Wall clock time and date at job start Tue Mar 31 2020 11:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46827 * 2 1 4 4 C 1.38337 * 119.86106 * 269.72789 * 3 2 1 5 5 C 1.37977 * 120.14316 * 179.72582 * 4 3 2 6 6 C 1.39528 * 119.85602 * 0.56514 * 5 4 3 7 7 C 1.47813 * 120.14139 * 179.72396 * 6 5 4 8 8 C 1.31109 * 117.80984 * 244.71641 * 7 6 5 9 9 C 1.50338 * 123.43519 * 180.54462 * 8 7 6 10 10 N 1.46990 * 109.19485 * 349.44616 * 9 8 7 11 11 C 1.34768 * 121.34156 * 223.05428 * 10 9 8 12 12 O 1.21585 * 120.00822 * 174.77129 * 11 10 9 13 13 N 1.34782 * 119.99875 * 354.77484 * 11 10 9 14 14 C 1.46498 * 120.00214 * 184.97116 * 13 11 10 15 15 C 1.50698 * 109.47399 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99760 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00241 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00380 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00192 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47348 * 89.99558 * 19 17 15 21 21 H 1.48501 * 109.47453 * 210.00165 * 19 17 15 22 22 H 1.48511 * 109.46932 * 329.99768 * 19 17 15 23 23 C 1.47311 * 117.32495 * 43.03291 * 10 9 8 24 24 C 1.49990 * 117.80495 * 64.98678 * 7 6 5 25 25 C 1.39533 * 119.71644 * 359.71143 * 6 5 4 26 26 C 1.37978 * 119.85930 * 359.97438 * 25 6 5 27 27 H 1.08996 * 109.47200 * 59.99614 * 1 2 3 28 28 H 1.09004 * 109.47085 * 299.99564 * 1 2 3 29 29 H 1.08996 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47398 * 119.99626 * 2 1 3 31 31 H 1.08995 * 109.46996 * 240.00607 * 2 1 3 32 32 H 1.08003 * 119.92973 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.06981 * 180.25346 * 5 4 3 34 34 H 1.07997 * 118.28716 * 0.83002 * 8 7 6 35 35 H 1.09000 * 109.68016 * 229.42933 * 9 8 7 36 36 H 1.09003 * 109.38487 * 109.28555 * 9 8 7 37 37 H 0.97000 * 119.99574 * 4.97117 * 13 11 10 38 38 H 1.09003 * 109.47068 * 299.99930 * 14 13 11 39 39 H 1.08998 * 109.47253 * 59.99707 * 14 13 11 40 40 H 0.96996 * 120.00803 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.76405 * 178.12436 * 23 10 9 42 42 H 1.09006 * 109.76748 * 57.34998 * 23 10 9 43 43 H 1.09001 * 109.31204 * 281.29368 * 24 7 6 44 44 H 1.09000 * 109.31702 * 40.90996 * 24 7 6 45 45 H 1.08004 * 120.07122 * 180.02562 * 25 6 5 46 46 H 1.07997 * 119.92880 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2672 2.0684 -1.1997 5 6 2.7217 3.3711 -1.2065 6 6 2.9556 4.0315 0.0001 7 6 3.4483 5.4251 0.0002 8 6 4.6409 5.6522 0.4951 9 6 5.2605 7.0200 0.5689 10 7 4.4455 7.9624 -0.2110 11 6 5.0141 8.8750 -1.0235 12 8 4.3175 9.5788 -1.7291 13 7 6.3550 9.0076 -1.0540 14 6 6.9679 10.0711 -1.8537 15 6 8.4671 10.0013 -1.7178 16 1 8.9183 9.2405 -1.0981 17 6 9.2629 10.9080 -2.3854 18 7 10.5712 10.8474 -2.2664 19 14 8.4826 12.2234 -3.4578 20 1 8.2166 13.4346 -2.6409 21 1 9.4058 12.5684 -4.5686 22 1 7.2049 11.7129 -4.0166 23 6 2.9822 7.8689 -0.0693 24 6 2.5479 6.4856 -0.5604 25 6 2.7221 3.3709 1.2068 26 6 2.2614 2.0703 1.1999 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 2.0907 1.5544 -2.1330 33 1 2.9008 3.8769 -2.1439 34 1 5.2099 4.8122 0.8652 35 1 6.2707 6.9878 0.1608 36 1 5.2978 7.3447 1.6087 37 1 6.9142 8.3988 -0.5465 38 1 6.6921 9.9435 -2.9005 39 1 6.6155 11.0402 -1.5006 40 1 11.1311 11.4854 -2.7357 41 1 2.5035 8.6410 -0.6717 42 1 2.7046 7.9923 0.9776 43 1 2.5936 6.4588 -1.6491 44 1 1.5240 6.2966 -0.2379 45 1 2.9008 3.8767 2.1441 46 1 2.0807 1.5577 2.1332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426455770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:58 Heat of formation + Delta-G solvation = 3.113070 kcal Electronic energy + Delta-G solvation = -24965.093731 eV Core-core repulsion = 21433.339144 eV Total energy + Delta-G solvation = -3531.754587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.21292 -39.48747 -37.38341 -34.81721 -34.34743 -32.79961 -32.22458 -31.29404 -30.92988 -29.26269 -27.72440 -25.59739 -23.88245 -23.52489 -22.71313 -21.87103 -21.11054 -19.95236 -18.61879 -17.73743 -16.53273 -16.16231 -15.94072 -15.67776 -15.42202 -15.27067 -14.45050 -14.33003 -14.15735 -14.01768 -13.90551 -13.63818 -13.56855 -13.38453 -13.17245 -12.86692 -12.55597 -12.39945 -12.16474 -12.06967 -11.91886 -11.68451 -11.57185 -11.24301 -11.11914 -10.95650 -10.75315 -10.70053 -9.94361 -9.57572 -9.43760 -9.22331 -9.15579 -8.76035 -8.59018 -8.47193 -7.95707 -6.18964 -4.20757 0.97833 1.19524 2.00935 3.06757 3.29422 3.36361 3.45455 3.50272 3.76025 4.34991 4.36247 4.50018 4.52674 4.60014 4.76422 4.82615 4.89028 4.98796 5.03932 5.14482 5.16633 5.17664 5.21345 5.24484 5.33790 5.43968 5.50245 5.53522 5.59785 5.61511 5.75840 5.82420 5.84287 5.92579 5.98423 6.08818 6.32603 6.36990 6.39750 6.61340 6.70133 6.78821 6.82833 7.14083 7.27368 7.41603 7.53930 8.27566 8.67808 8.81261 9.20021 9.42521 10.92967 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.002286 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.684663 B =12246.374857 C =12497.906984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.052 4.052 7 C -0.077 4.077 8 C -0.154 4.154 9 C 0.144 3.856 10 N -0.639 5.639 11 C 0.703 3.297 12 O -0.601 6.601 13 N -0.722 5.722 14 C 0.237 3.763 15 C -0.541 4.541 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 C 0.133 3.867 24 C -0.094 4.094 25 C -0.106 4.106 26 C -0.118 4.118 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.391 0.609 38 H 0.024 0.976 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.123 0.877 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.008 -20.712 8.262 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.122 4.122 6 C -0.052 4.052 7 C -0.078 4.078 8 C -0.172 4.172 9 C 0.020 3.980 10 N -0.379 5.379 11 C 0.404 3.596 12 O -0.480 6.480 13 N -0.376 5.376 14 C 0.115 3.885 15 C -0.579 4.579 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.531 5.531 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C 0.009 3.991 24 C -0.131 4.131 25 C -0.124 4.124 26 C -0.136 4.136 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.227 0.773 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.141 0.859 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.290 -20.046 7.657 28.855 hybrid contribution 0.165 0.255 -0.278 0.412 sum -19.125 -19.792 7.379 28.495 Atomic orbital electron populations 1.21748 0.94728 1.01655 1.02272 1.20551 0.96190 0.92748 1.02799 1.19938 0.99286 0.96240 0.93204 1.20957 1.00149 0.94850 0.97510 1.21263 0.98740 0.94575 0.97582 1.19084 0.99459 0.93498 0.93197 1.19512 0.95590 0.92153 1.00507 1.22714 0.95958 0.97862 1.00693 1.20406 0.94907 0.86236 0.96403 1.47325 1.06525 1.36377 1.47634 1.15945 0.83103 0.80365 0.80175 1.90847 1.62359 1.49076 1.45737 1.45534 1.03578 1.36151 1.52339 1.19371 0.93208 0.85265 0.90699 1.21083 0.88355 1.17328 1.31179 0.90347 1.24778 0.94669 0.97244 0.95943 1.69878 1.03498 1.36942 1.42745 0.86812 0.79944 0.82267 0.80653 1.19865 1.20947 1.18411 1.21405 0.79874 0.96758 1.01035 1.20732 0.98161 0.92982 1.01273 1.21260 0.99306 0.94564 0.97266 1.20936 1.00369 0.94842 0.97440 0.92525 0.92560 0.92444 0.91104 0.91084 0.86152 0.85931 0.86398 0.89005 0.90413 0.77339 0.95843 0.96404 0.92292 0.88489 0.91598 0.90249 0.90193 0.85926 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.09 -0.54 6.06 -27.88 -0.17 -0.70 16 3 C -0.09 -0.72 5.14 -104.54 -0.54 -1.26 16 4 C -0.12 -1.05 9.68 -39.64 -0.38 -1.43 16 5 C -0.10 -1.05 9.73 -39.20 -0.38 -1.43 16 6 C -0.05 -0.54 5.08 -105.02 -0.53 -1.08 16 7 C -0.08 -0.85 5.28 -102.80 -0.54 -1.40 16 8 C -0.15 -1.68 9.45 -36.23 -0.34 -2.02 16 9 C 0.14 1.76 6.47 -5.10 -0.03 1.73 16 10 N -0.64 -9.92 2.96 -179.89 -0.53 -10.46 16 11 C 0.70 14.41 8.32 -86.92 -0.72 13.68 16 12 O -0.60 -14.48 15.85 5.29 0.08 -14.40 16 13 N -0.72 -15.39 5.45 -66.42 -0.36 -15.75 16 14 C 0.24 6.00 4.50 -5.20 -0.02 5.98 16 15 C -0.54 -15.04 9.83 -34.44 -0.34 -15.38 16 16 H 0.08 2.26 7.84 -52.48 -0.41 1.84 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 19 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 23 C 0.13 1.72 6.48 -3.55 -0.02 1.70 16 24 C -0.09 -1.05 5.90 -28.18 -0.17 -1.21 16 25 C -0.11 -0.98 9.66 -39.19 -0.38 -1.35 16 26 C -0.12 -0.99 9.68 -39.64 -0.38 -1.37 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.12 1.15 7.94 -52.49 -0.42 0.73 16 35 H 0.09 1.14 6.04 -51.93 -0.31 0.83 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.39 7.38 6.00 -40.82 -0.25 7.14 16 38 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 39 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.10 1.41 7.08 -51.93 -0.37 1.04 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 0.76 8.13 -51.93 -0.42 0.33 16 45 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -33.15 376.43 -10.90 -44.05 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.18 Total: 3.65 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -4.69 Total: -3.91 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.12 Total: -52.10 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.15 -10.90 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426455770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.167 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds