Wall clock time and date at job start Tue Mar 31 2020 11:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 C 1.53000 * 109.47140 * 239.99458 * 2 1 3 5 5 C 1.50703 * 109.46981 * 60.00496 * 4 2 1 6 6 H 1.07994 * 120.00049 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00159 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99724 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00367 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46925 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47318 * 119.99596 * 9 7 5 12 12 H 1.48497 * 109.47235 * 240.00129 * 9 7 5 13 13 C 1.53003 * 109.47157 * 119.99891 * 2 1 3 14 14 N 1.46505 * 109.46973 * 299.99741 * 13 2 1 15 15 C 1.34774 * 119.99960 * 179.97438 * 14 13 2 16 16 O 1.21580 * 120.00168 * 354.92550 * 15 14 13 17 17 N 1.34781 * 119.99838 * 174.92472 * 15 14 13 18 18 C 1.46378 * 119.64543 * 5.06799 * 17 15 14 19 19 C 1.53234 * 109.48772 * 114.92082 * 18 17 15 20 20 S 1.81737 * 108.80262 * 57.65121 * 19 18 17 21 21 C 1.81745 * 102.30559 * 305.46430 * 20 19 18 22 22 C 1.53003 * 109.58434 * 174.33445 * 21 20 19 23 23 C 1.52999 * 109.58162 * 294.74173 * 21 20 19 24 24 C 1.46372 * 119.64614 * 184.80233 * 17 15 14 25 25 H 1.08994 * 109.47372 * 300.00070 * 1 2 3 26 26 H 1.08999 * 109.47188 * 60.00270 * 1 2 3 27 27 H 1.09003 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47157 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46707 * 299.99647 * 3 2 1 30 30 H 1.08997 * 109.47545 * 59.99736 * 3 2 1 31 31 H 1.09001 * 109.46880 * 180.02562 * 4 2 1 32 32 H 1.08993 * 109.47433 * 300.00236 * 4 2 1 33 33 H 0.97006 * 119.99792 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47562 * 59.99660 * 13 2 1 35 35 H 1.09001 * 109.47392 * 180.02562 * 13 2 1 36 36 H 0.96998 * 119.99598 * 0.02562 * 14 13 2 37 37 H 1.09002 * 109.46321 * 234.91980 * 18 17 15 38 38 H 1.09001 * 109.47033 * 354.90536 * 18 17 15 39 39 H 1.09003 * 109.58547 * 177.45131 * 19 18 17 40 40 H 1.09009 * 109.57854 * 297.71642 * 19 18 17 41 41 H 1.08999 * 109.46655 * 59.99399 * 22 21 20 42 42 H 1.08992 * 109.46997 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46828 * 300.00332 * 22 21 20 44 44 H 1.09008 * 109.47339 * 60.00419 * 23 21 20 45 45 H 1.09000 * 109.47115 * 180.02562 * 23 21 20 46 46 H 1.09001 * 109.47349 * 300.00251 * 23 21 20 47 47 H 1.09004 * 109.46946 * 5.08492 * 24 17 15 48 48 H 1.09001 * 109.47183 * 125.07700 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3807 7 6 1.8712 -0.4818 -3.7319 8 7 2.6281 -1.5505 -3.8525 9 14 1.2481 0.3983 -5.2572 10 1 0.4217 1.5642 -4.8531 11 1 2.4028 0.8659 -6.0654 12 1 0.4238 -0.5356 -6.0656 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4455 15 6 1.8768 -0.4912 3.6696 16 8 2.4972 -1.5307 3.7829 17 7 1.5143 0.2004 4.7681 18 6 0.6732 1.3903 4.6296 19 6 -0.6818 1.1393 5.2998 20 16 -0.4024 0.7126 7.0442 21 6 0.7567 -0.6817 6.9210 22 6 1.2195 -1.0892 8.3213 23 6 0.0647 -1.8654 6.2420 24 6 1.9612 -0.2497 6.0873 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7217 -1.2489 32 1 1.6767 -1.7490 -1.2491 33 1 2.8630 -1.8816 -4.7335 34 1 1.6766 -1.7489 1.2494 35 1 3.1300 -0.7209 1.2495 36 1 0.9937 0.7579 2.3563 37 1 1.1630 2.2389 5.1072 38 1 0.5210 1.6067 3.5722 39 1 -1.2928 2.0399 5.2373 40 1 -1.1911 0.3168 4.7974 41 1 0.3565 -1.3868 8.9168 42 1 1.9141 -1.9256 8.2453 43 1 1.7172 -0.2454 8.7993 44 1 -0.2580 -1.5732 5.2427 45 1 0.7613 -2.7007 6.1695 46 1 -0.8023 -2.1658 6.8305 47 1 2.6415 -1.0936 5.9720 48 1 2.4768 0.5660 6.5941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358709157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:52 Heat of formation + Delta-G solvation = -56.954407 kcal Electronic energy + Delta-G solvation = -25406.071897 eV Core-core repulsion = 22007.156540 eV Total energy + Delta-G solvation = -3398.915357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.64665 -39.13910 -37.87965 -36.00835 -35.03626 -33.77670 -31.71285 -29.20533 -28.40013 -28.31025 -27.96986 -26.72186 -24.87275 -24.26942 -21.81769 -20.96094 -20.28710 -19.02632 -18.35901 -17.66828 -17.20873 -16.59742 -16.51038 -16.02333 -15.79598 -15.60558 -15.36693 -14.96104 -14.84967 -14.64530 -14.43303 -14.21474 -13.95861 -13.81366 -13.71022 -13.15221 -13.07603 -12.94385 -12.89474 -12.69383 -12.60403 -12.43376 -12.35224 -12.23262 -12.22640 -11.95789 -11.81576 -11.54727 -11.32669 -10.99012 -10.85034 -10.74233 -10.51829 -10.26999 -9.71055 -8.67201 -8.13694 -6.21382 0.69456 1.42071 1.43216 1.46934 1.54253 1.56220 2.04173 2.44314 2.82001 3.21141 3.53270 3.71736 3.83435 3.93490 3.99126 4.02529 4.08572 4.17891 4.24099 4.43453 4.57769 4.61453 4.64479 4.68832 4.71837 4.72530 4.77710 4.83042 4.84379 4.88170 4.95107 5.09657 5.11906 5.12143 5.20395 5.37269 5.41598 5.47914 5.50315 5.53552 5.58079 5.77139 5.80448 5.90541 6.30945 6.87683 6.94547 7.46374 7.47972 8.99099 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.002795 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.437035 B =10016.898506 C =10420.291215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.161 3.839 14 N -0.724 5.724 15 C 0.701 3.299 16 O -0.629 6.629 17 N -0.627 5.627 18 C 0.107 3.893 19 C -0.099 4.099 20 S -0.260 6.260 21 C -0.038 4.038 22 C -0.123 4.123 23 C -0.129 4.129 24 C 0.136 3.864 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.068 0.932 31 H -0.014 1.014 32 H -0.015 1.015 33 H 0.259 0.741 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.407 0.593 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 8.747 23.835 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.177 4.177 4 C 0.003 3.997 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.036 3.964 14 N -0.383 5.383 15 C 0.402 3.598 16 O -0.510 6.510 17 N -0.363 5.363 18 C -0.018 4.018 19 C -0.248 4.248 20 S -0.032 6.032 21 C -0.149 4.149 22 C -0.182 4.182 23 C -0.188 4.188 24 C 0.011 3.989 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.005 0.995 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.248 0.752 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.159 0.841 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.948 8.427 24.706 27.012 hybrid contribution 0.293 -0.619 -2.460 2.554 sum -6.655 7.808 22.245 24.497 Atomic orbital electron populations 1.21675 0.93602 1.00878 1.01548 1.20708 0.96677 0.96386 0.92635 1.21681 0.99964 0.94480 1.01594 1.18965 0.94316 0.94167 0.92294 1.21617 1.30262 1.12049 0.90976 0.90791 1.25949 0.95702 0.95867 1.02738 1.70135 1.38833 1.25066 1.24006 0.85499 0.78040 0.78846 0.79274 1.17900 1.21115 1.21183 1.21077 0.97452 0.94967 0.82903 1.45259 1.56111 1.33386 1.03544 1.16068 0.79602 0.82785 0.81334 1.90883 1.48435 1.25538 1.86176 1.47108 1.54702 1.29356 1.05152 1.21929 0.89610 0.87567 1.02647 1.23926 1.00361 1.06640 0.93900 1.86859 1.61404 1.42738 1.12156 1.23057 0.96122 0.95297 1.00428 1.21614 1.02286 1.02676 0.91595 1.21928 1.00619 0.96694 0.99568 1.21572 0.95038 1.01511 0.80808 0.91426 0.92386 0.94593 0.94390 0.92430 0.91310 0.99537 0.99671 0.93212 0.94022 0.93781 0.75219 0.87706 0.88145 0.84135 0.90256 0.91048 0.90295 0.90527 0.94357 0.92526 0.90983 0.89637 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 2 C -0.06 -2.34 0.54 -52.18 -0.03 -2.37 16 3 C -0.12 -3.86 8.05 71.98 0.58 -3.28 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -26.96 7.65 25.60 0.20 -26.77 16 6 H 0.07 3.63 5.68 -2.91 -0.02 3.62 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 9 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 13 C 0.16 5.72 4.57 86.38 0.39 6.11 16 14 N -0.72 -19.82 4.86 -478.52 -2.33 -22.14 16 15 C 0.70 20.55 8.13 179.05 1.46 22.01 16 16 O -0.63 -24.21 15.67 -3.97 -0.06 -24.28 16 17 N -0.63 -13.06 2.14 -840.54 -1.80 -14.86 16 18 C 0.11 1.44 6.23 86.48 0.54 1.98 16 19 C -0.10 -1.27 6.26 72.06 0.45 -0.82 16 20 S -0.26 -4.13 21.09 -56.49 -1.19 -5.32 16 21 C -0.04 -0.64 0.88 -10.89 -0.01 -0.65 16 22 C -0.12 -1.58 8.52 71.98 0.61 -0.97 16 23 C -0.13 -2.59 8.27 71.98 0.60 -1.99 16 24 C 0.14 2.60 4.88 86.31 0.42 3.02 16 25 H 0.07 1.63 6.86 -2.39 -0.02 1.61 16 26 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.98 6.62 -2.38 -0.02 1.97 16 30 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.41 8.53 3.52 -92.71 -0.33 8.21 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.14 5.41 -2.39 -0.01 1.13 16 39 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.21 7.36 -2.38 -0.02 1.19 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.04 0.90 6.44 -2.38 -0.02 0.88 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 46 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.09 2.03 6.90 -2.38 -0.02 2.02 16 48 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.47 373.98 3.91 -65.56 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.61 Total: 17.20 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.37 Total: -4.75 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -3.84 Total: -93.59 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.28 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -1.19 Total: -5.32 kcal Total: -69.47 3.91 -65.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358709157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.603 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds