Wall clock time and date at job start Tue Mar 31 2020 11:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99875 * 2 1 4 4 C 1.38760 * 120.05313 * 0.25592 * 3 2 1 5 5 C 1.38122 * 119.93730 * 180.27132 * 4 3 2 6 6 C 1.38291 * 120.06100 * 359.73034 * 5 4 3 7 7 C 1.38239 * 120.10957 * 0.02562 * 6 5 4 8 8 C 1.38170 * 120.05728 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.03075 * 180.02562 * 8 7 6 10 10 C 1.52998 * 115.56534 * 99.75222 * 9 8 7 11 11 C 1.53001 * 117.49395 * 314.06442 * 9 8 7 12 12 C 1.52996 * 60.00216 * 252.51102 * 11 9 8 13 13 H 1.09001 * 117.50415 * 252.48905 * 12 11 9 14 14 N 1.46904 * 117.49908 * 107.48709 * 12 11 9 15 15 C 1.46900 * 110.99818 * 131.79454 * 14 12 11 16 16 C 1.53001 * 109.47113 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.47417 * 305.00188 * 16 15 14 18 18 C 1.47204 * 109.46755 * 64.99951 * 16 15 14 19 19 N 6.16864 * 107.70909 * 275.32123 * 2 1 3 20 20 C 1.52997 * 109.47054 * 184.99775 * 16 15 14 21 21 C 1.50705 * 109.47024 * 175.00228 * 20 16 15 22 22 H 1.08001 * 119.99584 * 359.97438 * 21 20 16 23 23 C 1.37878 * 120.00155 * 180.02562 * 21 20 16 24 24 N 1.31509 * 119.99633 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00019 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47062 * 59.99944 * 25 23 21 27 27 H 1.48496 * 109.47205 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47499 * 300.00062 * 25 23 21 29 29 H 1.09002 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47288 * 299.99275 * 1 2 3 31 31 H 1.09001 * 109.47859 * 59.99853 * 1 2 3 32 32 H 1.07995 * 120.03172 * 0.02562 * 4 3 2 33 33 H 1.08009 * 119.96943 * 179.74825 * 5 4 3 34 34 H 1.08001 * 119.94291 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.97640 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47005 * 210.64328 * 10 9 8 37 37 H 1.08994 * 109.46906 * 330.64264 * 10 9 8 38 38 H 1.09005 * 109.46887 * 90.64176 * 10 9 8 39 39 H 1.09003 * 117.49877 * 145.02514 * 11 9 8 40 40 H 1.09001 * 117.52261 * 359.97438 * 11 9 8 41 41 H 1.00902 * 110.99708 * 7.84613 * 14 12 11 42 42 H 1.08998 * 109.46992 * 300.00188 * 15 14 12 43 43 H 1.09002 * 109.47277 * 60.00420 * 15 14 12 44 44 H 1.08997 * 109.47333 * 295.00095 * 20 16 15 45 45 H 1.08997 * 109.47125 * 55.00354 * 20 16 15 46 46 H 0.97008 * 119.99834 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0054 5 6 1.9207 3.6047 -0.0003 6 6 3.3018 3.6758 -0.0057 7 6 4.0559 2.5172 -0.0060 8 6 3.4310 1.2849 -0.0003 9 6 4.2536 0.0222 0.0000 10 6 4.4233 -0.6549 1.3615 11 6 5.4264 -0.0570 -0.9794 12 6 4.1621 -0.8808 -1.2317 13 1 4.2227 -1.9574 -1.0725 14 7 3.2789 -0.4507 -2.3240 15 6 2.9141 -1.5847 -3.1836 16 6 1.9965 -1.0984 -4.3072 17 1 1.1367 -0.5846 -3.8775 18 6 2.7369 -0.1714 -5.1787 19 7 3.3054 0.5450 -5.8510 20 6 1.5166 -2.2968 -5.1283 21 6 0.5177 -1.8332 -6.1571 22 1 0.2516 -0.7883 -6.2188 23 6 -0.0572 -2.7431 -7.0189 24 7 0.2666 -4.0154 -6.9434 25 14 -1.2958 -2.1685 -8.2936 26 1 -0.6553 -1.1765 -9.1942 27 1 -1.7616 -3.3316 -9.0906 28 1 -2.4548 -1.5403 -7.6098 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 0.2127 2.3204 0.0100 33 1 1.3338 4.5114 -0.0003 34 1 3.7920 4.6382 -0.0106 35 1 5.1343 2.5753 -0.0098 36 1 5.3845 -1.1677 1.3949 37 1 4.3854 0.0978 2.1488 38 1 3.6207 -1.3773 1.5105 39 1 6.3188 -0.5916 -0.6539 40 1 5.6030 0.8038 -1.6244 41 1 3.7039 0.2892 -2.8625 42 1 3.8163 -2.0192 -3.6141 43 1 2.3952 -2.3379 -2.5907 44 1 2.3674 -2.7578 -5.6299 45 1 1.0462 -3.0250 -4.4675 46 1 -0.1382 -4.6557 -7.5494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565519097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:28 Heat of formation + Delta-G solvation = 14.356111 kcal Electronic energy + Delta-G solvation = -26164.335568 eV Core-core repulsion = 22633.068516 eV Total energy + Delta-G solvation = -3531.267052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.22722 -39.38906 -38.42367 -37.72339 -35.91329 -34.89661 -32.74462 -31.34329 -30.79869 -29.16590 -27.92915 -27.76345 -24.43991 -23.98330 -23.54964 -22.99793 -22.06490 -20.33051 -18.62448 -18.51286 -18.22191 -17.00881 -16.76049 -16.65668 -16.43429 -16.27560 -15.77403 -15.18526 -15.04937 -14.66538 -14.58752 -14.43127 -14.36842 -13.93301 -13.92642 -13.65110 -13.49971 -13.37561 -13.08740 -13.05035 -12.79579 -12.62367 -12.50660 -12.47404 -12.36638 -12.28818 -12.08845 -11.77249 -11.63092 -11.44541 -11.35741 -11.21465 -10.57303 -10.54908 -9.69948 -9.01913 -8.80819 -8.19383 -6.27653 0.51805 0.71044 1.40382 1.41991 1.49096 1.92922 1.95568 2.41125 2.67325 2.82886 2.97566 3.15536 3.17729 3.24991 3.81750 3.92560 4.12332 4.15547 4.20218 4.26056 4.33416 4.42451 4.45714 4.55345 4.59089 4.61647 4.67793 4.82678 4.88438 4.92104 4.92727 4.97695 5.01340 5.02931 5.07829 5.12430 5.28549 5.43676 5.46720 5.60713 5.62797 5.64726 5.74417 5.79036 6.03910 6.13538 6.24754 6.35855 6.73915 6.74843 6.86529 7.40717 8.91335 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.003483 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.928745 B = 8036.401355 C = 8392.231497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.150 3.850 4 C -0.229 4.229 5 C -0.093 4.093 6 C -0.174 4.174 7 C -0.088 4.088 8 C -0.085 4.085 9 C -0.067 4.067 10 C -0.102 4.102 11 C -0.192 4.192 12 C 0.041 3.959 13 H 0.120 0.880 14 N -0.648 5.648 15 C 0.085 3.915 16 C 0.022 3.978 17 H 0.116 0.884 18 C 0.251 3.749 19 N -0.505 5.505 20 C 0.041 3.959 21 C -0.540 4.540 22 H 0.051 0.949 23 C 0.014 3.986 24 N -0.922 5.922 25 Si 0.947 3.053 26 H -0.282 1.282 27 H -0.281 1.281 28 H -0.263 1.263 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.329 0.671 42 H 0.033 0.967 43 H 0.103 0.897 44 H 0.000 1.000 45 H 0.037 0.963 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 9.080 21.119 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.104 3.896 4 C -0.247 4.247 5 C -0.111 4.111 6 C -0.192 4.192 7 C -0.106 4.106 8 C -0.086 4.086 9 C -0.069 4.069 10 C -0.160 4.160 11 C -0.231 4.231 12 C -0.070 4.070 13 H 0.138 0.862 14 N -0.276 5.276 15 C -0.045 4.045 16 C 0.000 4.000 17 H 0.134 0.866 18 C -0.065 4.065 19 N -0.182 5.182 20 C 0.002 3.998 21 C -0.578 4.578 22 H 0.070 0.930 23 C -0.185 4.185 24 N -0.562 5.562 25 Si 0.772 3.228 26 H -0.208 1.208 27 H -0.206 1.206 28 H -0.188 1.188 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.148 0.852 42 H 0.051 0.949 43 H 0.122 0.878 44 H 0.019 0.981 45 H 0.055 0.945 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.610 9.735 20.391 23.281 hybrid contribution -0.438 -0.038 -1.455 1.520 sum 5.172 9.697 18.936 21.894 Atomic orbital electron populations 1.23158 0.78164 1.04692 1.01174 1.86156 1.21489 1.26218 1.87696 1.18902 0.91842 0.84611 0.94270 1.21457 1.00673 0.92677 1.09933 1.21170 0.95049 0.97415 0.97438 1.21217 0.94110 0.98827 1.05009 1.21005 1.00349 0.91099 0.98146 1.18407 0.90134 0.93980 1.06071 1.20225 0.98884 0.95109 0.92645 1.21251 1.02068 0.99700 0.92931 1.23818 0.93270 1.02929 1.03096 1.22556 0.94038 0.96683 0.93719 0.86204 1.60165 1.44840 1.09947 1.12616 1.21906 0.97182 0.93306 0.92071 1.19191 0.96331 0.93033 0.91412 0.86628 1.29655 0.91922 0.92329 0.92607 1.80983 1.12712 1.13174 1.11371 1.18960 0.95046 0.91742 0.94033 1.21499 1.24751 0.94029 1.17513 0.93032 1.25677 0.98570 0.95010 0.99256 1.70022 1.44552 1.02431 1.39189 0.85780 0.79895 0.77738 0.79354 1.20783 1.20611 1.18758 0.87385 0.92112 0.93125 0.84754 0.84482 0.84598 0.84849 0.90965 0.92449 0.92259 0.86860 0.89599 0.85243 0.94859 0.87849 0.98142 0.94510 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.30 -7.44 9.39 -92.44 -0.87 -8.31 16 3 C 0.15 3.70 6.22 22.51 0.14 3.84 16 4 C -0.23 -5.15 9.04 22.37 0.20 -4.95 16 5 C -0.09 -1.90 10.04 22.25 0.22 -1.68 16 6 C -0.17 -3.49 10.04 22.28 0.22 -3.26 16 7 C -0.09 -1.88 9.32 22.25 0.21 -1.67 16 8 C -0.09 -1.99 4.52 -19.77 -0.09 -2.08 16 9 C -0.07 -1.40 1.78 -52.93 -0.09 -1.49 16 10 C -0.10 -1.79 9.88 71.98 0.71 -1.08 16 11 C -0.19 -3.75 9.18 30.59 0.28 -3.47 16 12 C 0.04 0.92 5.71 44.91 0.26 1.18 16 13 H 0.12 2.53 7.92 -2.39 -0.02 2.51 16 14 N -0.65 -17.40 5.50 -491.56 -2.70 -20.10 16 15 C 0.09 2.50 4.98 86.30 0.43 2.93 16 16 C 0.02 0.81 2.42 -12.60 -0.03 0.78 16 17 H 0.12 4.11 8.14 -2.39 -0.02 4.10 16 18 C 0.25 10.30 12.97 89.45 1.16 11.46 16 19 N -0.50 -22.39 18.53 20.00 0.37 -22.01 16 20 C 0.04 1.91 4.42 29.85 0.13 2.04 16 21 C -0.54 -28.77 8.60 25.60 0.22 -28.55 16 22 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 23 C 0.01 0.77 5.46 84.66 0.46 1.23 16 24 N -0.92 -52.93 13.29 21.45 0.28 -52.65 16 25 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 0.94 7.65 -2.39 -0.02 0.92 16 31 H 0.05 1.00 7.67 -2.39 -0.02 0.98 16 32 H 0.13 2.60 6.30 -2.91 -0.02 2.58 16 33 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.13 2.40 7.93 -2.91 -0.02 2.38 16 36 H 0.07 1.02 7.88 -2.39 -0.02 1.00 16 37 H 0.06 0.99 8.03 -2.39 -0.02 0.97 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.11 1.79 8.03 -2.39 -0.02 1.77 16 40 H 0.09 1.81 7.93 -2.39 -0.02 1.80 16 41 H 0.33 9.67 7.56 -89.69 -0.68 9.00 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -63.84 387.87 4.96 -58.89 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.29 Total: 21.90 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 5.55 Total: -23.22 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -2.05 Total: -94.76 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.87 Total: -8.31 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -63.84 4.96 -58.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565519097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.246 kcal (2) G-P(sol) polarization free energy of solvation -63.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds