Wall clock time and date at job start Tue Mar 31 2020 11:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46827 * 2 1 4 4 C 1.38337 * 119.86106 * 269.72789 * 3 2 1 5 5 C 1.37977 * 120.14316 * 179.72582 * 4 3 2 6 6 C 1.39528 * 119.85602 * 0.56514 * 5 4 3 7 7 C 1.47813 * 120.14139 * 179.72396 * 6 5 4 8 8 C 1.31109 * 117.80984 * 244.71641 * 7 6 5 9 9 C 1.50338 * 123.43519 * 180.54462 * 8 7 6 10 10 N 1.46990 * 109.19485 * 349.44616 * 9 8 7 11 11 C 1.34768 * 121.34156 * 223.05428 * 10 9 8 12 12 O 1.21585 * 120.00822 * 174.77129 * 11 10 9 13 13 N 1.34782 * 119.99875 * 354.77484 * 11 10 9 14 14 C 1.46498 * 120.00214 * 184.97116 * 13 11 10 15 15 C 1.50698 * 109.47399 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99760 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00241 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00380 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00192 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47348 * 89.99558 * 19 17 15 21 21 H 1.48501 * 109.47453 * 210.00165 * 19 17 15 22 22 H 1.48511 * 109.46932 * 329.99768 * 19 17 15 23 23 C 1.47311 * 117.32495 * 43.03291 * 10 9 8 24 24 C 1.49990 * 117.80495 * 64.98678 * 7 6 5 25 25 C 1.39533 * 119.71644 * 359.71143 * 6 5 4 26 26 C 1.37978 * 119.85930 * 359.97438 * 25 6 5 27 27 H 1.08996 * 109.47200 * 59.99614 * 1 2 3 28 28 H 1.09004 * 109.47085 * 299.99564 * 1 2 3 29 29 H 1.08996 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47398 * 119.99626 * 2 1 3 31 31 H 1.08995 * 109.46996 * 240.00607 * 2 1 3 32 32 H 1.08003 * 119.92973 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.06981 * 180.25346 * 5 4 3 34 34 H 1.07997 * 118.28716 * 0.83002 * 8 7 6 35 35 H 1.09000 * 109.68016 * 229.42933 * 9 8 7 36 36 H 1.09003 * 109.38487 * 109.28555 * 9 8 7 37 37 H 0.97000 * 119.99574 * 4.97117 * 13 11 10 38 38 H 1.09003 * 109.47068 * 299.99930 * 14 13 11 39 39 H 1.08998 * 109.47253 * 59.99707 * 14 13 11 40 40 H 0.96996 * 120.00803 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.76405 * 178.12436 * 23 10 9 42 42 H 1.09006 * 109.76748 * 57.34998 * 23 10 9 43 43 H 1.09001 * 109.31204 * 281.29368 * 24 7 6 44 44 H 1.09000 * 109.31702 * 40.90996 * 24 7 6 45 45 H 1.08004 * 120.07122 * 180.02562 * 25 6 5 46 46 H 1.07997 * 119.92880 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2672 2.0684 -1.1997 5 6 2.7217 3.3711 -1.2065 6 6 2.9556 4.0315 0.0001 7 6 3.4483 5.4251 0.0002 8 6 4.6409 5.6522 0.4951 9 6 5.2605 7.0200 0.5689 10 7 4.4455 7.9624 -0.2110 11 6 5.0141 8.8750 -1.0235 12 8 4.3175 9.5788 -1.7291 13 7 6.3550 9.0076 -1.0540 14 6 6.9679 10.0711 -1.8537 15 6 8.4671 10.0013 -1.7178 16 1 8.9183 9.2405 -1.0981 17 6 9.2629 10.9080 -2.3854 18 7 10.5712 10.8474 -2.2664 19 14 8.4826 12.2234 -3.4578 20 1 8.2166 13.4346 -2.6409 21 1 9.4058 12.5684 -4.5686 22 1 7.2049 11.7129 -4.0166 23 6 2.9822 7.8689 -0.0693 24 6 2.5479 6.4856 -0.5604 25 6 2.7221 3.3709 1.2068 26 6 2.2614 2.0703 1.1999 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 2.0907 1.5544 -2.1330 33 1 2.9008 3.8769 -2.1439 34 1 5.2099 4.8122 0.8652 35 1 6.2707 6.9878 0.1608 36 1 5.2978 7.3447 1.6087 37 1 6.9142 8.3988 -0.5465 38 1 6.6921 9.9435 -2.9005 39 1 6.6155 11.0402 -1.5006 40 1 11.1311 11.4854 -2.7357 41 1 2.5035 8.6410 -0.6717 42 1 2.7046 7.9923 0.9776 43 1 2.5936 6.4588 -1.6491 44 1 1.5240 6.2966 -0.2379 45 1 2.9008 3.8767 2.1441 46 1 2.0807 1.5577 2.1332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426455770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:57 Heat of formation + Delta-G solvation = -15.155619 kcal Electronic energy + Delta-G solvation = -24965.885920 eV Core-core repulsion = 21433.339144 eV Total energy + Delta-G solvation = -3532.546776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43685 -40.41389 -38.55166 -36.23409 -35.65332 -34.48628 -33.46961 -32.20836 -31.76132 -30.26680 -29.41164 -26.60388 -24.98253 -24.34974 -23.70554 -23.30271 -21.92333 -21.31970 -20.14955 -18.68205 -18.46415 -17.44875 -16.95182 -16.75552 -16.38952 -16.36658 -16.06540 -15.47338 -15.29206 -15.07995 -14.88164 -14.58013 -14.50283 -14.41806 -14.25434 -14.20244 -14.00960 -13.65047 -13.38052 -13.10573 -12.85405 -12.70369 -12.68005 -12.52626 -12.16184 -11.99133 -11.92260 -11.66642 -11.64722 -11.54728 -11.25362 -10.91406 -10.17850 -10.02326 -9.83990 -9.49123 -9.24695 -8.39467 -6.46282 0.27561 0.51588 1.16606 1.33564 1.35362 1.49137 1.70342 2.14625 2.29169 2.81865 2.95887 3.10695 3.55743 3.87998 3.92486 3.97252 4.06868 4.13610 4.17533 4.28513 4.36037 4.48513 4.52442 4.56323 4.61155 4.67808 4.70303 4.73408 4.74412 4.82565 5.01134 5.05185 5.06795 5.09836 5.14026 5.22078 5.23847 5.32132 5.40186 5.52044 5.53403 5.60037 5.62075 5.74020 5.83821 5.97879 6.11424 6.20495 6.54756 7.06847 7.19042 7.60594 8.75131 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.002286 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.684663 B =12246.374857 C =12497.906984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.066 4.066 7 C -0.078 4.078 8 C -0.154 4.154 9 C 0.139 3.861 10 N -0.631 5.631 11 C 0.700 3.300 12 O -0.641 6.641 13 N -0.723 5.723 14 C 0.251 3.749 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.028 3.972 18 N -0.930 5.930 19 Si 0.937 3.063 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.262 1.262 23 C 0.129 3.871 24 C -0.087 4.087 25 C -0.109 4.109 26 C -0.122 4.122 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.403 0.597 38 H 0.008 0.992 39 H 0.011 0.989 40 H 0.273 0.727 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.135 0.865 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.359 -22.090 9.368 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.143 4.143 5 C -0.137 4.137 6 C -0.066 4.066 7 C -0.078 4.078 8 C -0.173 4.173 9 C 0.017 3.983 10 N -0.369 5.369 11 C 0.401 3.599 12 O -0.524 6.524 13 N -0.378 5.378 14 C 0.127 3.873 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.173 4.173 18 N -0.568 5.568 19 Si 0.761 3.239 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.187 1.187 23 C 0.007 3.993 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.140 4.140 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.240 0.760 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.153 0.847 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.656 -21.480 8.810 31.075 hybrid contribution 0.548 0.550 -0.553 0.953 sum -20.108 -20.930 8.257 30.176 Atomic orbital electron populations 1.21734 0.94266 1.02366 1.01866 1.20598 0.96497 0.91510 1.03604 1.20237 0.98465 0.97216 0.92959 1.21153 1.00064 0.94576 0.98518 1.21338 0.99629 0.95303 0.97475 1.19071 1.00596 0.93200 0.93754 1.19547 0.95555 0.92551 1.00151 1.22710 0.95984 0.97356 1.01210 1.20651 0.94280 0.86343 0.97011 1.47368 1.07954 1.35314 1.46287 1.16057 0.82429 0.80920 0.80470 1.90812 1.63039 1.50975 1.47587 1.45269 1.04332 1.35789 1.52379 1.18963 0.91775 0.86178 0.90417 1.21245 0.89659 1.16756 1.30636 0.92284 1.25566 0.95086 0.99403 0.97237 1.69972 1.04769 1.38156 1.43952 0.85860 0.78980 0.79787 0.79281 1.18819 1.19727 1.18680 1.21626 0.78033 0.97281 1.02408 1.20661 0.99487 0.92026 1.00290 1.21437 0.99009 0.94950 0.97269 1.21225 0.99709 0.94681 0.98337 0.93163 0.92735 0.91208 0.90045 0.90581 0.85041 0.86587 0.84832 0.89426 0.88054 0.76014 0.97376 0.97150 0.91811 0.90366 0.88844 0.91841 0.88114 0.84685 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 71.98 0.71 -0.63 16 2 C -0.08 -0.87 6.06 29.85 0.18 -0.69 16 3 C -0.09 -1.31 5.14 -19.81 -0.10 -1.41 16 4 C -0.13 -2.10 9.68 22.23 0.22 -1.89 16 5 C -0.12 -2.34 9.73 22.52 0.22 -2.12 16 6 C -0.07 -1.27 5.08 -20.12 -0.10 -1.38 16 7 C -0.08 -1.60 5.28 -17.70 -0.09 -1.69 16 8 C -0.15 -3.09 9.45 25.42 0.24 -2.85 16 9 C 0.14 3.18 6.47 85.43 0.55 3.73 16 10 N -0.63 -19.09 2.96 -841.33 -2.49 -21.58 16 11 C 0.70 28.76 8.32 179.06 1.49 30.25 16 12 O -0.64 -31.37 15.85 -3.98 -0.06 -31.44 16 13 N -0.72 -30.96 5.45 -482.31 -2.63 -33.59 16 14 C 0.25 12.81 4.50 85.63 0.39 13.20 16 15 C -0.55 -30.66 9.83 25.60 0.25 -30.41 16 16 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 17 C 0.03 1.57 5.47 84.65 0.46 2.04 16 18 N -0.93 -55.86 13.96 21.45 0.30 -55.56 16 19 Si 0.94 44.77 27.47 68.60 1.88 46.66 16 20 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.26 -12.58 6.54 99.48 0.65 -11.93 16 23 C 0.13 3.20 6.48 86.25 0.56 3.76 16 24 C -0.09 -1.85 5.90 29.66 0.17 -1.68 16 25 C -0.11 -1.76 9.66 22.52 0.22 -1.54 16 26 C -0.12 -1.75 9.68 22.23 0.22 -1.54 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 31 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.13 2.29 7.94 -2.91 -0.02 2.27 16 35 H 0.09 2.09 6.04 -2.39 -0.01 2.08 16 36 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.40 15.20 6.00 -92.71 -0.56 14.65 16 38 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 39 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.08 2.27 7.08 -2.39 -0.02 2.25 16 42 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.10 1.73 8.13 -2.39 -0.02 1.71 16 45 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 46 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -71.21 376.43 2.93 -68.28 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.36 Total: 22.07 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.58 Total: 5.17 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -4.82 Total: -110.73 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.06 Total: -31.44 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -71.21 2.93 -68.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426455770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.120 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds