Wall clock time and date at job start Tue Mar 31 2020 11:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38333 * 120.87016 * 2 1 4 4 C 1.38346 * 119.33235 * 180.23458 * 3 2 1 5 5 N 1.31967 * 121.14389 * 359.81329 * 4 3 2 6 6 C 1.31631 * 121.90388 * 359.97438 * 5 4 3 7 7 C 1.39833 * 120.52294 * 359.97438 * 6 5 4 8 8 C 1.47212 * 120.58185 * 179.97438 * 7 6 5 9 9 C 1.34810 * 120.00200 * 0.02562 * 8 7 6 10 10 C 1.46432 * 119.99813 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00393 * 355.02094 * 10 9 8 12 12 N 1.34778 * 119.99342 * 175.29724 * 10 9 8 13 13 C 1.46927 * 120.62393 * 184.68192 * 12 10 9 14 14 C 1.52767 * 109.00677 * 233.57947 * 13 12 10 15 15 C 1.53040 * 109.38542 * 305.59564 * 14 13 12 16 16 C 1.52995 * 109.45108 * 181.25372 * 15 14 13 17 17 C 1.50701 * 109.47400 * 64.93140 * 16 15 14 18 18 H 1.07997 * 119.99684 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00382 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47344 * 90.00091 * 21 19 17 23 23 H 1.48503 * 109.47348 * 210.00578 * 21 19 17 24 24 H 1.48504 * 109.47310 * 330.00048 * 21 19 17 25 25 C 1.53032 * 109.53887 * 61.23199 * 15 14 13 26 26 C 1.46919 * 120.63550 * 4.95976 * 12 10 9 27 27 H 1.09000 * 109.46890 * 270.20102 * 1 2 3 28 28 H 1.08996 * 109.47349 * 30.19955 * 1 2 3 29 29 H 1.08999 * 109.47217 * 150.20042 * 1 2 3 30 30 H 1.08000 * 120.32881 * 0.02562 * 3 2 1 31 31 H 1.08007 * 119.42585 * 179.78981 * 4 3 2 32 32 H 1.08001 * 119.73268 * 180.02562 * 6 5 4 33 33 H 1.08007 * 120.00027 * 180.02562 * 8 7 6 34 34 H 1.07994 * 119.99968 * 0.02562 * 9 8 7 35 35 H 1.08997 * 109.59347 * 353.41517 * 13 12 10 36 36 H 1.09000 * 109.58984 * 113.84484 * 13 12 10 37 37 H 1.08998 * 109.56633 * 185.55130 * 14 13 12 38 38 H 1.09004 * 109.35726 * 65.49901 * 14 13 12 39 39 H 1.09008 * 109.45262 * 301.21534 * 15 14 13 40 40 H 1.08997 * 109.47271 * 184.93490 * 16 15 14 41 41 H 1.09006 * 109.47072 * 304.93332 * 16 15 14 42 42 H 0.96996 * 120.00113 * 179.97438 * 20 19 17 43 43 H 1.09009 * 109.49741 * 178.68204 * 25 15 14 44 44 H 1.09002 * 109.49941 * 58.59360 * 25 15 14 45 45 H 1.09003 * 109.58734 * 246.15864 * 26 12 10 46 46 H 1.08998 * 109.58707 * 6.43750 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1874 0.0000 4 6 3.5997 1.1502 -0.0049 5 7 4.2517 0.0029 -0.0060 6 6 3.6238 -1.1540 -0.0019 7 6 2.2264 -1.2037 0.0043 8 6 1.5229 -2.4968 0.0083 9 6 2.2262 -3.6468 0.0066 10 6 1.5263 -4.9331 0.0112 11 8 0.3137 -4.9657 0.1080 12 7 2.2257 -6.0810 -0.0863 13 6 1.5334 -7.3731 -0.1861 14 6 2.0630 -8.3066 0.9010 15 6 3.5868 -8.3995 0.7928 16 6 4.1159 -9.3584 1.8611 17 6 3.6092 -10.7501 1.5823 18 1 2.9737 -10.9323 0.7283 19 6 3.9570 -11.7905 2.4175 20 7 4.7305 -11.5685 3.4577 21 14 3.3296 -13.5156 2.0715 22 1 4.2936 -14.2262 1.1935 23 1 3.1863 -14.2561 3.3507 24 1 2.0098 -13.4361 1.3952 25 6 4.2002 -7.0133 1.0030 26 6 3.6948 -6.0647 -0.0886 27 1 -0.3633 0.0036 1.0277 28 1 -0.3634 0.8881 -0.5169 29 1 -0.3633 -0.8918 -0.5107 30 1 1.6965 2.1338 0.0004 31 1 4.1554 2.0764 -0.0084 32 1 4.1926 -2.0722 -0.0024 33 1 0.4431 -2.5241 0.0127 34 1 3.3058 -3.6195 0.0027 35 1 0.4622 -7.2254 -0.0489 36 1 1.7211 -7.8136 -1.1653 37 1 1.6281 -9.2981 0.7745 38 1 1.7913 -7.9119 1.8801 39 1 3.8586 -8.7709 -0.1953 40 1 5.2057 -9.3579 1.8421 41 1 3.7695 -9.0356 2.8429 42 1 4.9748 -12.3004 4.0454 43 1 5.2866 -7.0842 0.9490 44 1 3.9083 -6.6308 1.9811 45 1 4.0624 -6.3963 -1.0597 46 1 4.0494 -5.0534 0.1104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493690331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:28 Heat of formation + Delta-G solvation = -20.440359 kcal Electronic energy + Delta-G solvation = -25059.507115 eV Core-core repulsion = 21526.731175 eV Total energy + Delta-G solvation = -3532.775940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42768 -40.99962 -38.77026 -35.87565 -35.71631 -34.49136 -33.95064 -32.22290 -30.94987 -29.83678 -28.67653 -26.61828 -25.77415 -24.17718 -23.72709 -22.95831 -22.03101 -20.80486 -19.66450 -18.71145 -18.36258 -17.57279 -17.33208 -16.58756 -16.55161 -16.27172 -15.98327 -15.32011 -15.29320 -15.08296 -14.81533 -14.69832 -14.52771 -14.23704 -13.94216 -13.79430 -13.67876 -13.56626 -13.46810 -13.01819 -12.78932 -12.74900 -12.49807 -12.37460 -12.32555 -12.08933 -11.79134 -11.73981 -11.32875 -11.11376 -11.03791 -10.71964 -10.51799 -10.43042 -10.35755 -9.71819 -9.35632 -8.17086 -6.26070 -0.62167 0.25161 0.89592 1.40193 1.40932 1.51504 2.02181 2.24496 2.41987 2.88126 3.16491 3.34571 3.49021 3.71766 3.77435 3.83729 3.87894 4.00917 4.07666 4.12726 4.20704 4.27114 4.42796 4.51263 4.57937 4.61075 4.69143 4.71266 4.79003 4.83803 4.87193 4.89511 4.96374 5.05260 5.13333 5.15647 5.26348 5.32584 5.35348 5.38635 5.43935 5.56325 5.61763 5.72501 5.81371 5.90390 6.29635 6.44007 6.90734 6.97251 7.11924 7.42399 8.94644 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.002281 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.363787 B =12274.873150 C =12919.208184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.026 4.026 3 C -0.173 4.173 4 C 0.101 3.899 5 N -0.517 5.517 6 C 0.112 3.888 7 C -0.141 4.141 8 C -0.012 4.012 9 C -0.210 4.210 10 C 0.541 3.459 11 O -0.593 6.593 12 N -0.602 5.602 13 C 0.117 3.883 14 C -0.110 4.110 15 C -0.074 4.074 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.063 0.937 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.958 3.042 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.126 4.126 26 C 0.109 3.891 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.168 0.832 31 H 0.183 0.817 32 H 0.171 0.829 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.065 0.935 40 H -0.008 1.008 41 H -0.017 1.017 42 H 0.261 0.739 43 H 0.083 0.917 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 27.123 -10.299 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.034 4.034 3 C -0.193 4.193 4 C -0.054 4.054 5 N -0.226 5.226 6 C -0.046 4.046 7 C -0.143 4.143 8 C -0.033 4.033 9 C -0.230 4.230 10 C 0.333 3.667 11 O -0.476 6.476 12 N -0.333 5.333 13 C -0.005 4.005 14 C -0.149 4.149 15 C -0.092 4.092 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.081 0.919 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.784 3.216 22 H -0.198 1.198 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.165 4.165 26 C -0.012 4.012 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.186 0.814 31 H 0.200 0.800 32 H 0.188 0.812 33 H 0.151 0.849 34 H 0.175 0.825 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.011 0.989 41 H 0.001 0.999 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.364 27.010 -10.126 29.174 hybrid contribution -0.922 -1.553 0.543 1.886 sum -5.286 25.457 -9.583 27.710 Atomic orbital electron populations 1.20997 0.88617 1.04559 1.04001 1.20892 0.97976 0.92107 0.92394 1.22334 0.95364 0.99473 1.02109 1.23432 0.92589 0.96736 0.92671 1.67700 1.41925 0.99174 1.13763 1.23366 0.91008 0.96944 0.93253 1.19919 0.94820 0.93421 1.06166 1.22254 1.00240 0.90101 0.90672 1.23040 1.01669 0.90719 1.07539 1.18759 0.86669 0.85391 0.75839 1.90753 1.15718 1.88167 1.53006 1.48135 1.08126 1.05967 1.71045 1.21508 0.97276 0.82498 0.99221 1.21675 0.96555 0.99046 0.97586 1.21046 0.94267 0.94620 0.99298 1.19019 0.94513 0.93601 0.93306 1.21680 1.29932 0.94256 1.10741 0.91892 1.25943 0.95562 1.03504 0.95043 1.70097 1.37859 1.33294 1.16393 0.85544 0.79128 0.79507 0.77470 1.19801 1.21259 1.18782 1.21961 1.01106 0.94775 0.98621 1.22050 0.77530 1.01735 0.99914 0.89406 0.88630 0.90981 0.81426 0.80037 0.81224 0.84925 0.82498 0.90469 0.89979 0.91389 0.94383 0.91674 0.98915 0.99900 0.93031 0.89848 0.93204 0.89229 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.60 71.24 0.68 -0.53 16 2 C -0.03 -0.36 5.96 -19.36 -0.12 -0.47 16 3 C -0.17 -1.85 9.80 22.32 0.22 -1.63 16 4 C 0.10 1.32 11.17 84.70 0.95 2.26 16 5 N -0.52 -9.54 10.34 -194.52 -2.01 -11.55 16 6 C 0.11 1.95 10.59 85.11 0.90 2.85 16 7 C -0.14 -2.41 5.88 -20.05 -0.12 -2.52 16 8 C -0.01 -0.24 8.94 23.84 0.21 -0.02 16 9 C -0.21 -4.34 8.74 23.62 0.21 -4.13 16 10 C 0.54 15.53 7.62 86.38 0.66 16.19 16 11 O -0.59 -21.26 15.66 -4.33 -0.07 -21.33 16 12 N -0.60 -16.74 2.98 -824.76 -2.46 -19.20 16 13 C 0.12 3.62 6.41 86.22 0.55 4.18 16 14 C -0.11 -4.10 5.17 30.53 0.16 -3.94 16 15 C -0.07 -2.82 2.10 -10.77 -0.02 -2.85 16 16 C 0.03 1.67 4.45 29.85 0.13 1.80 16 17 C -0.53 -29.27 8.39 25.60 0.21 -29.05 16 18 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 19 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 20 N -0.94 -57.08 13.29 21.45 0.28 -56.80 16 21 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 25 C -0.13 -3.80 5.36 30.67 0.16 -3.64 16 26 C 0.11 2.45 6.32 86.36 0.55 3.00 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 0.53 8.10 -2.39 -0.02 0.51 16 29 H 0.07 0.81 6.46 -2.39 -0.02 0.79 16 30 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.17 2.34 6.19 -2.91 -0.02 2.32 16 33 H 0.13 2.71 5.96 -2.91 -0.02 2.70 16 34 H 0.16 2.33 3.94 -2.91 -0.01 2.32 16 35 H 0.08 2.54 6.99 -2.39 -0.02 2.52 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.71 6.91 -2.39 -0.02 2.70 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 40 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 42 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.11 1.80 5.36 -2.39 -0.01 1.78 16 Total: -1.00 -73.97 369.76 4.56 -69.41 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.98 Total: 11.37 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 5.80 Total: -18.24 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -4.18 Total: -87.55 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.07 Total: -21.33 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -73.97 4.56 -69.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493690331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.969 kcal (2) G-P(sol) polarization free energy of solvation -73.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds