Wall clock time and date at job start Tue Mar 31 2020 11:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36908 * 125.05953 * 2 1 4 4 H 0.97003 * 125.01188 * 0.05253 * 3 2 1 5 5 C 1.37123 * 109.97131 * 180.02562 * 3 2 1 6 6 C 1.40637 * 107.25596 * 359.97438 * 5 3 2 7 7 C 1.39537 * 120.04228 * 180.02562 * 6 5 3 8 8 C 1.37912 * 119.99297 * 359.68193 * 7 6 5 9 9 C 1.38319 * 120.58875 * 0.57811 * 8 7 6 10 10 C 1.39341 * 120.49535 * 359.44879 * 9 8 7 11 11 C 1.47504 * 120.20590 * 180.23409 * 10 9 8 12 12 O 1.21602 * 120.00444 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00033 * 0.02562 * 11 10 9 14 14 C 1.46503 * 120.00241 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47314 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47202 * 300.00299 * 15 14 13 17 17 C 1.52993 * 109.46935 * 60.00375 * 15 14 13 18 18 C 1.50704 * 109.47025 * 180.02562 * 15 14 13 19 19 H 1.07998 * 120.00217 * 1.34091 * 18 15 14 20 20 C 1.37877 * 119.99861 * 181.35169 * 18 15 14 21 21 N 1.31511 * 120.00114 * 193.97251 * 20 18 15 22 22 Si 1.86799 * 119.99897 * 13.97025 * 20 18 15 23 23 H 1.48497 * 109.47512 * 84.55115 * 22 20 18 24 24 H 1.48501 * 109.46945 * 204.55344 * 22 20 18 25 25 H 1.48505 * 109.47318 * 324.54689 * 22 20 18 26 26 C 1.34205 * 125.06026 * 180.02562 * 2 1 3 27 27 C 1.50707 * 126.55404 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47153 * 89.97930 * 1 2 3 29 29 H 1.09002 * 109.46907 * 209.97769 * 1 2 3 30 30 H 1.09000 * 109.46991 * 329.97695 * 1 2 3 31 31 H 1.07998 * 119.99993 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.70512 * 180.30412 * 8 7 6 33 33 H 1.07994 * 119.74828 * 179.72988 * 9 8 7 34 34 H 0.97000 * 119.99881 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.47323 * 300.00870 * 14 13 11 36 36 H 1.09000 * 109.46695 * 60.00233 * 14 13 11 37 37 H 1.08999 * 109.47325 * 69.36234 * 16 15 14 38 38 H 1.09000 * 109.47098 * 189.36921 * 16 15 14 39 39 H 1.09003 * 109.47014 * 309.36774 * 16 15 14 40 40 H 1.08996 * 109.47336 * 60.00176 * 17 15 14 41 41 H 1.09001 * 109.47083 * 179.97438 * 17 15 14 42 42 H 1.09001 * 109.47462 * 299.99578 * 17 15 14 43 43 H 0.96999 * 120.00278 * 179.97438 * 21 20 18 44 44 H 1.08992 * 109.46860 * 89.97729 * 27 26 2 45 45 H 1.09000 * 109.46952 * 209.97881 * 27 26 2 46 46 H 1.09003 * 109.46838 * 329.97512 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2935 1.1207 0.0000 4 1 1.9628 2.0326 0.0007 5 6 3.6174 0.7637 -0.0006 6 6 3.6706 -0.6416 -0.0004 7 6 4.9041 -1.2940 -0.0003 8 6 6.0719 -0.5605 -0.0071 9 6 6.0347 0.8222 -0.0020 10 6 4.8155 1.4967 -0.0014 11 6 4.7832 2.9714 -0.0012 12 8 3.7172 3.5563 -0.0002 13 7 5.9354 3.6706 -0.0020 14 6 5.9035 5.1353 -0.0023 15 6 7.3345 5.6767 -0.0039 16 6 8.0680 5.1828 1.2447 17 6 8.0653 5.1824 -1.2538 18 6 7.3015 7.1834 -0.0036 19 1 6.3550 7.7028 0.0195 20 6 8.4799 7.8987 -0.0330 21 7 8.4755 9.1848 0.2417 22 14 10.0826 7.0410 -0.4631 23 1 10.2341 6.9860 -1.9393 24 1 11.2200 7.7943 0.1235 25 1 10.0680 5.6608 0.0848 26 6 2.2779 -1.0985 -0.0005 27 6 1.8026 -2.5287 -0.0006 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 4.9441 -2.3733 -0.0005 32 1 7.0241 -1.0703 -0.0120 33 1 6.9576 1.3831 -0.0030 34 1 6.7859 3.2041 -0.0031 35 1 5.3812 5.4872 -0.8920 36 1 5.3824 5.4875 0.8879 37 1 8.2385 4.1092 1.1651 38 1 9.0250 5.6974 1.3312 39 1 7.4630 5.3901 2.1273 40 1 7.5428 5.5342 -2.1433 41 1 9.0847 5.5684 -1.2552 42 1 8.0892 4.0926 -1.2536 43 1 9.3045 9.6879 0.2214 44 1 1.6873 -2.8731 -1.0282 45 1 2.5329 -3.1543 0.5125 46 1 0.8438 -2.5929 0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:46 Heat of formation + Delta-G solvation = -1.778344 kcal Electronic energy + Delta-G solvation = -25959.195493 eV Core-core repulsion = 22427.228799 eV Total energy + Delta-G solvation = -3531.966694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.47658 -40.72354 -38.46466 -37.88616 -35.08295 -34.10590 -33.53965 -31.97394 -31.20205 -28.70085 -28.06567 -27.66282 -26.96459 -26.75129 -24.06348 -22.80179 -21.41021 -21.03432 -20.15580 -18.70968 -18.32155 -17.99226 -17.18633 -16.85983 -16.51066 -16.48760 -15.85039 -15.81905 -15.12334 -14.98484 -14.92663 -14.71755 -14.40231 -14.05862 -13.99334 -13.77554 -13.75500 -13.62720 -13.51240 -13.18364 -12.98894 -12.79916 -12.56756 -12.41402 -12.34832 -12.20024 -12.02763 -11.97804 -11.79930 -11.14538 -10.94306 -10.64077 -10.53727 -10.41167 -10.08306 -9.15407 -8.53797 -8.32026 -6.34315 -0.29705 0.64681 1.35921 1.37159 1.44750 1.50470 2.02284 2.20110 2.21114 2.33592 2.95422 3.03969 3.63524 3.72090 3.91803 4.03431 4.05754 4.23586 4.27791 4.33985 4.38051 4.40445 4.49729 4.68566 4.70254 4.75843 4.79218 4.83425 4.84752 4.90627 4.95082 5.00792 5.02518 5.08387 5.12958 5.18490 5.24730 5.35705 5.40289 5.48250 5.56445 5.68808 5.76357 5.77355 5.92027 6.17687 6.27169 6.51614 6.60815 6.69983 7.17372 7.30679 8.85258 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.002997 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.260181 B = 9340.526438 C =10158.706663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.059 3.941 3 N -0.588 5.588 4 H 0.419 0.581 5 C 0.122 3.878 6 C -0.134 4.134 7 C -0.038 4.038 8 C -0.156 4.156 9 C -0.057 4.057 10 C -0.175 4.175 11 C 0.552 3.448 12 O -0.597 6.597 13 N -0.703 5.703 14 C 0.158 3.842 15 C 0.029 3.971 16 C -0.142 4.142 17 C -0.148 4.148 18 C -0.520 4.520 19 H 0.026 0.974 20 C 0.016 3.984 21 N -0.946 5.946 22 Si 0.945 3.055 23 H -0.281 1.281 24 H -0.314 1.314 25 H -0.201 1.201 26 C -0.183 4.183 27 C -0.071 4.071 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.148 0.852 34 H 0.411 0.589 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.265 0.735 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -29.296 -0.764 30.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 N -0.191 5.191 4 H 0.257 0.743 5 C 0.011 3.989 6 C -0.139 4.139 7 C -0.057 4.057 8 C -0.175 4.175 9 C -0.076 4.076 10 C -0.181 4.181 11 C 0.342 3.658 12 O -0.481 6.481 13 N -0.354 5.354 14 C 0.034 3.966 15 C 0.028 3.972 16 C -0.199 4.199 17 C -0.205 4.205 18 C -0.558 4.558 19 H 0.044 0.956 20 C -0.181 4.181 21 N -0.586 5.586 22 Si 0.774 3.226 23 H -0.208 1.208 24 H -0.244 1.244 25 H -0.125 1.125 26 C -0.189 4.189 27 C -0.128 4.128 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.182 0.818 33 H 0.166 0.834 34 H 0.249 0.751 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.986 -28.587 -0.736 29.975 hybrid contribution 0.770 1.679 -0.223 1.861 sum -8.215 -26.907 -0.960 28.150 Atomic orbital electron populations 1.20587 0.85348 1.04726 1.04102 1.20871 0.95088 0.84996 1.03858 1.42064 1.04167 1.09400 1.63441 0.74287 1.18275 0.84506 0.94402 1.01718 1.19488 0.95099 0.90801 1.08471 1.21096 0.89552 1.01180 0.93834 1.21186 0.99593 0.92650 1.04045 1.21385 0.95276 0.95869 0.95103 1.18959 0.93071 0.90583 1.15449 1.18684 0.83746 0.87856 0.75541 1.90636 1.31325 1.72545 1.53559 1.45914 1.08660 1.07287 1.73567 1.21071 0.97894 0.78007 0.99596 1.18645 0.91288 0.93627 0.93679 1.22236 1.00086 0.99852 0.97771 1.22309 0.99114 1.00501 0.98589 1.21012 0.92896 0.90638 1.51275 0.95567 1.25884 1.03048 0.95239 0.93930 1.70111 1.28999 1.10131 1.49321 0.86322 0.77297 0.80742 0.78242 1.20804 1.24383 1.12502 1.20462 0.89608 0.96360 1.12495 1.20162 1.01559 0.88614 1.02420 0.89421 0.87592 0.91202 0.82636 0.81781 0.83416 0.75053 0.93917 0.94115 0.91477 0.93306 0.94172 0.93527 0.94368 0.90755 0.92607 0.91094 0.91040 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 10.18 71.24 0.73 -0.46 16 2 C 0.06 1.26 7.08 40.85 0.29 1.55 16 3 N -0.59 -16.25 5.87 -175.29 -1.03 -17.27 16 4 H 0.42 12.27 7.54 -92.71 -0.70 11.57 16 5 C 0.12 3.56 6.87 39.44 0.27 3.83 16 6 C -0.13 -3.17 6.35 -20.21 -0.13 -3.30 16 7 C -0.04 -0.68 10.09 22.51 0.23 -0.45 16 8 C -0.16 -2.58 10.00 22.21 0.22 -2.36 16 9 C -0.06 -1.21 9.52 22.55 0.21 -0.99 16 10 C -0.17 -5.07 5.88 -20.03 -0.12 -5.19 16 11 C 0.55 19.43 7.76 86.69 0.67 20.10 16 12 O -0.60 -25.06 15.16 -4.04 -0.06 -25.12 16 13 N -0.70 -23.21 4.95 -466.28 -2.31 -25.52 16 14 C 0.16 6.54 4.49 86.38 0.39 6.93 16 15 C 0.03 1.24 0.50 -52.93 -0.03 1.21 16 16 C -0.14 -5.43 7.53 71.98 0.54 -4.89 16 17 C -0.15 -5.58 7.52 71.98 0.54 -5.04 16 18 C -0.52 -29.04 8.62 25.60 0.22 -28.82 16 19 H 0.03 1.66 7.99 -2.91 -0.02 1.64 16 20 C 0.02 0.94 5.32 84.66 0.45 1.39 16 21 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 22 Si 0.95 42.60 22.79 68.60 1.56 44.17 16 23 H -0.28 -12.40 7.10 99.48 0.71 -11.70 16 24 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.20 -7.58 4.65 99.48 0.46 -7.11 16 26 C -0.18 -3.71 6.32 -18.61 -0.12 -3.82 16 27 C -0.07 -0.85 10.17 71.24 0.72 -0.12 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.11 0.90 7.05 -2.39 -0.02 0.88 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.15 2.42 6.37 -2.91 -0.02 2.40 16 34 H 0.41 10.84 4.28 -92.71 -0.40 10.44 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.96 7.13 -2.39 -0.02 1.94 16 38 H 0.05 1.95 4.30 -2.39 -0.01 1.94 16 39 H 0.04 1.57 8.12 -2.39 -0.02 1.56 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.48 2.25 -2.39 -0.01 1.48 16 42 H 0.07 2.13 6.86 -2.39 -0.02 2.12 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 0.68 7.06 -2.39 -0.02 0.66 16 Total: -1.00 -75.56 356.18 3.24 -72.31 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.32 Total: 30.68 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 5.10 Total: -20.44 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -3.04 Total: -101.60 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.06 Total: -25.12 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.56 Total: 44.17 kcal Total: -75.56 3.24 -72.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.534 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds