Wall clock time and date at job start Tue Mar 31 2020 11:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36908 * 125.05953 * 2 1 4 4 H 0.97003 * 125.01188 * 0.05253 * 3 2 1 5 5 C 1.37123 * 109.97131 * 180.02562 * 3 2 1 6 6 C 1.40637 * 107.25596 * 359.97438 * 5 3 2 7 7 C 1.39537 * 120.04228 * 180.02562 * 6 5 3 8 8 C 1.37912 * 119.99297 * 359.68193 * 7 6 5 9 9 C 1.38319 * 120.58875 * 0.57811 * 8 7 6 10 10 C 1.39341 * 120.49535 * 359.44879 * 9 8 7 11 11 C 1.47504 * 120.20590 * 180.23409 * 10 9 8 12 12 O 1.21602 * 120.00444 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00033 * 0.02562 * 11 10 9 14 14 C 1.46503 * 120.00241 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47314 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47202 * 300.00299 * 15 14 13 17 17 C 1.52993 * 109.46935 * 60.00375 * 15 14 13 18 18 C 1.50704 * 109.47025 * 180.02562 * 15 14 13 19 19 H 1.07998 * 120.00217 * 1.34091 * 18 15 14 20 20 C 1.37877 * 119.99861 * 181.35169 * 18 15 14 21 21 N 1.31511 * 120.00114 * 193.97251 * 20 18 15 22 22 Si 1.86799 * 119.99897 * 13.97025 * 20 18 15 23 23 H 1.48497 * 109.47512 * 84.55115 * 22 20 18 24 24 H 1.48501 * 109.46945 * 204.55344 * 22 20 18 25 25 H 1.48505 * 109.47318 * 324.54689 * 22 20 18 26 26 C 1.34205 * 125.06026 * 180.02562 * 2 1 3 27 27 C 1.50707 * 126.55404 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47153 * 89.97930 * 1 2 3 29 29 H 1.09002 * 109.46907 * 209.97769 * 1 2 3 30 30 H 1.09000 * 109.46991 * 329.97695 * 1 2 3 31 31 H 1.07998 * 119.99993 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.70512 * 180.30412 * 8 7 6 33 33 H 1.07994 * 119.74828 * 179.72988 * 9 8 7 34 34 H 0.97000 * 119.99881 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.47323 * 300.00870 * 14 13 11 36 36 H 1.09000 * 109.46695 * 60.00233 * 14 13 11 37 37 H 1.08999 * 109.47325 * 69.36234 * 16 15 14 38 38 H 1.09000 * 109.47098 * 189.36921 * 16 15 14 39 39 H 1.09003 * 109.47014 * 309.36774 * 16 15 14 40 40 H 1.08996 * 109.47336 * 60.00176 * 17 15 14 41 41 H 1.09001 * 109.47083 * 179.97438 * 17 15 14 42 42 H 1.09001 * 109.47462 * 299.99578 * 17 15 14 43 43 H 0.96999 * 120.00278 * 179.97438 * 21 20 18 44 44 H 1.08992 * 109.46860 * 89.97729 * 27 26 2 45 45 H 1.09000 * 109.46952 * 209.97881 * 27 26 2 46 46 H 1.09003 * 109.46838 * 329.97512 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2935 1.1207 0.0000 4 1 1.9628 2.0326 0.0007 5 6 3.6174 0.7637 -0.0006 6 6 3.6706 -0.6416 -0.0004 7 6 4.9041 -1.2940 -0.0003 8 6 6.0719 -0.5605 -0.0071 9 6 6.0347 0.8222 -0.0020 10 6 4.8155 1.4967 -0.0014 11 6 4.7832 2.9714 -0.0012 12 8 3.7172 3.5563 -0.0002 13 7 5.9354 3.6706 -0.0020 14 6 5.9035 5.1353 -0.0023 15 6 7.3345 5.6767 -0.0039 16 6 8.0680 5.1828 1.2447 17 6 8.0653 5.1824 -1.2538 18 6 7.3015 7.1834 -0.0036 19 1 6.3550 7.7028 0.0195 20 6 8.4799 7.8987 -0.0330 21 7 8.4755 9.1848 0.2417 22 14 10.0826 7.0410 -0.4631 23 1 10.2341 6.9860 -1.9393 24 1 11.2200 7.7943 0.1235 25 1 10.0680 5.6608 0.0848 26 6 2.2779 -1.0985 -0.0005 27 6 1.8026 -2.5287 -0.0006 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 4.9441 -2.3733 -0.0005 32 1 7.0241 -1.0703 -0.0120 33 1 6.9576 1.3831 -0.0030 34 1 6.7859 3.2041 -0.0031 35 1 5.3812 5.4872 -0.8920 36 1 5.3824 5.4875 0.8879 37 1 8.2385 4.1092 1.1651 38 1 9.0250 5.6974 1.3312 39 1 7.4630 5.3901 2.1273 40 1 7.5428 5.5342 -2.1433 41 1 9.0847 5.5684 -1.2552 42 1 8.0892 4.0926 -1.2536 43 1 9.3045 9.6879 0.2214 44 1 1.6873 -2.8731 -1.0282 45 1 2.5329 -3.1543 0.5125 46 1 0.8438 -2.5929 0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:46 Heat of formation + Delta-G solvation = 19.118780 kcal Electronic energy + Delta-G solvation = -25958.289326 eV Core-core repulsion = 22427.228799 eV Total energy + Delta-G solvation = -3531.060527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57563 -39.36178 -37.09106 -36.67418 -33.43025 -33.28494 -31.69669 -31.09962 -30.27185 -27.97471 -26.44111 -26.10533 -26.00306 -24.95546 -22.90649 -21.89718 -20.22418 -19.48648 -19.01796 -17.64360 -17.17499 -16.15685 -15.96885 -15.33484 -15.28434 -15.22048 -14.85481 -14.72861 -14.03028 -13.70622 -13.41684 -13.31109 -13.10514 -12.98558 -12.88914 -12.81703 -12.63902 -12.46385 -12.24041 -12.13085 -12.06283 -11.73145 -11.53987 -11.32458 -11.27429 -10.46570 -10.35057 -10.19706 -10.09281 -9.64793 -9.61314 -9.14753 -8.71084 -8.61729 -8.47794 -8.25516 -7.68175 -6.16869 -4.14389 0.64951 1.53303 2.34679 3.07704 3.14490 3.22516 3.29512 3.37235 3.56782 3.94206 4.33617 4.42388 4.69833 4.78757 4.89677 4.99424 5.03679 5.06053 5.13806 5.21017 5.29458 5.47889 5.54115 5.60451 5.61355 5.72674 5.76238 5.83303 5.94709 6.02233 6.02976 6.22000 6.32918 6.40246 6.44407 6.49251 6.55247 6.60250 6.66561 6.70814 6.73219 6.92578 7.04010 7.18376 7.40025 7.51217 7.69406 7.87439 8.41308 8.51378 8.88164 9.46867 10.96214 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.002997 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.260181 B = 9340.526438 C =10158.706663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.075 3.925 3 N -0.574 5.574 4 H 0.427 0.573 5 C 0.154 3.846 6 C -0.114 4.114 7 C -0.047 4.047 8 C -0.158 4.158 9 C -0.062 4.062 10 C -0.144 4.144 11 C 0.554 3.446 12 O -0.561 6.561 13 N -0.713 5.713 14 C 0.142 3.858 15 C 0.029 3.971 16 C -0.143 4.143 17 C -0.149 4.149 18 C -0.514 4.514 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.891 5.891 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.305 1.305 25 H -0.249 1.249 26 C -0.177 4.177 27 C -0.073 4.073 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.397 0.603 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.029 0.971 43 H 0.265 0.735 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 -24.173 -0.500 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.033 4.033 3 N -0.177 5.177 4 H 0.267 0.733 5 C 0.043 3.957 6 C -0.119 4.119 7 C -0.066 4.066 8 C -0.177 4.177 9 C -0.082 4.082 10 C -0.150 4.150 11 C 0.342 3.658 12 O -0.442 6.442 13 N -0.364 5.364 14 C 0.020 3.980 15 C 0.027 3.973 16 C -0.200 4.200 17 C -0.205 4.205 18 C -0.552 4.552 19 H 0.094 0.906 20 C -0.127 4.127 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.213 1.213 24 H -0.234 1.234 25 H -0.175 1.175 26 C -0.184 4.184 27 C -0.130 4.130 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.233 0.767 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.509 -23.392 -0.472 25.648 hybrid contribution 1.408 0.104 -0.323 1.449 sum -9.100 -23.288 -0.796 25.016 Atomic orbital electron populations 1.20474 0.87738 1.03686 1.03165 1.20202 0.93458 0.85603 1.04032 1.41869 1.03835 1.09116 1.62900 0.73317 1.17876 0.84158 0.93111 1.00593 1.19046 0.93408 0.91470 1.07988 1.20626 0.90310 0.99472 0.96188 1.20770 0.98119 0.93425 1.05385 1.21069 0.95811 0.94732 0.96620 1.19062 0.91469 0.92603 1.11824 1.18160 0.84462 0.86473 0.76716 1.90660 1.30015 1.71495 1.52030 1.46216 1.07837 1.09072 1.73238 1.21551 0.99090 0.75777 1.01618 1.18723 0.89994 0.97048 0.91507 1.22307 1.01225 0.97183 0.99308 1.22368 1.00176 0.97654 1.00338 1.20704 0.94839 0.87422 1.52188 0.90552 1.24972 0.98858 0.94709 0.94171 1.69947 1.27907 1.07896 1.46990 0.87294 0.82972 0.79651 0.78306 1.21315 1.23366 1.17471 1.19975 0.90287 0.94764 1.13394 1.20072 1.00581 0.90881 1.01476 0.90406 0.89727 0.91193 0.85809 0.85384 0.85344 0.76717 0.91858 0.91744 0.95965 0.92420 0.93351 0.92735 0.93940 0.95202 0.92524 0.92007 0.91959 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.18 36.01 0.37 -0.30 16 2 C 0.08 0.83 7.08 -81.75 -0.58 0.25 16 3 N -0.57 -7.73 5.87 -6.76 -0.04 -7.77 16 4 H 0.43 5.82 7.54 -40.82 -0.31 5.52 16 5 C 0.15 2.26 6.87 -83.76 -0.58 1.68 16 6 C -0.11 -1.47 6.35 -105.15 -0.67 -2.13 16 7 C -0.05 -0.51 10.09 -39.22 -0.40 -0.90 16 8 C -0.16 -1.65 10.00 -39.67 -0.40 -2.05 16 9 C -0.06 -0.76 9.52 -39.14 -0.37 -1.14 16 10 C -0.14 -2.15 5.88 -104.88 -0.62 -2.77 16 11 C 0.55 9.69 7.76 -12.48 -0.10 9.59 16 12 O -0.56 -11.21 15.16 5.28 0.08 -11.13 16 13 N -0.71 -12.15 4.95 -61.35 -0.30 -12.46 16 14 C 0.14 2.87 4.49 -4.04 -0.02 2.85 16 15 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 16 C -0.14 -2.91 7.53 37.16 0.28 -2.63 16 17 C -0.15 -3.01 7.52 37.15 0.28 -2.73 16 18 C -0.51 -13.79 8.62 -34.44 -0.30 -14.09 16 19 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 20 C 0.08 2.10 5.32 -17.82 -0.09 2.00 16 21 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 22 Si 0.89 21.02 22.79 -169.99 -3.87 17.15 16 23 H -0.29 -6.76 7.10 56.52 0.40 -6.36 16 24 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.25 -5.35 4.65 56.52 0.26 -5.08 16 26 C -0.18 -1.96 6.32 -102.68 -0.65 -2.61 16 27 C -0.07 -0.55 10.17 36.01 0.37 -0.19 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.46 7.05 -51.93 -0.37 0.09 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.13 1.35 6.37 -52.49 -0.33 1.01 16 34 H 0.40 5.89 4.28 -40.82 -0.17 5.72 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 38 H 0.06 1.25 4.30 -51.93 -0.22 1.02 16 39 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 42 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.38 7.06 -51.93 -0.37 0.01 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -32.04 356.18 -8.08 -40.12 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.54 Total: 9.17 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -3.55 Total: -14.61 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.43 Total: -46.07 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -3.87 Total: 17.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.04 -8.08 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.241 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds