Wall clock time and date at job start Tue Mar 31 2020 11:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 C 1.53000 * 109.47140 * 239.99458 * 2 1 3 5 5 C 1.50703 * 109.46981 * 60.00496 * 4 2 1 6 6 H 1.07994 * 120.00049 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00159 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99724 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00367 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46925 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47318 * 119.99596 * 9 7 5 12 12 H 1.48497 * 109.47235 * 240.00129 * 9 7 5 13 13 C 1.53003 * 109.47157 * 119.99891 * 2 1 3 14 14 N 1.46505 * 109.46973 * 299.99741 * 13 2 1 15 15 C 1.34774 * 119.99960 * 179.97438 * 14 13 2 16 16 O 1.21580 * 120.00168 * 354.92550 * 15 14 13 17 17 N 1.34781 * 119.99838 * 174.92472 * 15 14 13 18 18 C 1.46378 * 119.64543 * 5.06799 * 17 15 14 19 19 C 1.53234 * 109.48772 * 114.92082 * 18 17 15 20 20 S 1.81737 * 108.80262 * 57.65121 * 19 18 17 21 21 C 1.81745 * 102.30559 * 305.46430 * 20 19 18 22 22 C 1.53003 * 109.58434 * 174.33445 * 21 20 19 23 23 C 1.52999 * 109.58162 * 294.74173 * 21 20 19 24 24 C 1.46372 * 119.64614 * 184.80233 * 17 15 14 25 25 H 1.08994 * 109.47372 * 300.00070 * 1 2 3 26 26 H 1.08999 * 109.47188 * 60.00270 * 1 2 3 27 27 H 1.09003 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47157 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46707 * 299.99647 * 3 2 1 30 30 H 1.08997 * 109.47545 * 59.99736 * 3 2 1 31 31 H 1.09001 * 109.46880 * 180.02562 * 4 2 1 32 32 H 1.08993 * 109.47433 * 300.00236 * 4 2 1 33 33 H 0.97006 * 119.99792 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47562 * 59.99660 * 13 2 1 35 35 H 1.09001 * 109.47392 * 180.02562 * 13 2 1 36 36 H 0.96998 * 119.99598 * 0.02562 * 14 13 2 37 37 H 1.09002 * 109.46321 * 234.91980 * 18 17 15 38 38 H 1.09001 * 109.47033 * 354.90536 * 18 17 15 39 39 H 1.09003 * 109.58547 * 177.45131 * 19 18 17 40 40 H 1.09009 * 109.57854 * 297.71642 * 19 18 17 41 41 H 1.08999 * 109.46655 * 59.99399 * 22 21 20 42 42 H 1.08992 * 109.46997 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46828 * 300.00332 * 22 21 20 44 44 H 1.09008 * 109.47339 * 60.00419 * 23 21 20 45 45 H 1.09000 * 109.47115 * 180.02562 * 23 21 20 46 46 H 1.09001 * 109.47349 * 300.00251 * 23 21 20 47 47 H 1.09004 * 109.46946 * 5.08492 * 24 17 15 48 48 H 1.09001 * 109.47183 * 125.07700 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3807 7 6 1.8712 -0.4818 -3.7319 8 7 2.6281 -1.5505 -3.8525 9 14 1.2481 0.3983 -5.2572 10 1 0.4217 1.5642 -4.8531 11 1 2.4028 0.8659 -6.0654 12 1 0.4238 -0.5356 -6.0656 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4455 15 6 1.8768 -0.4912 3.6696 16 8 2.4972 -1.5307 3.7829 17 7 1.5143 0.2004 4.7681 18 6 0.6732 1.3903 4.6296 19 6 -0.6818 1.1393 5.2998 20 16 -0.4024 0.7126 7.0442 21 6 0.7567 -0.6817 6.9210 22 6 1.2195 -1.0892 8.3213 23 6 0.0647 -1.8654 6.2420 24 6 1.9612 -0.2497 6.0873 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7217 -1.2489 32 1 1.6767 -1.7490 -1.2491 33 1 2.8630 -1.8816 -4.7335 34 1 1.6766 -1.7489 1.2494 35 1 3.1300 -0.7209 1.2495 36 1 0.9937 0.7579 2.3563 37 1 1.1630 2.2389 5.1072 38 1 0.5210 1.6067 3.5722 39 1 -1.2928 2.0399 5.2373 40 1 -1.1911 0.3168 4.7974 41 1 0.3565 -1.3868 8.9168 42 1 1.9141 -1.9256 8.2453 43 1 1.7172 -0.2454 8.7993 44 1 -0.2580 -1.5732 5.2427 45 1 0.7613 -2.7007 6.1695 46 1 -0.8023 -2.1658 6.8305 47 1 2.6415 -1.0936 5.9720 48 1 2.4768 0.5660 6.5941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358709157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:53 Heat of formation + Delta-G solvation = -40.250744 kcal Electronic energy + Delta-G solvation = -25405.347571 eV Core-core repulsion = 22007.156540 eV Total energy + Delta-G solvation = -3398.191031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.53165 -37.83602 -36.67698 -35.07915 -33.46401 -32.04569 -30.91874 -27.66747 -27.54360 -26.95009 -26.55945 -25.47393 -23.72389 -22.75290 -20.97750 -19.86239 -19.05978 -17.65727 -16.75174 -16.39547 -16.09882 -15.65000 -15.29777 -14.80108 -14.56784 -14.35681 -14.17074 -14.06556 -13.72001 -13.41703 -13.15473 -12.97872 -12.78723 -12.47644 -12.40798 -12.20409 -12.14511 -12.08728 -11.66500 -11.50283 -11.19375 -11.09998 -11.05799 -10.86025 -10.68211 -10.43606 -10.26985 -10.06460 -10.00396 -9.91692 -9.24278 -9.10104 -8.94690 -8.63253 -8.38469 -7.94317 -6.02307 -4.03697 1.38727 2.16581 2.57699 3.22100 3.28281 3.36545 3.38531 3.84533 4.26805 4.42977 4.46263 4.55172 4.68488 4.71104 4.82576 5.17196 5.21027 5.32556 5.33318 5.37625 5.44174 5.48682 5.51173 5.54860 5.59993 5.63102 5.70243 5.76594 5.98264 6.11787 6.14165 6.20953 6.30892 6.36457 6.54111 6.58623 6.72169 6.84063 7.02321 7.03507 7.09875 7.61829 7.73603 7.95838 7.98593 8.37782 8.64494 9.01297 9.59635 11.09162 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.002795 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.437035 B =10016.898506 C =10420.291215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.145 3.855 14 N -0.736 5.736 15 C 0.703 3.297 16 O -0.586 6.586 17 N -0.635 5.635 18 C 0.112 3.888 19 C -0.104 4.104 20 S -0.253 6.253 21 C -0.042 4.042 22 C -0.126 4.126 23 C -0.134 4.134 24 C 0.138 3.862 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.393 0.607 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 5.846 22.456 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.022 3.978 14 N -0.394 5.394 15 C 0.404 3.596 16 O -0.463 6.463 17 N -0.373 5.373 18 C -0.014 4.014 19 C -0.253 4.253 20 S -0.025 6.025 21 C -0.153 4.153 22 C -0.185 4.185 23 C -0.193 4.193 24 C 0.012 3.988 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.231 0.769 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.124 0.876 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.199 5.464 23.285 24.476 hybrid contribution -0.236 0.307 -2.110 2.145 sum -5.435 5.772 21.175 22.610 Atomic orbital electron populations 1.21747 0.95322 1.01158 1.00046 1.20917 0.95435 0.95867 0.95063 1.21752 1.00596 0.95881 1.00069 1.19087 0.96390 0.95236 0.89395 1.21208 1.31131 1.12075 0.90492 0.92217 1.25016 0.95313 0.95078 0.99102 1.69978 1.36922 1.23071 1.23355 0.86596 0.78614 0.79670 0.83459 1.19811 1.21119 1.21129 1.21529 0.98624 0.95785 0.81883 1.45615 1.55958 1.33218 1.04585 1.15943 0.79937 0.83095 0.80615 1.90905 1.46495 1.23434 1.85491 1.47086 1.55107 1.29129 1.05953 1.21662 0.89717 0.88478 1.01562 1.23885 1.00487 1.05849 0.95102 1.86801 1.61535 1.43172 1.10981 1.23106 0.96696 0.95687 0.99780 1.21612 1.01978 1.02122 0.92785 1.21988 1.00499 0.96480 1.00345 1.21467 0.94681 1.01503 0.81117 0.95561 0.91387 0.93331 0.93304 0.91396 0.95518 0.96301 0.96308 0.93074 0.91898 0.91997 0.76909 0.89683 0.89259 0.86657 0.89340 0.91424 0.90693 0.91482 0.92490 0.91316 0.91810 0.87604 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.85 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.37 7.65 -34.44 -0.26 -13.63 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.15 2.54 4.57 -4.04 -0.02 2.52 16 14 N -0.74 -10.60 4.86 -65.22 -0.32 -10.92 16 15 C 0.70 10.55 8.13 -86.92 -0.71 9.85 16 16 O -0.59 -11.01 15.67 5.29 0.08 -10.93 16 17 N -0.63 -7.19 2.14 -179.65 -0.38 -7.57 16 18 C 0.11 0.95 6.23 -3.99 -0.02 0.92 16 19 C -0.10 -0.84 6.26 37.28 0.23 -0.60 16 20 S -0.25 -2.34 21.09 -107.50 -2.27 -4.61 16 21 C -0.04 -0.38 0.88 -90.76 -0.08 -0.46 16 22 C -0.13 -0.92 8.52 37.16 0.32 -0.60 16 23 C -0.13 -1.38 8.27 37.16 0.31 -1.07 16 24 C 0.14 1.41 4.88 -4.25 -0.02 1.39 16 25 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 30 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.39 4.78 3.52 -40.82 -0.14 4.63 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.70 5.41 -51.93 -0.28 0.42 16 39 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.79 7.36 -51.92 -0.38 0.41 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.68 6.44 -51.92 -0.33 0.35 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.11 1.26 6.90 -51.93 -0.36 0.90 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -30.70 373.98 -9.74 -40.44 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.25 Total: 2.03 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 0.05 Total: -4.57 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.03 Total: -43.96 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.27 Total: -4.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.70 -9.74 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358709157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.186 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds