Wall clock time and date at job start Tue Mar 31 2020 10:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31657 * 119.73567 * 2 1 4 4 C 1.31940 * 121.90672 * 179.75280 * 3 2 1 5 5 C 1.38396 * 121.13732 * 0.52902 * 4 3 2 6 6 C 1.38294 * 119.33065 * 359.73931 * 5 4 3 7 7 C 1.39797 * 119.74096 * 180.27579 * 2 1 3 8 8 C 1.47211 * 120.58282 * 359.95035 * 7 2 1 9 9 C 1.34806 * 120.00196 * 180.02562 * 8 7 2 10 10 C 1.46423 * 119.99912 * 180.02562 * 9 8 7 11 11 O 1.21690 * 120.00532 * 354.72744 * 10 9 8 12 12 N 1.34779 * 119.99546 * 174.72479 * 10 9 8 13 13 C 1.46925 * 120.63374 * 4.82259 * 12 10 9 14 14 C 1.52763 * 109.01024 * 233.58260 * 13 12 10 15 15 C 1.53048 * 109.38017 * 305.58790 * 14 13 12 16 16 C 1.53003 * 109.44524 * 181.25543 * 15 14 13 17 17 C 1.50699 * 109.47657 * 64.93514 * 16 15 14 18 18 H 1.08007 * 119.99136 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00252 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99998 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99817 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47400 * 89.99928 * 21 19 17 23 23 H 1.48511 * 109.46701 * 209.99494 * 21 19 17 24 24 H 1.48493 * 109.47075 * 329.99346 * 21 19 17 25 25 C 1.53033 * 109.53866 * 61.24147 * 15 14 13 26 26 C 1.46928 * 120.62757 * 185.09807 * 12 10 9 27 27 H 1.09000 * 109.46600 * 269.72655 * 1 2 3 28 28 H 1.08997 * 109.46845 * 29.72798 * 1 2 3 29 29 H 1.08999 * 109.46653 * 149.72851 * 1 2 3 30 30 H 1.07997 * 119.43315 * 180.24665 * 4 3 2 31 31 H 1.08002 * 120.33643 * 179.76400 * 5 4 3 32 32 H 1.07995 * 120.86532 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.00080 * 0.02562 * 8 7 2 34 34 H 1.08000 * 119.99723 * 0.02562 * 9 8 7 35 35 H 1.09003 * 109.58397 * 353.41964 * 13 12 10 36 36 H 1.09001 * 109.58966 * 113.83898 * 13 12 10 37 37 H 1.08993 * 109.56595 * 185.55174 * 14 13 12 38 38 H 1.08996 * 109.35746 * 65.49387 * 14 13 12 39 39 H 1.08994 * 109.45754 * 301.21543 * 15 14 13 40 40 H 1.08994 * 109.46757 * 184.93982 * 16 15 14 41 41 H 1.09006 * 109.46781 * 304.93623 * 16 15 14 42 42 H 0.97006 * 120.00050 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.50023 * 178.68145 * 25 15 14 44 44 H 1.09001 * 109.50212 * 58.58495 * 25 15 14 45 45 H 1.08996 * 109.58878 * 246.15582 * 26 12 10 46 46 H 1.09001 * 109.58885 * 6.44422 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1600 1.1432 0.0000 4 6 3.4785 1.1932 0.0048 5 6 4.2385 0.0366 -0.0008 6 6 3.6029 -1.1916 -0.0062 7 6 2.2005 -1.2138 -0.0058 8 6 1.4717 -2.4928 -0.0109 9 6 2.1523 -3.6565 -0.0160 10 6 1.4273 -4.9286 -0.0216 11 8 0.2143 -4.9382 0.0752 12 7 2.1035 -6.0890 -0.1340 13 6 3.5726 -6.1013 -0.1457 14 6 4.0541 -6.8520 -1.3860 15 6 3.4133 -8.2414 -1.4194 16 6 3.9187 -9.0062 -2.6444 17 6 5.3993 -9.2514 -2.5079 18 1 5.9270 -8.8976 -1.6344 19 6 6.0801 -9.9284 -3.4974 20 7 7.3723 -10.1420 -3.3785 21 14 5.1672 -10.5410 -5.0076 22 1 5.1865 -9.4910 -6.0575 23 1 5.8282 -11.7674 -5.5219 24 1 3.7614 -10.8517 -4.6441 25 6 1.8914 -8.1014 -1.4979 26 6 1.3854 -7.3653 -0.2532 27 1 -0.3632 -0.0049 1.0277 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3632 -0.8876 -0.5181 30 1 3.9732 2.1532 0.0087 31 1 5.3171 0.0926 -0.0006 32 1 4.1716 -2.1097 -0.0110 33 1 0.3917 -2.4990 -0.0105 34 1 3.2322 -3.6504 -0.0159 35 1 3.9464 -5.0777 -0.1717 36 1 3.9410 -6.6043 0.7484 37 1 5.1389 -6.9524 -1.3537 38 1 3.7660 -6.2970 -2.2787 39 1 3.6816 -8.7868 -0.5146 40 1 3.3975 -9.9606 -2.7173 41 1 3.7290 -8.4190 -3.5430 42 1 7.8513 -10.6179 -4.0749 43 1 1.4369 -9.0909 -1.5453 44 1 1.6237 -7.5346 -2.3897 45 1 1.5718 -7.9736 0.6319 46 1 0.3162 -7.1756 -0.3477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493771067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:55 Heat of formation + Delta-G solvation = 2.694896 kcal Electronic energy + Delta-G solvation = -25216.560177 eV Core-core repulsion = 21684.787457 eV Total energy + Delta-G solvation = -3531.772720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66511 -40.02442 -37.54044 -34.99622 -34.11473 -33.45585 -32.25413 -31.34874 -30.45196 -28.67591 -27.85023 -25.59642 -24.39241 -23.05088 -22.56597 -21.89630 -20.74814 -19.50835 -18.62060 -17.85258 -16.82239 -16.72068 -16.59416 -15.58436 -15.28414 -15.12367 -14.82925 -14.42109 -14.07604 -13.99489 -13.75716 -13.47798 -13.33034 -13.24782 -12.93425 -12.80853 -12.55939 -12.48855 -12.33458 -12.09463 -11.56460 -11.49606 -11.20378 -11.08836 -10.92870 -10.69849 -10.38451 -9.98372 -9.91813 -9.85648 -9.81773 -9.64636 -9.51166 -9.10625 -8.72996 -8.57722 -8.39275 -6.08646 -4.06216 0.11480 0.88373 1.69330 3.04675 3.21826 3.27427 3.35643 3.39050 3.54409 3.92433 4.24220 4.35643 4.39600 4.41669 4.59794 4.75256 4.83186 5.09082 5.16043 5.23081 5.24398 5.26270 5.28337 5.33021 5.38782 5.40009 5.56639 5.58255 5.68643 5.69431 5.77438 5.86081 5.96717 5.97362 6.17327 6.23079 6.27154 6.31956 6.38277 6.57295 6.74564 6.80575 6.90849 7.22495 7.37967 7.48607 7.61239 7.75612 8.18687 8.48827 8.95477 9.54672 11.04500 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.002674 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.649324 B =10469.279243 C =11487.024232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.150 3.850 3 N -0.488 5.488 4 C 0.108 3.892 5 C -0.178 4.178 6 C -0.057 4.057 7 C -0.121 4.121 8 C -0.031 4.031 9 C -0.197 4.197 10 C 0.546 3.454 11 O -0.555 6.555 12 N -0.599 5.599 13 C 0.101 3.899 14 C -0.122 4.122 15 C -0.072 4.072 16 C -0.009 4.009 17 C -0.516 4.516 18 H 0.073 0.927 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.266 1.266 25 C -0.132 4.132 26 C 0.113 3.887 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.016 0.984 41 H 0.010 0.990 42 H 0.262 0.738 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 19.022 8.310 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.012 3.988 3 N -0.197 5.197 4 C -0.048 4.048 5 C -0.198 4.198 6 C -0.083 4.083 7 C -0.123 4.123 8 C -0.051 4.051 9 C -0.218 4.218 10 C 0.337 3.663 11 O -0.435 6.435 12 N -0.331 5.331 13 C -0.021 4.021 14 C -0.160 4.160 15 C -0.091 4.091 16 C -0.047 4.047 17 C -0.554 4.554 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.171 4.171 26 C -0.009 4.009 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.175 0.825 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.427 19.679 8.270 23.757 hybrid contribution 0.577 -1.256 -0.955 1.680 sum -9.850 18.423 7.315 22.134 Atomic orbital electron populations 1.20840 0.88454 1.04014 1.03598 1.21564 0.97066 0.87311 0.92899 1.67497 1.10109 1.29008 1.13047 1.22881 0.89315 0.98716 0.93918 1.22112 1.01832 0.93150 1.02711 1.21907 0.93480 0.98939 0.93951 1.19843 0.93850 0.94144 1.04479 1.22255 1.00450 0.89763 0.92648 1.23142 1.00759 0.92443 1.05436 1.18222 0.87052 0.84243 0.76830 1.90771 1.13881 1.87578 1.51316 1.48059 1.07528 1.06447 1.71039 1.21946 0.78481 1.01424 1.00225 1.21857 1.02376 0.95973 0.95790 1.21006 0.91701 0.95476 1.00897 1.19619 0.97207 0.94902 0.92939 1.21123 0.91505 1.36066 1.06732 0.90854 1.25022 0.94688 0.95595 0.98186 1.69907 1.07720 1.42164 1.34513 0.86814 0.80573 0.78547 0.83556 1.20402 1.21466 1.19054 1.22071 0.97995 1.00020 0.96978 1.21661 0.97281 0.83385 0.98597 0.89875 0.90104 0.90021 0.82511 0.84274 0.84199 0.84097 0.84965 0.90283 0.91164 0.89057 0.92292 0.91657 0.96576 0.97132 0.92773 0.91019 0.92067 0.91592 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.69 36.01 0.35 -0.52 16 2 C 0.15 1.50 6.83 -82.08 -0.56 0.94 16 3 N -0.49 -5.07 10.26 -9.07 -0.09 -5.16 16 4 C 0.11 0.89 11.17 -17.45 -0.19 0.70 16 5 C -0.18 -1.34 10.10 -39.50 -0.40 -1.74 16 6 C -0.06 -0.49 9.52 -38.80 -0.37 -0.86 16 7 C -0.12 -1.19 5.88 -104.91 -0.62 -1.81 16 8 C -0.03 -0.32 8.89 -37.16 -0.33 -0.65 16 9 C -0.20 -2.21 8.76 -37.51 -0.33 -2.54 16 10 C 0.55 7.82 7.62 -12.96 -0.10 7.73 16 11 O -0.55 -9.48 15.68 5.20 0.08 -9.40 16 12 N -0.60 -8.35 2.98 -174.66 -0.52 -8.87 16 13 C 0.10 1.29 6.32 -3.93 -0.02 1.27 16 14 C -0.12 -1.96 5.17 -26.83 -0.14 -2.10 16 15 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 16 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 17 C -0.52 -13.82 8.94 -34.44 -0.31 -14.13 16 18 H 0.07 2.08 7.30 -52.48 -0.38 1.70 16 19 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 20 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 21 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 25 C -0.13 -2.04 5.36 -26.61 -0.14 -2.19 16 26 C 0.11 1.59 6.42 -3.70 -0.02 1.56 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.58 6.32 -51.93 -0.33 0.25 16 30 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.14 0.97 6.29 -52.49 -0.33 0.64 16 33 H 0.14 1.48 5.85 -52.49 -0.31 1.17 16 34 H 0.13 1.20 3.93 -52.49 -0.21 1.00 16 35 H 0.08 0.81 5.30 -51.93 -0.28 0.53 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.62 6.91 -51.93 -0.36 1.27 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.25 7.03 -51.93 -0.37 0.88 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -32.74 366.12 -9.20 -41.94 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.72 Total: 0.00 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -3.57 Total: -14.37 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.16 Total: -40.32 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.74 -9.20 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493771067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.639 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds