Wall clock time and date at job start Tue Mar 31 2020 11:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38010 * 119.89557 * 264.72764 * 3 2 1 5 5 C 1.38250 * 119.95668 * 179.66971 * 4 3 2 6 6 C 1.38147 * 119.98547 * 0.60326 * 5 4 3 7 7 C 1.38460 * 120.31221 * 359.77531 * 6 5 4 8 8 C 1.38412 * 119.83636 * 359.84689 * 7 6 5 9 9 O 1.35844 * 121.80455 * 180.34864 * 8 7 6 10 10 C 1.42826 * 117.85786 * 342.80826 * 9 8 7 11 11 C 1.53403 * 108.38054 * 49.17610 * 10 9 8 12 12 C 1.50770 * 118.76590 * 179.73803 * 7 6 5 13 13 H 1.09005 * 109.40388 * 282.33752 * 12 7 6 14 14 N 1.46900 * 109.43555 * 42.22928 * 12 7 6 15 15 C 1.46904 * 111.00127 * 205.20910 * 14 12 7 16 16 C 1.52999 * 109.47299 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47225 * 304.99956 * 16 15 14 18 18 C 1.47200 * 109.46933 * 65.00427 * 16 15 14 19 19 N 8.90988 * 79.35686 * 24.02769 * 2 1 3 20 20 C 1.53006 * 109.46890 * 185.00240 * 16 15 14 21 21 C 1.50695 * 109.46757 * 175.00057 * 20 16 15 22 22 H 1.08007 * 120.00514 * 0.02562 * 21 20 16 23 23 C 1.37876 * 119.99903 * 179.97438 * 21 20 16 24 24 N 1.31517 * 120.00169 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00136 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47150 * 89.99548 * 25 23 21 27 27 H 1.48498 * 109.47197 * 209.99974 * 25 23 21 28 28 H 1.48496 * 109.46613 * 329.99606 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 34 34 H 1.08003 * 120.01785 * 359.91558 * 4 3 2 35 35 H 1.07999 * 120.00258 * 180.34671 * 5 4 3 36 36 H 1.07999 * 119.84232 * 179.75119 * 6 5 4 37 37 H 1.08998 * 109.68001 * 168.89338 * 10 9 8 38 38 H 1.08994 * 109.68216 * 289.41497 * 10 9 8 39 39 H 1.09002 * 109.70431 * 54.96555 * 11 10 9 40 40 H 1.08994 * 109.70053 * 175.56768 * 11 10 9 41 41 H 1.00904 * 111.00274 * 329.16330 * 14 12 7 42 42 H 1.09003 * 109.47041 * 300.00956 * 15 14 12 43 43 H 1.09006 * 109.46562 * 60.00043 * 15 14 12 44 44 H 1.08997 * 109.47257 * 294.99815 * 20 16 15 45 45 H 1.08998 * 109.47181 * 55.00352 * 20 16 15 46 46 H 0.96996 * 120.00262 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3654 2.0326 -1.1914 5 6 2.8199 3.3383 -1.1935 6 6 2.9523 4.0252 -0.0023 7 6 2.6272 3.4138 1.1968 8 6 2.1644 2.1094 1.2015 9 8 1.8274 1.4734 2.3535 10 6 2.3011 2.0244 3.5832 11 6 1.9856 3.5256 3.5940 12 6 2.7907 4.1939 2.4766 13 1 3.8446 4.2184 2.7537 14 7 2.3055 5.5662 2.2781 15 6 2.9534 6.4943 3.2144 16 6 2.4233 7.9100 2.9781 17 1 2.5633 8.1804 1.9315 18 6 0.9901 7.9590 3.3103 19 7 -0.1156 7.9978 3.5655 20 6 3.1867 8.8951 3.8658 21 6 2.7510 10.3016 3.5451 22 1 2.0041 10.4756 2.7846 23 6 3.3052 11.3665 4.2234 24 7 2.9247 12.5940 3.9439 25 14 4.5965 11.0657 5.5393 26 1 5.9463 11.0779 4.9203 27 1 4.5137 12.1340 6.5674 28 1 4.3559 9.7460 6.1763 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.2671 1.4931 -2.1218 35 1 3.0754 3.8196 -2.1259 36 1 3.3114 5.0437 -0.0063 37 1 1.8004 1.5380 4.4203 38 1 3.3778 1.8743 3.6620 39 1 0.9203 3.6785 3.4211 40 1 2.2674 3.9533 4.5561 41 1 2.4407 5.8629 1.3232 42 1 2.7335 6.1904 4.2379 43 1 4.0315 6.4781 3.0544 44 1 2.9756 8.6793 4.9132 45 1 4.2565 8.7954 3.6827 46 1 3.3148 13.3431 4.4208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584345975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:41 Heat of formation + Delta-G solvation = -22.028401 kcal Electronic energy + Delta-G solvation = -25640.381482 eV Core-core repulsion = 22107.536679 eV Total energy + Delta-G solvation = -3532.844803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82776 -38.95259 -38.54219 -37.27886 -35.64783 -34.79184 -33.82250 -32.11508 -31.40012 -30.01268 -28.65351 -25.77501 -25.06809 -24.53751 -23.50163 -23.27669 -21.69887 -20.67862 -19.08755 -18.87798 -18.34821 -17.56514 -17.07889 -16.54129 -16.12726 -15.89707 -15.54551 -15.45407 -15.12849 -15.03268 -14.98206 -14.44816 -14.41353 -14.27885 -14.06814 -13.86008 -13.60542 -13.45016 -13.26883 -13.15788 -12.94213 -12.78064 -12.52187 -12.37449 -12.17273 -12.06741 -11.98077 -11.73576 -11.67818 -11.65584 -11.58777 -11.32067 -11.16511 -10.73134 -9.79775 -9.29441 -8.97417 -8.24705 -6.30552 0.36026 0.50481 1.42210 1.45778 1.55729 2.05114 2.12594 2.40104 2.41013 2.74911 3.10738 3.15424 3.31824 3.54590 3.73988 3.85061 4.03100 4.07705 4.15377 4.20110 4.32427 4.33692 4.40134 4.46713 4.55153 4.58201 4.61850 4.68730 4.72687 4.74467 4.77243 4.90215 4.98925 5.05088 5.09368 5.15836 5.20240 5.22995 5.41251 5.44552 5.48765 5.54679 5.63442 5.65143 5.90981 6.02607 6.25896 6.41301 6.52498 6.77294 6.90344 7.33994 8.92346 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.002762 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.131465 B =10133.590948 C =10360.967283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.127 4.127 4 C -0.091 4.091 5 C -0.152 4.152 6 C -0.098 4.098 7 C -0.168 4.168 8 C 0.123 3.877 9 O -0.325 6.325 10 C 0.061 3.939 11 C -0.148 4.148 12 C 0.137 3.863 13 H 0.073 0.927 14 N -0.697 5.697 15 C 0.074 3.926 16 C 0.025 3.975 17 H 0.115 0.885 18 C 0.262 3.738 19 N -0.517 5.517 20 C -0.002 4.002 21 C -0.531 4.531 22 H 0.028 0.972 23 C 0.002 3.998 24 N -0.955 5.955 25 Si 0.950 3.050 26 H -0.256 1.256 27 H -0.297 1.297 28 H -0.236 1.236 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.350 0.650 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.027 0.973 45 H 0.064 0.936 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -28.808 -7.163 30.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.128 4.128 4 C -0.109 4.109 5 C -0.170 4.170 6 C -0.116 4.116 7 C -0.170 4.170 8 C 0.077 3.923 9 O -0.239 6.239 10 C -0.014 4.014 11 C -0.186 4.186 12 C 0.028 3.972 13 H 0.091 0.909 14 N -0.331 5.331 15 C -0.056 4.056 16 C 0.003 3.997 17 H 0.133 0.867 18 C -0.054 4.054 19 N -0.194 5.194 20 C -0.041 4.041 21 C -0.569 4.569 22 H 0.046 0.954 23 C -0.195 4.195 24 N -0.596 5.596 25 Si 0.772 3.228 26 H -0.181 1.181 27 H -0.223 1.223 28 H -0.159 1.159 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.172 0.828 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.799 -28.832 -6.316 29.759 hybrid contribution 1.269 1.341 0.159 1.853 sum 5.068 -27.492 -6.157 28.625 Atomic orbital electron populations 1.21682 0.94908 1.02060 1.01225 1.20354 0.96006 0.91334 1.03133 1.19723 1.04333 0.97832 0.90882 1.21162 0.97337 0.95117 0.97274 1.21288 1.01981 0.95150 0.98542 1.21060 0.98754 1.00189 0.91642 1.19963 1.06581 0.93990 0.96436 1.18703 0.96460 0.90615 0.86514 1.85958 1.72032 1.52616 1.13322 1.23170 1.00689 0.93091 0.84421 1.22235 1.00905 0.95657 0.99848 1.20236 0.97720 0.87523 0.91749 0.90891 1.60540 1.61828 1.01057 1.09668 1.22060 0.97723 0.88003 0.97806 1.19069 0.80834 0.96901 1.02909 0.86681 1.29423 0.95189 0.89609 0.91192 1.80977 1.14897 1.12177 1.11374 1.19579 0.97336 0.91582 0.95592 1.21407 1.22932 0.91726 1.20871 0.95403 1.26065 0.99376 0.94492 0.99567 1.70094 1.45566 0.99851 1.44067 0.85672 0.79411 0.79171 0.78506 1.18072 1.22348 1.15907 0.92835 0.94281 0.91180 0.91319 0.89585 0.83386 0.83834 0.84742 0.85629 0.90507 0.92225 0.88864 0.82824 0.90092 0.90052 0.95425 0.91743 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 71.98 0.71 -1.53 16 2 C -0.07 -1.12 5.74 29.85 0.17 -0.94 16 3 C -0.13 -2.47 5.15 -19.71 -0.10 -2.57 16 4 C -0.09 -1.51 9.67 22.22 0.21 -1.30 16 5 C -0.15 -2.56 10.04 22.25 0.22 -2.34 16 6 C -0.10 -1.86 8.92 22.30 0.20 -1.66 16 7 C -0.17 -3.58 5.56 -19.75 -0.11 -3.69 16 8 C 0.12 2.71 6.46 22.52 0.15 2.86 16 9 O -0.32 -6.95 9.29 -91.79 -0.85 -7.80 16 10 C 0.06 0.98 7.03 72.12 0.51 1.49 16 11 C -0.15 -2.89 5.61 30.75 0.17 -2.71 16 12 C 0.14 2.72 2.65 44.22 0.12 2.83 16 13 H 0.07 1.25 7.80 -2.38 -0.02 1.23 16 14 N -0.70 -15.92 6.00 -495.18 -2.97 -18.89 16 15 C 0.07 1.72 4.84 86.30 0.42 2.13 16 16 C 0.02 0.81 2.35 -12.60 -0.03 0.78 16 17 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 18 C 0.26 10.72 13.67 89.45 1.22 11.95 16 19 N -0.52 -23.93 18.53 20.00 0.37 -23.56 16 20 C 0.00 -0.07 3.49 29.85 0.10 0.03 16 21 C -0.53 -28.45 9.15 25.60 0.23 -28.22 16 22 H 0.03 1.69 7.84 -2.91 -0.02 1.67 16 23 C 0.00 0.09 5.47 84.65 0.46 0.55 16 24 N -0.96 -59.05 13.96 21.45 0.30 -58.75 16 25 Si 0.95 40.97 27.47 68.60 1.88 42.86 16 26 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 27 H -0.30 -13.22 7.11 99.48 0.71 -12.52 16 28 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 32 H 0.07 1.14 7.62 -2.39 -0.02 1.12 16 33 H 0.09 1.01 8.05 -2.39 -0.02 0.99 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.13 2.16 6.62 -2.91 -0.02 2.14 16 37 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 1.59 7.81 -2.39 -0.02 1.58 16 41 H 0.35 7.43 6.19 -89.69 -0.55 6.88 16 42 H 0.08 1.88 7.71 -2.39 -0.02 1.86 16 43 H 0.08 1.46 8.05 -2.38 -0.02 1.44 16 44 H 0.03 1.09 7.20 -2.39 -0.02 1.07 16 45 H 0.06 2.19 7.57 -2.39 -0.02 2.18 16 46 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -72.73 375.58 3.76 -68.97 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.37 Total: 19.52 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.66 Total: -22.35 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -2.30 Total: -101.20 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.85 Total: -7.80 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.86 kcal Total: -72.73 3.76 -68.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584345975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.943 kcal (2) G-P(sol) polarization free energy of solvation -72.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds