Wall clock time and date at job start Tue Mar 31 2020 11:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99875 * 2 1 4 4 C 1.38760 * 120.05313 * 0.25592 * 3 2 1 5 5 C 1.38122 * 119.93730 * 180.27132 * 4 3 2 6 6 C 1.38291 * 120.06100 * 359.73034 * 5 4 3 7 7 C 1.38239 * 120.10957 * 0.02562 * 6 5 4 8 8 C 1.38170 * 120.05728 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.03075 * 180.02562 * 8 7 6 10 10 C 1.52998 * 115.56534 * 99.75222 * 9 8 7 11 11 C 1.53001 * 117.49395 * 314.06442 * 9 8 7 12 12 C 1.52996 * 60.00216 * 252.51102 * 11 9 8 13 13 H 1.09001 * 117.50415 * 252.48905 * 12 11 9 14 14 N 1.46904 * 117.49908 * 107.48709 * 12 11 9 15 15 C 1.46900 * 110.99818 * 131.79454 * 14 12 11 16 16 C 1.53001 * 109.47113 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.47417 * 305.00188 * 16 15 14 18 18 C 1.47204 * 109.46755 * 64.99951 * 16 15 14 19 19 N 6.16864 * 107.70909 * 275.32123 * 2 1 3 20 20 C 1.52997 * 109.47054 * 184.99775 * 16 15 14 21 21 C 1.50705 * 109.47024 * 175.00228 * 20 16 15 22 22 H 1.08001 * 119.99584 * 359.97438 * 21 20 16 23 23 C 1.37878 * 120.00155 * 180.02562 * 21 20 16 24 24 N 1.31509 * 119.99633 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00019 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47062 * 59.99944 * 25 23 21 27 27 H 1.48496 * 109.47205 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47499 * 300.00062 * 25 23 21 29 29 H 1.09002 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47288 * 299.99275 * 1 2 3 31 31 H 1.09001 * 109.47859 * 59.99853 * 1 2 3 32 32 H 1.07995 * 120.03172 * 0.02562 * 4 3 2 33 33 H 1.08009 * 119.96943 * 179.74825 * 5 4 3 34 34 H 1.08001 * 119.94291 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.97640 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47005 * 210.64328 * 10 9 8 37 37 H 1.08994 * 109.46906 * 330.64264 * 10 9 8 38 38 H 1.09005 * 109.46887 * 90.64176 * 10 9 8 39 39 H 1.09003 * 117.49877 * 145.02514 * 11 9 8 40 40 H 1.09001 * 117.52261 * 359.97438 * 11 9 8 41 41 H 1.00902 * 110.99708 * 7.84613 * 14 12 11 42 42 H 1.08998 * 109.46992 * 300.00188 * 15 14 12 43 43 H 1.09002 * 109.47277 * 60.00420 * 15 14 12 44 44 H 1.08997 * 109.47333 * 295.00095 * 20 16 15 45 45 H 1.08997 * 109.47125 * 55.00354 * 20 16 15 46 46 H 0.97008 * 119.99834 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0054 5 6 1.9207 3.6047 -0.0003 6 6 3.3018 3.6758 -0.0057 7 6 4.0559 2.5172 -0.0060 8 6 3.4310 1.2849 -0.0003 9 6 4.2536 0.0222 0.0000 10 6 4.4233 -0.6549 1.3615 11 6 5.4264 -0.0570 -0.9794 12 6 4.1621 -0.8808 -1.2317 13 1 4.2227 -1.9574 -1.0725 14 7 3.2789 -0.4507 -2.3240 15 6 2.9141 -1.5847 -3.1836 16 6 1.9965 -1.0984 -4.3072 17 1 1.1367 -0.5846 -3.8775 18 6 2.7369 -0.1714 -5.1787 19 7 3.3054 0.5450 -5.8510 20 6 1.5166 -2.2968 -5.1283 21 6 0.5177 -1.8332 -6.1571 22 1 0.2516 -0.7883 -6.2188 23 6 -0.0572 -2.7431 -7.0189 24 7 0.2666 -4.0154 -6.9434 25 14 -1.2958 -2.1685 -8.2936 26 1 -0.6553 -1.1765 -9.1942 27 1 -1.7616 -3.3316 -9.0906 28 1 -2.4548 -1.5403 -7.6098 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 0.2127 2.3204 0.0100 33 1 1.3338 4.5114 -0.0003 34 1 3.7920 4.6382 -0.0106 35 1 5.1343 2.5753 -0.0098 36 1 5.3845 -1.1677 1.3949 37 1 4.3854 0.0978 2.1488 38 1 3.6207 -1.3773 1.5105 39 1 6.3188 -0.5916 -0.6539 40 1 5.6030 0.8038 -1.6244 41 1 3.7039 0.2892 -2.8625 42 1 3.8163 -2.0192 -3.6141 43 1 2.3952 -2.3379 -2.5907 44 1 2.3674 -2.7578 -5.6299 45 1 1.0462 -3.0250 -4.4675 46 1 -0.1382 -4.6557 -7.5494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565519097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:30 Heat of formation + Delta-G solvation = 30.038298 kcal Electronic energy + Delta-G solvation = -26163.655537 eV Core-core repulsion = 22633.068516 eV Total energy + Delta-G solvation = -3530.587021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.37217 -38.38768 -37.18665 -36.61245 -34.33379 -33.13995 -31.25444 -30.37321 -29.95268 -28.16887 -27.10635 -26.13979 -23.21726 -22.83716 -22.16333 -21.83569 -21.09834 -19.47648 -17.74432 -16.68627 -16.52167 -16.06765 -15.82329 -15.55839 -15.29752 -14.88633 -14.57269 -14.34086 -13.84472 -13.57752 -13.40609 -13.11417 -12.93702 -12.88243 -12.60514 -12.45683 -12.28030 -12.09944 -11.89690 -11.71961 -11.70807 -11.50529 -11.24654 -11.02121 -10.95591 -10.84462 -10.71421 -10.58465 -10.50653 -10.20862 -9.85673 -9.48663 -9.21220 -8.83813 -8.44955 -8.03868 -7.89081 -6.09255 -4.12300 1.36864 1.56700 3.30700 3.35084 3.38729 3.48930 3.59626 3.64190 3.74670 3.82676 4.19766 4.41883 4.65154 4.79023 4.83532 4.94719 5.01319 5.11250 5.12867 5.18443 5.28710 5.30672 5.36140 5.47261 5.60004 5.62003 5.65597 5.71983 5.73212 5.77908 5.78649 5.86062 5.91114 6.07625 6.20025 6.21803 6.41999 6.45352 6.47515 6.56509 6.58888 6.85964 7.25101 7.44258 7.51219 7.55156 7.59732 7.85680 8.23855 8.42580 8.91950 9.52954 11.01593 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.003483 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.928745 B = 8036.401355 C = 8392.231497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.288 6.288 3 C 0.168 3.832 4 C -0.217 4.217 5 C -0.084 4.084 6 C -0.167 4.167 7 C -0.079 4.079 8 C -0.070 4.070 9 C -0.071 4.071 10 C -0.106 4.106 11 C -0.204 4.204 12 C 0.056 3.944 13 H 0.113 0.887 14 N -0.649 5.649 15 C 0.072 3.928 16 C 0.008 3.992 17 H 0.108 0.892 18 C 0.241 3.759 19 N -0.477 5.477 20 C 0.034 3.966 21 C -0.526 4.526 22 H 0.055 0.945 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.337 0.663 42 H 0.034 0.966 43 H 0.092 0.908 44 H 0.024 0.976 45 H 0.040 0.960 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 8.358 20.097 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.200 6.200 3 C 0.121 3.879 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.186 4.186 7 C -0.098 4.098 8 C -0.071 4.071 9 C -0.073 4.073 10 C -0.163 4.163 11 C -0.243 4.243 12 C -0.055 4.055 13 H 0.131 0.869 14 N -0.277 5.277 15 C -0.058 4.058 16 C -0.014 4.014 17 H 0.126 0.874 18 C -0.076 4.076 19 N -0.154 5.154 20 C -0.005 4.005 21 C -0.564 4.564 22 H 0.073 0.927 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.718 3.282 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.200 1.200 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.156 0.844 42 H 0.053 0.947 43 H 0.110 0.890 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.588 9.006 19.349 22.061 hybrid contribution -0.436 0.154 -1.165 1.254 sum 5.152 9.160 18.183 21.002 Atomic orbital electron populations 1.23027 0.79165 1.03896 1.00728 1.86194 1.20322 1.25949 1.87505 1.18682 0.91376 0.84296 0.93511 1.21223 0.99974 0.92505 1.09843 1.20859 0.94606 0.96879 0.97914 1.20911 0.93934 0.98043 1.05686 1.20774 0.99566 0.91121 0.98295 1.18173 0.89957 0.93229 1.05714 1.20173 0.99094 0.95697 0.92320 1.21264 1.01401 0.99843 0.93832 1.23804 0.93097 1.03593 1.03770 1.22465 0.93158 0.96018 0.93847 0.86897 1.60186 1.43904 1.10807 1.12834 1.22090 0.97926 0.92836 0.92945 1.19313 0.95454 0.95196 0.91421 0.87431 1.29303 0.92510 0.92676 0.93067 1.80988 1.11581 1.12210 1.10630 1.19146 0.96671 0.90298 0.94382 1.21105 1.24319 0.94204 1.16813 0.92651 1.24937 0.96764 0.94842 0.97333 1.69928 1.43358 1.01530 1.38205 0.86670 0.81665 0.78199 0.81632 1.20283 1.21177 1.20046 0.88321 0.93630 0.92525 0.85742 0.86412 0.86494 0.86048 0.92533 0.92501 0.91762 0.88681 0.88919 0.84358 0.94738 0.88976 0.95780 0.94230 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.29 -3.65 9.39 -19.43 -0.18 -3.83 16 3 C 0.17 2.14 6.22 -39.21 -0.24 1.90 16 4 C -0.22 -2.54 9.04 -39.43 -0.36 -2.90 16 5 C -0.08 -0.92 10.04 -39.60 -0.40 -1.32 16 6 C -0.17 -1.81 10.04 -39.56 -0.40 -2.21 16 7 C -0.08 -0.90 9.32 -39.61 -0.37 -1.27 16 8 C -0.07 -0.86 4.52 -104.47 -0.47 -1.33 16 9 C -0.07 -0.80 1.78 -155.66 -0.28 -1.07 16 10 C -0.11 -1.02 9.88 37.16 0.37 -0.65 16 11 C -0.20 -2.17 9.18 -26.73 -0.25 -2.41 16 12 C 0.06 0.68 5.71 -67.71 -0.39 0.29 16 13 H 0.11 1.29 7.92 -51.93 -0.41 0.87 16 14 N -0.65 -9.02 5.50 -106.72 -0.59 -9.60 16 15 C 0.07 1.08 4.98 -3.82 -0.02 1.06 16 16 C 0.01 0.15 2.42 -93.41 -0.23 -0.07 16 17 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 18 C 0.24 4.98 12.97 -20.79 -0.27 4.71 16 19 N -0.48 -10.62 18.53 42.12 0.78 -9.84 16 20 C 0.03 0.78 4.42 -27.88 -0.12 0.66 16 21 C -0.53 -14.04 8.60 -34.44 -0.30 -14.33 16 22 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 25 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 31 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 32 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.19 7.93 -52.49 -0.42 0.77 16 36 H 0.06 0.47 7.88 -51.93 -0.41 0.06 16 37 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.87 8.03 -51.93 -0.42 0.46 16 40 H 0.09 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.34 5.07 7.56 -39.29 -0.30 4.77 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -30.37 387.87 -8.49 -38.86 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.24 Total: 3.07 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.82 Total: -16.05 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.93 Total: -44.21 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.18 Total: -3.83 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.37 -8.49 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565519097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.896 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds