Wall clock time and date at job start Tue Mar 31 2020 11:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38010 * 119.89557 * 264.72764 * 3 2 1 5 5 C 1.38250 * 119.95668 * 179.66971 * 4 3 2 6 6 C 1.38147 * 119.98547 * 0.60326 * 5 4 3 7 7 C 1.38460 * 120.31221 * 359.77531 * 6 5 4 8 8 C 1.38412 * 119.83636 * 359.84689 * 7 6 5 9 9 O 1.35844 * 121.80455 * 180.34864 * 8 7 6 10 10 C 1.42826 * 117.85786 * 342.80826 * 9 8 7 11 11 C 1.53403 * 108.38054 * 49.17610 * 10 9 8 12 12 C 1.50770 * 118.76590 * 179.73803 * 7 6 5 13 13 H 1.09005 * 109.40388 * 282.33752 * 12 7 6 14 14 N 1.46900 * 109.43555 * 42.22928 * 12 7 6 15 15 C 1.46904 * 111.00127 * 205.20910 * 14 12 7 16 16 C 1.52999 * 109.47299 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47225 * 304.99956 * 16 15 14 18 18 C 1.47200 * 109.46933 * 65.00427 * 16 15 14 19 19 N 8.90988 * 79.35686 * 24.02769 * 2 1 3 20 20 C 1.53006 * 109.46890 * 185.00240 * 16 15 14 21 21 C 1.50695 * 109.46757 * 175.00057 * 20 16 15 22 22 H 1.08007 * 120.00514 * 0.02562 * 21 20 16 23 23 C 1.37876 * 119.99903 * 179.97438 * 21 20 16 24 24 N 1.31517 * 120.00169 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00136 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47150 * 89.99548 * 25 23 21 27 27 H 1.48498 * 109.47197 * 209.99974 * 25 23 21 28 28 H 1.48496 * 109.46613 * 329.99606 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 34 34 H 1.08003 * 120.01785 * 359.91558 * 4 3 2 35 35 H 1.07999 * 120.00258 * 180.34671 * 5 4 3 36 36 H 1.07999 * 119.84232 * 179.75119 * 6 5 4 37 37 H 1.08998 * 109.68001 * 168.89338 * 10 9 8 38 38 H 1.08994 * 109.68216 * 289.41497 * 10 9 8 39 39 H 1.09002 * 109.70431 * 54.96555 * 11 10 9 40 40 H 1.08994 * 109.70053 * 175.56768 * 11 10 9 41 41 H 1.00904 * 111.00274 * 329.16330 * 14 12 7 42 42 H 1.09003 * 109.47041 * 300.00956 * 15 14 12 43 43 H 1.09006 * 109.46562 * 60.00043 * 15 14 12 44 44 H 1.08997 * 109.47257 * 294.99815 * 20 16 15 45 45 H 1.08998 * 109.47181 * 55.00352 * 20 16 15 46 46 H 0.96996 * 120.00262 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3654 2.0326 -1.1914 5 6 2.8199 3.3383 -1.1935 6 6 2.9523 4.0252 -0.0023 7 6 2.6272 3.4138 1.1968 8 6 2.1644 2.1094 1.2015 9 8 1.8274 1.4734 2.3535 10 6 2.3011 2.0244 3.5832 11 6 1.9856 3.5256 3.5940 12 6 2.7907 4.1939 2.4766 13 1 3.8446 4.2184 2.7537 14 7 2.3055 5.5662 2.2781 15 6 2.9534 6.4943 3.2144 16 6 2.4233 7.9100 2.9781 17 1 2.5633 8.1804 1.9315 18 6 0.9901 7.9590 3.3103 19 7 -0.1156 7.9978 3.5655 20 6 3.1867 8.8951 3.8658 21 6 2.7510 10.3016 3.5451 22 1 2.0041 10.4756 2.7846 23 6 3.3052 11.3665 4.2234 24 7 2.9247 12.5940 3.9439 25 14 4.5965 11.0657 5.5393 26 1 5.9463 11.0779 4.9203 27 1 4.5137 12.1340 6.5674 28 1 4.3559 9.7460 6.1763 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.2671 1.4931 -2.1218 35 1 3.0754 3.8196 -2.1259 36 1 3.3114 5.0437 -0.0063 37 1 1.8004 1.5380 4.4203 38 1 3.3778 1.8743 3.6620 39 1 0.9203 3.6785 3.4211 40 1 2.2674 3.9533 4.5561 41 1 2.4407 5.8629 1.3232 42 1 2.7335 6.1904 4.2379 43 1 4.0315 6.4781 3.0544 44 1 2.9756 8.6793 4.9132 45 1 4.2565 8.7954 3.6827 46 1 3.3148 13.3431 4.4208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584345975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:42 Heat of formation + Delta-G solvation = -2.796769 kcal Electronic energy + Delta-G solvation = -25639.547536 eV Core-core repulsion = 22107.536679 eV Total energy + Delta-G solvation = -3532.010856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08020 -37.84641 -37.72816 -36.02254 -34.24513 -33.53028 -32.34221 -31.09887 -30.43444 -29.30291 -27.11283 -24.91663 -24.08585 -23.82849 -22.45929 -21.50288 -20.98183 -19.90017 -18.18833 -17.13975 -16.90515 -16.81827 -16.19934 -15.28255 -15.19196 -14.80608 -14.60091 -14.44109 -14.17731 -14.07504 -13.64100 -13.54316 -13.44187 -13.01653 -12.72903 -12.68219 -12.45872 -12.31197 -12.13592 -11.99139 -11.74814 -11.54611 -11.34037 -11.27935 -11.23119 -11.01407 -10.91480 -10.77146 -10.60398 -10.44732 -9.96927 -9.78317 -9.35942 -9.00961 -8.64670 -8.46599 -8.19948 -6.13275 -4.14209 1.09858 1.24982 3.10081 3.22916 3.32149 3.32619 3.49650 3.67982 3.76544 4.07402 4.30101 4.35385 4.48182 4.56133 4.72672 4.74140 4.84181 4.93935 4.98846 5.06195 5.14138 5.20755 5.21330 5.23792 5.32260 5.33176 5.45100 5.47198 5.56152 5.67644 5.71293 5.74686 5.82384 5.88270 5.98984 6.07878 6.15946 6.21775 6.24014 6.27732 6.36648 6.60822 6.87295 6.92763 7.08238 7.26163 7.31189 7.60486 8.37752 8.52622 8.90366 9.46308 10.99836 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.002762 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.131465 B =10133.590948 C =10360.967283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.114 4.114 4 C -0.088 4.088 5 C -0.147 4.147 6 C -0.087 4.087 7 C -0.154 4.154 8 C 0.143 3.857 9 O -0.312 6.312 10 C 0.062 3.938 11 C -0.150 4.150 12 C 0.134 3.866 13 H 0.059 0.941 14 N -0.683 5.683 15 C 0.062 3.938 16 C 0.020 3.980 17 H 0.104 0.896 18 C 0.251 3.749 19 N -0.469 5.469 20 C -0.004 4.004 21 C -0.529 4.529 22 H 0.074 0.926 23 C 0.071 3.929 24 N -0.896 5.896 25 Si 0.878 3.122 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.264 1.264 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.346 0.654 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.025 0.975 45 H 0.032 0.968 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.715 -26.378 -7.284 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.114 4.114 4 C -0.106 4.106 5 C -0.165 4.165 6 C -0.105 4.105 7 C -0.155 4.155 8 C 0.097 3.903 9 O -0.226 6.226 10 C -0.013 4.013 11 C -0.189 4.189 12 C 0.024 3.976 13 H 0.077 0.923 14 N -0.317 5.317 15 C -0.068 4.068 16 C -0.002 4.002 17 H 0.122 0.878 18 C -0.066 4.066 19 N -0.145 5.145 20 C -0.043 4.043 21 C -0.566 4.566 22 H 0.092 0.908 23 C -0.131 4.131 24 N -0.534 5.534 25 Si 0.704 3.296 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.189 1.189 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.167 0.833 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.050 0.950 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.396 -26.363 -6.424 27.171 hybrid contribution 2.110 0.572 0.306 2.208 sum 3.507 -25.791 -6.118 26.738 Atomic orbital electron populations 1.21715 0.94817 1.01407 1.02266 1.20336 0.96175 0.92062 1.02493 1.19403 1.04301 0.96969 0.90772 1.20840 0.98156 0.94953 0.96689 1.20977 1.02555 0.94969 0.97974 1.20838 0.98583 0.99569 0.91528 1.19836 1.05894 0.93812 0.95932 1.18431 0.95775 0.90118 0.85971 1.85979 1.71614 1.52219 1.12787 1.23007 0.99575 0.94122 0.84641 1.22272 1.02758 0.94321 0.99500 1.20226 0.97064 0.88646 0.91662 0.92331 1.60601 1.61223 1.00347 1.09502 1.22200 0.96360 0.90809 0.97450 1.18939 0.83370 0.94777 1.03101 0.87798 1.28641 0.94436 0.91090 0.92444 1.80981 1.13261 1.10450 1.09809 1.19632 0.95299 0.94493 0.94908 1.21022 1.24608 0.88433 1.22570 0.90763 1.24996 0.96492 0.94999 0.96634 1.69903 1.43139 0.98467 1.41925 0.86817 0.82173 0.78449 0.82111 1.20060 1.21282 1.18875 0.92853 0.92256 0.92670 0.90808 0.91442 0.85627 0.85761 0.85768 0.87376 0.91950 0.89376 0.89805 0.83253 0.90347 0.93099 0.95635 0.94961 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.89 37.16 0.37 -0.85 16 2 C -0.07 -0.63 5.74 -27.89 -0.16 -0.79 16 3 C -0.11 -1.17 5.15 -104.38 -0.54 -1.71 16 4 C -0.09 -0.82 9.67 -39.66 -0.38 -1.20 16 5 C -0.15 -1.38 10.04 -39.61 -0.40 -1.78 16 6 C -0.09 -0.89 8.92 -39.53 -0.35 -1.25 16 7 C -0.15 -1.73 5.56 -104.44 -0.58 -2.31 16 8 C 0.14 1.64 6.46 -39.19 -0.25 1.39 16 9 O -0.31 -3.44 9.29 -19.25 -0.18 -3.62 16 10 C 0.06 0.54 7.03 37.37 0.26 0.81 16 11 C -0.15 -1.56 5.61 -26.48 -0.15 -1.71 16 12 C 0.13 1.46 2.65 -68.79 -0.18 1.27 16 13 H 0.06 0.60 7.80 -51.93 -0.40 0.19 16 14 N -0.68 -8.47 6.00 -107.87 -0.65 -9.12 16 15 C 0.06 0.81 4.84 -3.82 -0.02 0.80 16 16 C 0.02 0.35 2.35 -93.40 -0.22 0.13 16 17 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 18 C 0.25 5.16 13.67 -20.78 -0.28 4.87 16 19 N -0.47 -10.67 18.53 42.13 0.78 -9.89 16 20 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 21 C -0.53 -14.10 9.15 -34.44 -0.32 -14.41 16 22 H 0.07 2.18 7.84 -52.48 -0.41 1.77 16 23 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 24 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 25 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.65 7.62 -51.93 -0.40 0.25 16 33 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 34 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.12 6.62 -52.49 -0.35 0.77 16 37 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.80 7.81 -51.93 -0.41 0.39 16 41 H 0.35 4.00 6.19 -39.29 -0.24 3.76 16 42 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 43 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 44 H 0.03 0.55 7.20 -51.93 -0.37 0.17 16 45 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -32.24 375.58 -8.86 -41.11 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.18 Total: 1.31 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -3.40 Total: -15.04 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.91 Total: -45.16 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.18 Total: -3.62 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.24 -8.86 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584345975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.308 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds