Wall clock time and date at job start Tue Mar 31 2020 10:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31657 * 119.73567 * 2 1 4 4 C 1.31940 * 121.90672 * 179.75280 * 3 2 1 5 5 C 1.38396 * 121.13732 * 0.52902 * 4 3 2 6 6 C 1.38294 * 119.33065 * 359.73931 * 5 4 3 7 7 C 1.39797 * 119.74096 * 180.27579 * 2 1 3 8 8 C 1.47211 * 120.58282 * 359.95035 * 7 2 1 9 9 C 1.34806 * 120.00196 * 180.02562 * 8 7 2 10 10 C 1.46423 * 119.99912 * 180.02562 * 9 8 7 11 11 O 1.21690 * 120.00532 * 354.72744 * 10 9 8 12 12 N 1.34779 * 119.99546 * 174.72479 * 10 9 8 13 13 C 1.46925 * 120.63374 * 4.82259 * 12 10 9 14 14 C 1.52763 * 109.01024 * 233.58260 * 13 12 10 15 15 C 1.53048 * 109.38017 * 305.58790 * 14 13 12 16 16 C 1.53003 * 109.44524 * 181.25543 * 15 14 13 17 17 C 1.50699 * 109.47657 * 64.93514 * 16 15 14 18 18 H 1.08007 * 119.99136 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00252 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99998 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99817 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47400 * 89.99928 * 21 19 17 23 23 H 1.48511 * 109.46701 * 209.99494 * 21 19 17 24 24 H 1.48493 * 109.47075 * 329.99346 * 21 19 17 25 25 C 1.53033 * 109.53866 * 61.24147 * 15 14 13 26 26 C 1.46928 * 120.62757 * 185.09807 * 12 10 9 27 27 H 1.09000 * 109.46600 * 269.72655 * 1 2 3 28 28 H 1.08997 * 109.46845 * 29.72798 * 1 2 3 29 29 H 1.08999 * 109.46653 * 149.72851 * 1 2 3 30 30 H 1.07997 * 119.43315 * 180.24665 * 4 3 2 31 31 H 1.08002 * 120.33643 * 179.76400 * 5 4 3 32 32 H 1.07995 * 120.86532 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.00080 * 0.02562 * 8 7 2 34 34 H 1.08000 * 119.99723 * 0.02562 * 9 8 7 35 35 H 1.09003 * 109.58397 * 353.41964 * 13 12 10 36 36 H 1.09001 * 109.58966 * 113.83898 * 13 12 10 37 37 H 1.08993 * 109.56595 * 185.55174 * 14 13 12 38 38 H 1.08996 * 109.35746 * 65.49387 * 14 13 12 39 39 H 1.08994 * 109.45754 * 301.21543 * 15 14 13 40 40 H 1.08994 * 109.46757 * 184.93982 * 16 15 14 41 41 H 1.09006 * 109.46781 * 304.93623 * 16 15 14 42 42 H 0.97006 * 120.00050 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.50023 * 178.68145 * 25 15 14 44 44 H 1.09001 * 109.50212 * 58.58495 * 25 15 14 45 45 H 1.08996 * 109.58878 * 246.15582 * 26 12 10 46 46 H 1.09001 * 109.58885 * 6.44422 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1600 1.1432 0.0000 4 6 3.4785 1.1932 0.0048 5 6 4.2385 0.0366 -0.0008 6 6 3.6029 -1.1916 -0.0062 7 6 2.2005 -1.2138 -0.0058 8 6 1.4717 -2.4928 -0.0109 9 6 2.1523 -3.6565 -0.0160 10 6 1.4273 -4.9286 -0.0216 11 8 0.2143 -4.9382 0.0752 12 7 2.1035 -6.0890 -0.1340 13 6 3.5726 -6.1013 -0.1457 14 6 4.0541 -6.8520 -1.3860 15 6 3.4133 -8.2414 -1.4194 16 6 3.9187 -9.0062 -2.6444 17 6 5.3993 -9.2514 -2.5079 18 1 5.9270 -8.8976 -1.6344 19 6 6.0801 -9.9284 -3.4974 20 7 7.3723 -10.1420 -3.3785 21 14 5.1672 -10.5410 -5.0076 22 1 5.1865 -9.4910 -6.0575 23 1 5.8282 -11.7674 -5.5219 24 1 3.7614 -10.8517 -4.6441 25 6 1.8914 -8.1014 -1.4979 26 6 1.3854 -7.3653 -0.2532 27 1 -0.3632 -0.0049 1.0277 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3632 -0.8876 -0.5181 30 1 3.9732 2.1532 0.0087 31 1 5.3171 0.0926 -0.0006 32 1 4.1716 -2.1097 -0.0110 33 1 0.3917 -2.4990 -0.0105 34 1 3.2322 -3.6504 -0.0159 35 1 3.9464 -5.0777 -0.1717 36 1 3.9410 -6.6043 0.7484 37 1 5.1389 -6.9524 -1.3537 38 1 3.7660 -6.2970 -2.2787 39 1 3.6816 -8.7868 -0.5146 40 1 3.3975 -9.9606 -2.7173 41 1 3.7290 -8.4190 -3.5430 42 1 7.8513 -10.6179 -4.0749 43 1 1.4369 -9.0909 -1.5453 44 1 1.6237 -7.5346 -2.3897 45 1 1.5718 -7.9736 0.6319 46 1 0.3162 -7.1756 -0.3477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493771067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:54 Heat of formation + Delta-G solvation = -15.796249 kcal Electronic energy + Delta-G solvation = -25217.362013 eV Core-core repulsion = 21684.787457 eV Total energy + Delta-G solvation = -3532.574556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43835 -41.02331 -38.80274 -35.79090 -35.68075 -34.12308 -34.02825 -32.43294 -31.37883 -30.29770 -28.52254 -26.75360 -25.55357 -24.20635 -23.60316 -22.88709 -21.96344 -20.79308 -19.61130 -18.94090 -18.69108 -17.54430 -17.34515 -16.57439 -16.38965 -16.18974 -16.01602 -15.51564 -15.33190 -15.09788 -14.90859 -14.68447 -14.39756 -14.23732 -14.16949 -14.08652 -13.59093 -13.39934 -13.21315 -13.13385 -13.02128 -12.84981 -12.41892 -12.30502 -12.13776 -11.96100 -11.85680 -11.72855 -11.39626 -11.24837 -10.93607 -10.80279 -10.71001 -10.51098 -10.48214 -9.70300 -9.31232 -8.24906 -6.26008 -0.62916 0.25441 0.89213 1.35544 1.38045 1.48466 2.00184 2.24990 2.37969 2.85577 3.11025 3.28813 3.44462 3.68451 3.76381 3.82418 3.95190 4.00042 4.06152 4.14612 4.18735 4.23528 4.41902 4.56496 4.58947 4.65083 4.65352 4.67198 4.71764 4.80730 4.87447 4.91778 4.94000 5.04363 5.12103 5.16393 5.17228 5.22224 5.25657 5.38749 5.42244 5.45175 5.61881 5.71439 5.73579 5.74903 6.34886 6.41694 6.81514 6.96562 7.11049 7.37998 8.91135 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.002674 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.649324 B =10469.279243 C =11487.024232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.137 3.863 3 N -0.514 5.514 4 C 0.103 3.897 5 C -0.177 4.177 6 C -0.062 4.062 7 C -0.139 4.139 8 C -0.014 4.014 9 C -0.211 4.211 10 C 0.543 3.457 11 O -0.589 6.589 12 N -0.601 5.601 13 C 0.109 3.891 14 C -0.117 4.117 15 C -0.070 4.070 16 C -0.008 4.008 17 C -0.513 4.513 18 H 0.044 0.956 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.939 3.061 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.250 1.250 25 C -0.123 4.123 26 C 0.116 3.884 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.183 0.817 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.014 0.986 41 H 0.011 0.989 42 H 0.263 0.737 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 20.227 8.368 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.001 4.001 3 N -0.223 5.223 4 C -0.053 4.053 5 C -0.196 4.196 6 C -0.087 4.087 7 C -0.141 4.141 8 C -0.034 4.034 9 C -0.231 4.231 10 C 0.336 3.664 11 O -0.473 6.473 12 N -0.332 5.332 13 C -0.013 4.013 14 C -0.155 4.155 15 C -0.089 4.089 16 C -0.045 4.045 17 C -0.551 4.551 18 H 0.063 0.937 19 C -0.192 4.192 20 N -0.592 5.592 21 Si 0.764 3.236 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.174 1.174 25 C -0.161 4.161 26 C -0.007 4.007 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.200 0.800 31 H 0.185 0.815 32 H 0.175 0.825 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.972 20.888 8.336 25.024 hybrid contribution 0.804 -1.523 -0.919 1.952 sum -10.168 19.365 7.418 23.095 Atomic orbital electron populations 1.20882 0.87623 1.04248 1.04157 1.21856 0.97950 0.87467 0.92848 1.67541 1.11336 1.29299 1.14153 1.23429 0.88894 1.00342 0.92669 1.22444 1.03263 0.92397 1.01501 1.22227 0.93107 1.00230 0.93137 1.19861 0.94608 0.93603 1.06034 1.22289 1.00338 0.90048 0.90734 1.23059 1.01599 0.91003 1.07442 1.18667 0.86772 0.85081 0.75926 1.90751 1.15405 1.88061 1.53035 1.48121 1.07880 1.06390 1.70842 1.21938 0.77820 1.02847 0.98664 1.21738 1.00890 0.95374 0.97543 1.20926 0.93634 0.95890 0.98429 1.19589 0.94346 0.95474 0.95120 1.21453 0.93676 1.34662 1.05337 0.93730 1.25894 0.95416 0.96268 1.01580 1.70050 1.09492 1.43848 1.35855 0.85814 0.79950 0.78006 0.79804 1.19666 1.21423 1.17387 1.21949 0.95833 1.00753 0.97543 1.21605 0.97105 0.83644 0.98311 0.89127 0.89875 0.89749 0.79987 0.81459 0.82497 0.84631 0.82758 0.87266 0.90139 0.91235 0.92712 0.92163 0.96737 0.97114 0.92783 0.90143 0.92617 0.90340 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.69 71.24 0.69 -0.97 16 2 C 0.14 2.59 6.83 42.96 0.29 2.88 16 3 N -0.51 -10.00 10.26 -182.61 -1.87 -11.88 16 4 C 0.10 1.47 11.17 84.71 0.95 2.42 16 5 C -0.18 -2.16 10.10 22.32 0.23 -1.93 16 6 C -0.06 -0.91 9.52 22.77 0.22 -0.69 16 7 C -0.14 -2.52 5.88 -20.05 -0.12 -2.63 16 8 C -0.01 -0.27 8.89 23.84 0.21 -0.06 16 9 C -0.21 -4.32 8.76 23.61 0.21 -4.11 16 10 C 0.54 14.77 7.62 86.37 0.66 15.43 16 11 O -0.59 -19.72 15.68 -4.32 -0.07 -19.79 16 12 N -0.60 -15.67 2.98 -824.73 -2.46 -18.12 16 13 C 0.11 2.55 6.32 86.22 0.54 3.09 16 14 C -0.12 -3.67 5.17 30.53 0.16 -3.51 16 15 C -0.07 -2.45 2.10 -10.77 -0.02 -2.47 16 16 C -0.01 -0.35 3.52 29.85 0.10 -0.24 16 17 C -0.51 -27.79 8.94 25.60 0.23 -27.56 16 18 H 0.04 2.61 7.30 -2.91 -0.02 2.58 16 19 C 0.00 0.27 5.47 84.65 0.46 0.74 16 20 N -0.95 -58.08 13.96 21.44 0.30 -57.78 16 21 Si 0.94 43.65 27.47 68.60 1.88 45.53 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 25 C -0.12 -3.59 5.36 30.67 0.16 -3.42 16 26 C 0.12 3.07 6.42 86.37 0.55 3.62 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.17 6.32 -2.39 -0.02 1.15 16 30 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.16 1.66 6.29 -2.91 -0.02 1.64 16 33 H 0.14 2.77 5.85 -2.91 -0.02 2.75 16 34 H 0.16 2.33 3.93 -2.91 -0.01 2.32 16 35 H 0.11 1.90 5.30 -2.39 -0.01 1.89 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 2.48 6.91 -2.39 -0.02 2.46 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 41 H 0.01 0.47 7.57 -2.38 -0.02 0.45 16 42 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 2.31 7.03 -2.39 -0.02 2.29 16 Total: -1.00 -71.41 366.12 4.24 -67.17 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.93 Total: 14.30 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 5.53 Total: -19.43 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -4.03 Total: -87.78 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.07 Total: -19.79 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -71.41 4.24 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493771067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.374 kcal (2) G-P(sol) polarization free energy of solvation -71.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds