Wall clock time and date at job start Tue Mar 31 2020 11:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38467 * 120.48151 * 2 1 4 4 C 1.38705 * 118.52097 * 180.29099 * 3 2 1 5 5 C 1.38537 * 119.41207 * 359.72671 * 4 3 2 6 6 N 1.31537 * 120.93776 * 359.97438 * 5 4 3 7 7 C 1.32961 * 121.59669 * 0.02562 * 6 5 4 8 8 C 1.47382 * 119.75163 * 179.97438 * 7 6 5 9 9 C 1.34649 * 120.00469 * 0.02562 * 8 7 6 10 10 C 1.46652 * 120.00300 * 180.02562 * 9 8 7 11 11 O 1.21669 * 119.99903 * 355.01624 * 10 9 8 12 12 N 1.34781 * 119.99862 * 175.01695 * 10 9 8 13 13 C 1.46926 * 120.62822 * 184.95333 * 12 10 9 14 14 C 1.52760 * 109.01054 * 233.58360 * 13 12 10 15 15 C 1.53042 * 109.38207 * 305.59175 * 14 13 12 16 16 C 1.53005 * 109.44742 * 181.25281 * 15 14 13 17 17 C 1.50701 * 109.47216 * 64.93778 * 16 15 14 18 18 H 1.08004 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37868 * 120.00203 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99917 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00367 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47373 * 89.99736 * 21 19 17 23 23 H 1.48500 * 109.47519 * 209.99948 * 21 19 17 24 24 H 1.48502 * 109.47106 * 330.00014 * 21 19 17 25 25 C 1.53035 * 109.53706 * 61.23770 * 15 14 13 26 26 C 1.46918 * 120.63256 * 5.23712 * 12 10 9 27 27 H 1.08997 * 109.46780 * 270.25003 * 1 2 3 28 28 H 1.08997 * 109.46979 * 30.25370 * 1 2 3 29 29 H 1.09003 * 109.47024 * 150.24956 * 1 2 3 30 30 H 1.07997 * 120.73949 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.28973 * 179.71016 * 4 3 2 32 32 H 1.08006 * 119.53056 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.99610 * 179.97438 * 8 7 6 34 34 H 1.08000 * 119.99390 * 359.97438 * 9 8 7 35 35 H 1.08999 * 109.58623 * 353.42585 * 13 12 10 36 36 H 1.09003 * 109.58617 * 113.84256 * 13 12 10 37 37 H 1.09004 * 109.56438 * 185.55466 * 14 13 12 38 38 H 1.08999 * 109.35924 * 65.50084 * 14 13 12 39 39 H 1.09002 * 109.45608 * 301.21632 * 15 14 13 40 40 H 1.08998 * 109.46851 * 184.93825 * 16 15 14 41 41 H 1.08997 * 109.46734 * 304.94094 * 16 15 14 42 42 H 0.96994 * 120.00317 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.49489 * 178.68032 * 25 15 14 44 44 H 1.08997 * 109.52725 * 58.60583 * 25 15 14 45 45 H 1.09006 * 109.58638 * 246.15957 * 26 12 10 46 46 H 1.09003 * 109.58911 * 6.43379 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1933 0.0000 4 6 3.5957 1.1459 -0.0062 5 6 4.2343 -0.0835 -0.0064 6 7 3.5449 -1.2037 -0.0003 7 6 2.2153 -1.2034 0.0057 8 6 1.4837 -2.4828 0.0119 9 6 2.1616 -3.6462 0.0119 10 6 1.4335 -4.9192 0.0174 11 8 0.2206 -4.9259 0.1135 12 7 2.1080 -6.0817 -0.0840 13 6 1.3880 -7.3581 -0.1889 14 6 1.8967 -8.3068 0.8950 15 6 3.4181 -8.4322 0.7870 16 6 3.9258 -9.4064 1.8520 17 6 3.3894 -10.7857 1.5678 18 1 2.7499 -10.9509 0.7133 19 6 3.7141 -11.8365 2.3992 20 7 4.4924 -11.6352 3.4401 21 14 3.0497 -13.5463 2.0465 22 1 3.9987 -14.2743 1.1663 23 1 2.8899 -14.2883 3.3229 24 1 1.7324 -13.4357 1.3699 25 6 4.0612 -7.0604 1.0027 26 6 3.5771 -6.0971 -0.0856 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3633 -0.8922 -0.5100 30 1 1.6895 2.1399 0.0004 31 1 4.1720 2.0593 -0.0111 32 1 5.3137 -0.1227 -0.0108 33 1 0.4037 -2.4871 0.0172 34 1 3.2416 -3.6417 0.0069 35 1 0.3202 -7.1877 -0.0517 36 1 1.5666 -7.7989 -1.1697 37 1 1.4405 -9.2882 0.7645 38 1 1.6330 -7.9100 1.8753 39 1 3.6823 -8.8057 -0.2023 40 1 5.0154 -9.4293 1.8335 41 1 3.5859 -9.0797 2.8348 42 1 4.7211 -12.3745 4.0248 43 1 5.1459 -7.1546 0.9489 44 1 3.7777 -6.6750 1.9820 45 1 3.9380 -6.4329 -1.0578 46 1 3.9533 -5.0944 0.1173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493334451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:16 Heat of formation + Delta-G solvation = -0.337328 kcal Electronic energy + Delta-G solvation = -25051.542253 eV Core-core repulsion = 21519.638045 eV Total energy + Delta-G solvation = -3531.904207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63002 -39.90837 -37.37180 -34.48992 -34.03571 -33.92225 -32.12165 -31.28128 -30.40941 -28.17494 -27.56046 -25.36789 -24.43539 -23.00515 -22.46060 -21.95635 -20.91590 -19.42894 -18.48443 -17.76671 -16.70992 -16.51806 -16.20640 -15.53401 -15.27252 -14.97039 -14.71246 -14.51097 -14.07926 -13.76466 -13.59561 -13.35319 -13.23696 -13.13793 -12.97354 -12.89547 -12.78649 -12.48175 -12.04926 -11.81178 -11.49362 -11.16275 -10.99934 -10.72096 -10.70894 -10.67085 -10.40167 -10.16350 -9.94077 -9.82771 -9.71903 -9.59595 -9.23351 -8.94472 -8.70843 -8.33788 -8.27093 -5.98293 -4.00029 0.18553 0.88630 1.69203 3.17001 3.26742 3.32698 3.39398 3.42273 3.63506 3.89259 4.26290 4.41787 4.47061 4.51330 4.59795 4.77235 4.95164 5.04198 5.17833 5.23923 5.26757 5.36840 5.37569 5.42115 5.47836 5.62718 5.64721 5.66798 5.71845 5.82622 5.87326 6.02025 6.07470 6.12442 6.23662 6.32570 6.39662 6.42855 6.57249 6.70943 7.01674 7.04757 7.14406 7.58830 7.61753 7.68315 7.83375 8.01514 8.29113 8.44202 9.06409 9.63736 11.13003 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.002283 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.029033 B =12261.067253 C =12899.310784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C -0.079 4.079 4 C -0.168 4.168 5 C 0.098 3.902 6 N -0.470 5.470 7 C 0.146 3.854 8 C -0.053 4.053 9 C -0.155 4.155 10 C 0.540 3.460 11 O -0.553 6.553 12 N -0.597 5.597 13 C 0.108 3.892 14 C -0.118 4.118 15 C -0.081 4.081 16 C 0.028 3.972 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.130 4.130 26 C 0.103 3.897 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.159 0.841 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 26.636 -8.618 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.118 4.118 3 C -0.105 4.105 4 C -0.188 4.188 5 C -0.061 4.061 6 N -0.179 5.179 7 C 0.011 3.989 8 C -0.074 4.074 9 C -0.177 4.177 10 C 0.330 3.670 11 O -0.433 6.433 12 N -0.328 5.328 13 C -0.014 4.014 14 C -0.156 4.156 15 C -0.100 4.100 16 C -0.009 4.009 17 C -0.554 4.554 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.169 4.169 26 C -0.019 4.019 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.040 25.710 -8.425 27.226 hybrid contribution -0.413 -0.165 -0.023 0.445 sum -3.453 25.545 -8.449 27.126 Atomic orbital electron populations 1.20859 0.89860 1.03612 1.03175 1.20987 0.97676 0.93143 1.00004 1.21454 0.94193 0.98003 0.96858 1.22271 0.95245 0.99749 1.01522 1.22770 1.00447 0.87420 0.95492 1.67722 1.07375 1.31420 1.11369 1.19903 0.89260 0.92702 0.97063 1.22164 0.99744 0.89364 0.96091 1.23347 1.01671 0.91945 1.00745 1.18398 0.87147 0.84398 0.77013 1.90764 1.13942 1.87612 1.50980 1.48066 1.07400 1.06412 1.70940 1.21717 0.97348 0.82643 0.99650 1.21823 0.97253 0.99040 0.97520 1.21199 0.93692 0.93807 1.01273 1.19123 0.96136 0.92657 0.93009 1.21242 1.29927 0.93390 1.10800 0.92586 1.25023 0.95308 0.98998 0.95201 1.69963 1.36512 1.31716 1.15353 0.86637 0.79372 0.84667 0.77578 1.20760 1.21327 1.19885 1.22034 1.00608 0.96298 0.97919 1.21953 0.78871 1.00929 1.00184 0.90352 0.91059 0.90417 0.84636 0.84635 0.82393 0.83769 0.83833 0.89588 0.91770 0.89714 0.92357 0.92316 0.96603 0.96636 0.93076 0.90955 0.91951 0.91375 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 9.53 36.01 0.34 -0.42 16 2 C -0.12 -1.00 5.94 -104.01 -0.62 -1.61 16 3 C -0.08 -0.55 9.85 -39.32 -0.39 -0.94 16 4 C -0.17 -1.11 10.11 -39.30 -0.40 -1.51 16 5 C 0.10 0.81 11.18 -17.57 -0.20 0.61 16 6 N -0.47 -5.21 9.33 -9.90 -0.09 -5.30 16 7 C 0.15 1.58 6.70 -83.13 -0.56 1.03 16 8 C -0.05 -0.63 8.88 -37.13 -0.33 -0.96 16 9 C -0.15 -2.01 8.87 -37.46 -0.33 -2.34 16 10 C 0.54 8.52 7.62 -12.86 -0.10 8.42 16 11 O -0.55 -10.19 15.66 5.22 0.08 -10.11 16 12 N -0.60 -9.19 2.98 -174.59 -0.52 -9.71 16 13 C 0.11 1.75 6.41 -3.93 -0.03 1.73 16 14 C -0.12 -2.21 5.17 -26.83 -0.14 -2.35 16 15 C -0.08 -1.59 2.10 -90.58 -0.19 -1.78 16 16 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 17 C -0.52 -14.15 8.39 -34.44 -0.29 -14.44 16 18 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.13 -2.12 5.36 -26.62 -0.14 -2.26 16 26 C 0.10 1.40 6.32 -3.72 -0.02 1.37 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 29 H 0.08 0.53 6.34 -51.93 -0.33 0.20 16 30 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 31 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.16 0.90 8.06 -52.48 -0.42 0.47 16 33 H 0.14 1.62 5.82 -52.49 -0.31 1.32 16 34 H 0.14 1.73 5.25 -52.49 -0.28 1.46 16 35 H 0.09 1.44 6.99 -51.93 -0.36 1.07 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.68 6.91 -51.93 -0.36 1.32 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.96 5.37 -51.93 -0.28 0.68 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -33.10 372.05 -9.72 -42.82 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.91 Total: -0.39 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -3.60 Total: -13.39 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.12 Total: -41.10 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.10 -9.72 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493334451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.485 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds