529 * 2 1 3 27 27 H 1.09000 * 109.46939 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46428 * 119.99864 * 1 2 3 29 29 H 1.08997 * 109.47051 * 239.99571 * 1 2 3 30 30 H 1.08004 * 118.36018 * 0.39788 * 3 2 1 31 31 H 1.09009 * 109.33382 * 103.46405 * 4 3 2 32 32 H 1.09004 * 109.34012 * 223.12615 * 4 3 2 33 33 H 1.09004 * 109.46940 * 53.95120 * 6 5 4 34 34 H 1.09000 * 109.47035 * 173.95178 * 6 5 4 35 35 H 1.08998 * 109.47030 * 300.00082 * 7 6 5 36 36 H 1.09000 * 109.47366 * 59.99878 * 7 6 5 37 37 H 0.97003 * 120.00111 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.94313 * 359.97438 * 12 11 9 39 39 H 1.08003 * 120.05375 * 180.25158 * 13 12 11 40 40 H 0.97003 * 120.00399 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.05355 * 179.97438 * 23 14 13 42 42 H 1.08000 * 119.94490 * 179.97438 * 24 23 14 43 43 H 1.09003 * 109.63756 * 50.89366 * 25 5 4 44 44 H 1.09004 * 109.63682 * 171.50196 * 25 5 4 45 45 H 1.09001 * 109.56227 * 43.51499 * 26 2 1 46 46 H 1.08998 * 109.24878 * 283.69662 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1276 1.1403 0.0000 4 6 3.6239 1.2641 -0.0024 5 7 4.2404 -0.0085 0.3933 6 6 4.0576 -0.2581 1.8293 7 6 4.8343 0.7876 2.6317 8 7 4.6514 0.5390 4.0638 9 6 5.2470 1.3412 4.9684 10 8 5.9363 2.2709 4.5960 11 6 5.0631 1.0903 6.4118 12 6 4.2650 0.0219 6.8383 13 6 4.0969 -0.2170 8.1697 14 6 4.7181 0.6204 9.1173 15 6 4.5416 0.3811 10.4967 16 1 4.6554 1.1895 11.2039 17 6 4.2184 -0.9061 10.9494 18 7 4.4177 -1.9398 10.1758 19 14 3.5027 -1.1428 12.6585 20 1 2.0213 -1.0645 12.5901 21 1 3.9044 -2.4725 13.1835 22 1 4.0134 -0.0795 13.5606 23 6 5.5156 1.6977 8.6833 24 6 5.6831 1.9247 7.3496 25 6 3.6875 -1.1125 -0.4088 26 6 2.2254 -1.3203 -0.0054 27 1 -0.3633 1.0277 0.0005 28 1 -0.3632 -0.5138 -0.8900 29 1 -0.3633 -0.5139 0.8899 30 1 1.5380 2.0452 0.0066 31 1 3.9622 1.5334 -1.0030 32 1 3.9230 2.0413 0.7009 33 1 2.9981 -0.1931 2.0774 34 1 4.4279 -1.2534 2.0751 35 1 5.8937 0.7226 2.3836 36 1 4.4640 1.7829 2.3859 37 1 4.1012 -0.2025 4.3610 38 1 3.7850 -0.6162 6.1111 39 1 3.4843 -1.0438 8.4978 40 1 4.1944 -2.8303 10.4890 41 1 5.9934 2.3424 9.4060 42 1 6.2939 2.7505 7.0159 43 1 3.7430 -0.8596 -1.4677 44 1 4.2535 -2.0241 -0.2168 45 1 1.7456 -1.9939 -0.7154 46 1 2.1831 -1.7565 0.9926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349968045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:16 Heat of formation + Delta-G solvation = -24.302014 kcal Electronic energy + Delta-G solvation = -25108.687228 eV Core-core repulsion = 21575.743834 eV Total energy + Delta-G solvation = -3532.943394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05024 -40.48494 -38.90017 -36.32719 -35.67119 -34.77993 -32.31264 -31.87322 -31.30718 -30.45247 -28.21558 -27.33928 -25.10613 -24.34793 -23.40101 -22.78296 -22.18976 -21.25488 -19.36746 -18.74858 -18.03725 -17.40591 -17.10532 -16.90487 -16.32511 -16.06315 -15.74987 -15.56860 -15.40550 -15.15399 -14.88576 -14.70840 -14.41256 -14.27359 -13.89379 -13.66093 -13.55168 -13.40988 -13.18822 -12.91676 -12.86212 -12.81840 -12.64405 -12.62049 -12.40424 -12.34054 -11.92861 -11.76621 -11.58242 -11.36791 -11.12678 -10.74171 -10.08694 -9.71037 -9.57486 -9.40583 -9.31878 -8.79392 -6.48383 0.43923 1.15030 1.21755 1.39244 1.43711 1.53621 2.12490 2.17749 2.23288 2.78481 3.12067 3.68941 3.72495 3.87914 3.89790 4.09433 4.13382 4.19698 4.30508 4.31650 4.40555 4.44797 4.57322 4.63387 4.67079 4.72933 4.79703 4.82248 4.91781 4.92709 4.98135 4.99761 5.03089 5.04367 5.12752 5.15997 5.29996 5.51339 5.58829 5.61703 5.82042 5.92594 5.94499 5.99359 6.02244 6.10267 6.22684 6.53860 6.69583 6.77147 6.88936 7.43138 8.15861 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002518 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.971420 B =11117.883128 C =11996.460328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.130 4.130 3 C -0.204 4.204 4 C 0.074 3.926 5 N -0.533 5.533 6 C 0.053 3.947 7 C 0.130 3.870 8 N -0.723 5.723 9 C 0.572 3.428 10 O -0.606 6.606 11 C -0.294 4.294 12 C -0.053 4.053 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.473 4.473 16 H 0.085 0.915 17 C 0.038 3.962 18 N -0.797 5.797 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.033 4.033 25 C 0.054 3.946 26 C -0.121 4.121 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.407 0.593 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.297 0.703 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -4.098 -16.960 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.130 4.130 3 C -0.223 4.223 4 C -0.054 4.054 5 N -0.255 5.255 6 C -0.075 4.075 7 C 0.006 3.994 8 N -0.376 5.376 9 C 0.365 3.635 10 O -0.491 6.491 11 C -0.298 4.298 12 C -0.072 4.072 13 C -0.217 4.217 14 C 0.098 3.902 15 C -0.500 4.500 16 H 0.103 0.897 17 C -0.181 4.181 18 N -0.420 5.420 19 Si 0.808 3.192 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.182 1.182 23 C -0.273 4.273 24 C -0.052 4.052 25 C -0.074 4.074 26 C -0.159 4.159 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.244 0.756 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.355 -3.704 -17.380 19.233 hybrid contribution -1.177 -0.201 1.089 1.617 sum -8.533 -3.905 -16.291 18.800 Atomic orbital electron populations 1.20936 0.91521 1.02552 1.02558 1.21206 0.96662 0.95026 1.00109 1.22812 0.97664 0.98133 1.03710 1.21195 0.89630 0.92190 1.02369 1.62596 1.56357 1.03414 1.03139 1.22130 0.98535 0.98852 0.88019 1.21179 1.00400 0.98772 0.79001 1.45640 1.52669 1.33328 1.05960 1.18403 0.77790 0.80763 0.86516 1.90615 1.42788 1.33420 1.82265 1.19169 1.14428 1.05085 0.91146 1.20722 0.95860 0.94774 0.95819 1.21015 1.05048 1.03331 0.92286 1.18142 0.87280 0.90374 0.94378 1.20121 1.40775 0.96049 0.93087 0.89708 1.26920 0.92381 0.94545 1.04255 1.69757 1.31792 1.00884 1.39593 0.85104 0.79325 0.78911 0.75894 1.18300 1.18892 1.18198 1.20860 1.07256 1.04464 0.94753 1.20509 0.95575 0.96316 0.92813 1.22358 0.92503 0.94366 0.98165 1.21075 0.96705 0.95130 1.03021 0.92170 0.90597 0.91636 0.87411 0.88539 0.90543 0.93320 0.89158 0.92446 0.92831 0.75576 0.85807 0.86723 0.89143 0.87795 0.88003 0.89565 0.89069 0.88898 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 10.02 71.24 0.71 -0.91 16 2 C -0.13 -2.09 5.23 -15.39 -0.08 -2.17 16 3 C -0.20 -3.63 8.99 26.69 0.24 -3.39 16 4 C 0.07 1.38 5.83 85.39 0.50 1.88 16 5 N -0.53 -10.18 5.03 -900.92 -4.53 -14.71 16 6 C 0.05 1.11 4.18 86.30 0.36 1.47 16 7 C 0.13 3.69 5.62 86.38 0.49 4.17 16 8 N -0.72 -23.71 5.50 -466.17 -2.57 -26.28 16 9 C 0.57 24.58 7.76 86.73 0.67 25.25 16 10 O -0.61 -29.73 16.32 -3.98 -0.06 -29.79 16 11 C -0.29 -13.55 5.89 -19.93 -0.12 -13.67 16 12 C -0.05 -2.31 9.47 22.25 0.21 -2.10 16 13 C -0.20 -9.72 8.63 22.47 0.19 -9.53 16 14 C 0.10 5.28 5.58 -21.28 -0.12 5.16 16 15 C -0.47 -23.88 9.04 23.46 0.21 -23.66 16 16 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 17 C 0.04 1.76 5.14 85.35 0.44 2.20 16 18 N -0.80 -37.78 10.95 21.87 0.24 -37.54 16 19 Si 0.99 34.56 29.60 68.60 2.03 36.59 16 20 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 21 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 22 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 23 C -0.25 -12.71 9.73 22.47 0.22 -12.50 16 24 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 25 C 0.05 0.78 6.03 86.27 0.52 1.30 16 26 C -0.12 -1.66 5.27 29.75 0.16 -1.50 16 27 H 0.06 0.82 7.62 -2.39 -0.02 0.80 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 1.86 7.63 -2.91 -0.02 1.84 16 31 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.08 1.62 6.00 -2.39 -0.01 1.61 16 33 H 0.05 1.02 5.99 -2.38 -0.01 1.01 16 34 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.62 6.32 -2.39 -0.02 1.60 16 37 H 0.41 11.42 6.47 -92.71 -0.60 10.82 16 38 H 0.12 4.37 6.37 -2.91 -0.02 4.35 16 39 H 0.11 5.69 6.16 -2.91 -0.02 5.67 16 40 H 0.30 12.48 8.29 -92.71 -0.77 11.71 16 41 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 43 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.08 7.13 -2.39 -0.02 1.06 16 Total: -1.00 -61.51 367.30 0.31 -61.19 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: 0.39 Total: 39.91 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 4.82 Total: -29.39 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -6.86 Total: -78.52 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.06 Total: -29.79 kcal Atomic # 14 Polarization: 34.56 SS G_CDS: 2.03 Total: 36.59 kcal Total: -61.51 0.31 -61.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349968045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.891 kcal (2) G-P(sol) polarization free energy of solvation -61.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds