Wall clock time and date at job start Tue Mar 31 2020 11:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38333 * 120.87016 * 2 1 4 4 C 1.38346 * 119.33235 * 180.23458 * 3 2 1 5 5 N 1.31967 * 121.14389 * 359.81329 * 4 3 2 6 6 C 1.31631 * 121.90388 * 359.97438 * 5 4 3 7 7 C 1.39833 * 120.52294 * 359.97438 * 6 5 4 8 8 C 1.47212 * 120.58185 * 179.97438 * 7 6 5 9 9 C 1.34810 * 120.00200 * 0.02562 * 8 7 6 10 10 C 1.46432 * 119.99813 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00393 * 355.02094 * 10 9 8 12 12 N 1.34778 * 119.99342 * 175.29724 * 10 9 8 13 13 C 1.46927 * 120.62393 * 184.68192 * 12 10 9 14 14 C 1.52767 * 109.00677 * 233.57947 * 13 12 10 15 15 C 1.53040 * 109.38542 * 305.59564 * 14 13 12 16 16 C 1.52995 * 109.45108 * 181.25372 * 15 14 13 17 17 C 1.50701 * 109.47400 * 64.93140 * 16 15 14 18 18 H 1.07997 * 119.99684 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00382 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47344 * 90.00091 * 21 19 17 23 23 H 1.48503 * 109.47348 * 210.00578 * 21 19 17 24 24 H 1.48504 * 109.47310 * 330.00048 * 21 19 17 25 25 C 1.53032 * 109.53887 * 61.23199 * 15 14 13 26 26 C 1.46919 * 120.63550 * 4.95976 * 12 10 9 27 27 H 1.09000 * 109.46890 * 270.20102 * 1 2 3 28 28 H 1.08996 * 109.47349 * 30.19955 * 1 2 3 29 29 H 1.08999 * 109.47217 * 150.20042 * 1 2 3 30 30 H 1.08000 * 120.32881 * 0.02562 * 3 2 1 31 31 H 1.08007 * 119.42585 * 179.78981 * 4 3 2 32 32 H 1.08001 * 119.73268 * 180.02562 * 6 5 4 33 33 H 1.08007 * 120.00027 * 180.02562 * 8 7 6 34 34 H 1.07994 * 119.99968 * 0.02562 * 9 8 7 35 35 H 1.08997 * 109.59347 * 353.41517 * 13 12 10 36 36 H 1.09000 * 109.58984 * 113.84484 * 13 12 10 37 37 H 1.08998 * 109.56633 * 185.55130 * 14 13 12 38 38 H 1.09004 * 109.35726 * 65.49901 * 14 13 12 39 39 H 1.09008 * 109.45262 * 301.21534 * 15 14 13 40 40 H 1.08997 * 109.47271 * 184.93490 * 16 15 14 41 41 H 1.09006 * 109.47072 * 304.93332 * 16 15 14 42 42 H 0.96996 * 120.00113 * 179.97438 * 20 19 17 43 43 H 1.09009 * 109.49741 * 178.68204 * 25 15 14 44 44 H 1.09002 * 109.49941 * 58.59360 * 25 15 14 45 45 H 1.09003 * 109.58734 * 246.15864 * 26 12 10 46 46 H 1.08998 * 109.58707 * 6.43750 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1874 0.0000 4 6 3.5997 1.1502 -0.0049 5 7 4.2517 0.0029 -0.0060 6 6 3.6238 -1.1540 -0.0019 7 6 2.2264 -1.2037 0.0043 8 6 1.5229 -2.4968 0.0083 9 6 2.2262 -3.6468 0.0066 10 6 1.5263 -4.9331 0.0112 11 8 0.3137 -4.9657 0.1080 12 7 2.2257 -6.0810 -0.0863 13 6 1.5334 -7.3731 -0.1861 14 6 2.0630 -8.3066 0.9010 15 6 3.5868 -8.3995 0.7928 16 6 4.1159 -9.3584 1.8611 17 6 3.6092 -10.7501 1.5823 18 1 2.9737 -10.9323 0.7283 19 6 3.9570 -11.7905 2.4175 20 7 4.7305 -11.5685 3.4577 21 14 3.3296 -13.5156 2.0715 22 1 4.2936 -14.2262 1.1935 23 1 3.1863 -14.2561 3.3507 24 1 2.0098 -13.4361 1.3952 25 6 4.2002 -7.0133 1.0030 26 6 3.6948 -6.0647 -0.0886 27 1 -0.3633 0.0036 1.0277 28 1 -0.3634 0.8881 -0.5169 29 1 -0.3633 -0.8918 -0.5107 30 1 1.6965 2.1338 0.0004 31 1 4.1554 2.0764 -0.0084 32 1 4.1926 -2.0722 -0.0024 33 1 0.4431 -2.5241 0.0127 34 1 3.3058 -3.6195 0.0027 35 1 0.4622 -7.2254 -0.0489 36 1 1.7211 -7.8136 -1.1653 37 1 1.6281 -9.2981 0.7745 38 1 1.7913 -7.9119 1.8801 39 1 3.8586 -8.7709 -0.1953 40 1 5.2057 -9.3579 1.8421 41 1 3.7695 -9.0356 2.8429 42 1 4.9748 -12.3004 4.0454 43 1 5.2866 -7.0842 0.9490 44 1 3.9083 -6.6308 1.9811 45 1 4.0624 -6.3963 -1.0597 46 1 4.0494 -5.0534 0.1104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493690331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:29 Heat of formation + Delta-G solvation = -1.895583 kcal Electronic energy + Delta-G solvation = -25058.702953 eV Core-core repulsion = 21526.731175 eV Total energy + Delta-G solvation = -3531.971778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.68025 -39.96304 -37.43462 -35.15103 -34.07007 -33.78369 -32.13089 -31.06136 -30.10366 -28.34018 -27.92187 -25.35597 -24.50873 -23.09659 -22.51914 -21.92435 -20.93613 -19.47493 -18.60717 -17.67486 -16.88015 -16.57277 -16.26588 -15.65784 -15.35401 -15.00691 -14.70093 -14.53298 -14.29796 -13.90869 -13.76878 -13.33273 -13.27341 -13.11279 -13.03725 -12.98032 -12.84011 -12.38820 -12.00034 -11.83259 -11.77227 -11.19582 -11.05681 -10.96526 -10.75019 -10.70536 -10.42790 -10.20700 -9.86609 -9.80214 -9.74402 -9.63527 -9.27258 -8.97841 -8.77860 -8.36262 -8.31796 -6.00487 -4.02341 0.09849 0.83138 1.68607 3.11543 3.23180 3.31149 3.37978 3.40647 3.54025 4.00293 4.22076 4.28259 4.33485 4.45072 4.50597 4.71283 4.85250 5.01857 5.04816 5.13330 5.18761 5.33775 5.34963 5.37335 5.39825 5.44743 5.57787 5.61865 5.65142 5.75409 5.81574 5.96594 6.00433 6.05582 6.12552 6.29693 6.34620 6.36953 6.52632 6.65640 6.97400 7.00820 7.10823 7.54118 7.57990 7.65489 7.80154 7.99004 8.24100 8.41626 9.04054 9.61578 11.10773 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.002281 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.363787 B =12274.873150 C =12919.208184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.022 4.022 3 C -0.177 4.177 4 C 0.105 3.895 5 N -0.488 5.488 6 C 0.120 3.880 7 C -0.122 4.122 8 C -0.033 4.033 9 C -0.195 4.195 10 C 0.544 3.456 11 O -0.553 6.553 12 N -0.598 5.598 13 C 0.109 3.891 14 C -0.119 4.119 15 C -0.081 4.081 16 C 0.028 3.972 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.131 4.131 26 C 0.104 3.896 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 25.128 -8.645 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.029 4.029 3 C -0.196 4.196 4 C -0.050 4.050 5 N -0.196 5.196 6 C -0.038 4.038 7 C -0.124 4.124 8 C -0.053 4.053 9 C -0.215 4.215 10 C 0.335 3.665 11 O -0.434 6.434 12 N -0.330 5.330 13 C -0.013 4.013 14 C -0.157 4.157 15 C -0.100 4.100 16 C -0.009 4.009 17 C -0.554 4.554 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.169 4.169 26 C -0.018 4.018 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.252 25.006 -8.455 26.737 hybrid contribution -0.952 -1.070 -0.014 1.432 sum -5.204 23.936 -8.469 25.918 Atomic orbital electron populations 1.20936 0.89864 1.03858 1.03480 1.20551 0.96910 0.92109 0.93380 1.22002 0.95618 0.98609 1.03402 1.22894 0.91726 0.96430 0.93988 1.67668 1.41044 0.98391 1.12502 1.23154 0.90790 0.96429 0.93408 1.19922 0.94665 0.93459 1.04400 1.22206 1.00462 0.89678 0.92945 1.23156 1.00702 0.92498 1.05149 1.18213 0.86993 0.84370 0.76952 1.90778 1.13920 1.87578 1.51093 1.48056 1.07239 1.06490 1.71175 1.21716 0.97744 0.82202 0.99662 1.21825 0.97102 0.99245 0.97480 1.21195 0.93790 0.93654 1.01318 1.19121 0.96048 0.92792 0.92959 1.21235 1.30353 0.93055 1.10793 0.92587 1.25022 0.95270 0.99013 0.95199 1.69959 1.36323 1.31997 1.15227 0.86639 0.79270 0.84771 0.77584 1.20744 1.21313 1.19884 1.22045 1.00601 0.96435 0.97856 1.21926 0.78975 1.00630 1.00282 0.89923 0.90673 0.90294 0.84477 0.82561 0.82258 0.84297 0.84962 0.89584 0.91767 0.89689 0.92354 0.92302 0.96602 0.96639 0.93052 0.90912 0.91916 0.91300 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 9.60 36.00 0.35 -0.39 16 2 C -0.02 -0.17 5.96 -103.84 -0.62 -0.79 16 3 C -0.18 -1.20 9.80 -39.51 -0.39 -1.59 16 4 C 0.11 0.82 11.17 -17.45 -0.19 0.63 16 5 N -0.49 -4.96 10.34 -12.83 -0.13 -5.09 16 6 C 0.12 1.15 10.59 -17.04 -0.18 0.97 16 7 C -0.12 -1.14 5.88 -104.91 -0.62 -1.76 16 8 C -0.03 -0.33 8.94 -37.15 -0.33 -0.66 16 9 C -0.19 -2.16 8.74 -37.50 -0.33 -2.49 16 10 C 0.54 8.03 7.62 -12.96 -0.10 7.93 16 11 O -0.55 -9.85 15.66 5.20 0.08 -9.77 16 12 N -0.60 -8.68 2.98 -174.67 -0.52 -9.20 16 13 C 0.11 1.70 6.41 -3.93 -0.03 1.67 16 14 C -0.12 -2.15 5.17 -26.83 -0.14 -2.29 16 15 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 16 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 17 C -0.52 -14.02 8.39 -34.44 -0.29 -14.31 16 18 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.13 -2.02 5.36 -26.62 -0.14 -2.17 16 26 C 0.10 1.30 6.32 -3.72 -0.02 1.27 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 29 H 0.08 0.49 6.46 -51.93 -0.34 0.16 16 30 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.16 1.26 6.19 -52.49 -0.32 0.93 16 33 H 0.14 1.45 5.96 -52.48 -0.31 1.14 16 34 H 0.13 1.16 3.94 -52.49 -0.21 0.95 16 35 H 0.09 1.40 6.99 -51.93 -0.36 1.04 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.65 6.91 -51.93 -0.36 1.29 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.76 5.36 -51.93 -0.28 0.48 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -33.03 369.76 -9.48 -42.51 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.76 Total: -0.88 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -3.44 Total: -13.68 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.08 Total: -40.15 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.03 -9.48 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493690331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.617 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds