Wall clock time and date at job start Tue Mar 31 2020 10:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38264 * 119.99961 * 2 1 4 4 C 1.38207 * 119.99832 * 180.22917 * 3 2 1 5 5 C 1.38262 * 120.00037 * 359.80664 * 4 3 2 6 6 C 1.38208 * 120.00386 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00045 * 179.78372 * 2 1 3 8 8 C 1.50697 * 120.00093 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47133 * 353.98306 * 8 7 2 10 10 C 1.53000 * 109.47025 * 233.98656 * 8 7 2 11 11 C 1.50699 * 109.47241 * 113.98478 * 8 7 2 12 12 N 1.29941 * 126.28613 * 59.68904 * 11 8 7 13 13 O 1.21308 * 110.24892 * 179.84427 * 12 11 8 14 14 C 1.33635 * 109.80830 * 0.42315 * 13 12 11 15 15 C 1.50701 * 126.54868 * 179.75745 * 14 13 12 16 16 C 1.53002 * 109.47195 * 269.97732 * 15 14 13 17 17 C 1.52999 * 109.47207 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47279 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47267 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00051 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00100 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00063 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99956 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46736 * 90.00610 * 23 21 19 25 25 H 1.48497 * 109.47209 * 210.00243 * 23 21 19 26 26 H 1.48497 * 109.47474 * 330.00960 * 23 21 19 27 27 N 1.31132 * 106.90252 * 359.73876 * 14 13 12 28 28 H 1.08999 * 109.47595 * 264.55050 * 1 2 3 29 29 H 1.09004 * 109.47036 * 24.55323 * 1 2 3 30 30 H 1.09008 * 109.46784 * 144.54708 * 1 2 3 31 31 H 1.07996 * 119.99624 * 0.05388 * 3 2 1 32 32 H 1.07997 * 119.99910 * 179.82695 * 4 3 2 33 33 H 1.08004 * 119.99675 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.00466 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47826 * 59.99774 * 10 8 7 36 36 H 1.08998 * 109.47146 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.47274 * 299.99558 * 10 8 7 38 38 H 1.08999 * 109.47329 * 29.97802 * 15 14 13 39 39 H 1.09000 * 109.47036 * 149.97706 * 15 14 13 40 40 H 1.09001 * 109.46866 * 299.99731 * 16 15 14 41 41 H 1.09000 * 109.47149 * 60.00044 * 16 15 14 42 42 H 1.09007 * 109.46968 * 300.00267 * 17 16 15 43 43 H 1.09000 * 109.47130 * 59.99322 * 17 16 15 44 44 H 1.09008 * 109.47009 * 299.99429 * 18 17 16 45 45 H 1.09000 * 109.47268 * 59.99737 * 18 17 16 46 46 H 0.97001 * 120.00339 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0055 6 6 3.5807 -1.1970 -0.0010 7 6 2.1981 -1.1970 0.0045 8 6 1.4446 -2.5020 0.0089 9 1 0.3779 -2.3053 0.1155 10 6 1.9237 -3.3636 1.1789 11 6 1.6941 -3.2305 -1.2866 12 7 2.8481 -3.6187 -1.7406 13 8 2.7123 -4.1797 -2.8076 14 6 1.4207 -4.1950 -3.1500 15 6 0.8313 -4.7909 -4.4025 16 6 0.7960 -3.7300 -5.5043 17 6 0.1971 -4.3348 -6.7757 18 6 0.1624 -3.2741 -7.8777 19 6 -0.4270 -3.8699 -9.1301 20 1 -0.7447 -4.9022 -9.1393 21 6 -0.5607 -3.0974 -10.2643 22 7 -0.1734 -1.8407 -10.2533 23 14 -1.2906 -3.8363 -11.8170 24 1 -2.7629 -3.6425 -11.8125 25 1 -0.7068 -3.1654 -13.0062 26 1 -0.9826 -5.2881 -11.8665 27 7 0.7640 -3.5930 -2.1878 28 1 -0.3634 -0.0976 1.0230 29 1 -0.3633 0.9348 -0.4271 30 1 -0.3633 -0.8372 -0.5961 31 1 1.6583 2.1326 0.0009 32 1 4.1204 2.1327 -0.0076 33 1 5.3517 0.0000 -0.0089 34 1 4.1207 -2.1322 -0.0011 35 1 1.7433 -2.8368 2.1160 36 1 1.3785 -4.3074 1.1824 37 1 2.9905 -3.5604 1.0724 38 1 1.4434 -5.6321 -4.7275 39 1 -0.1821 -5.1365 -4.1983 40 1 0.1838 -2.8888 -5.1793 41 1 1.8094 -3.3844 -5.7085 42 1 0.8089 -5.1762 -7.1009 43 1 -0.8163 -4.6802 -6.5712 44 1 -0.4493 -2.4324 -7.5527 45 1 1.1760 -2.9291 -8.0820 46 1 -0.2678 -1.2970 -11.0511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589138518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:13 Heat of formation + Delta-G solvation = 56.146726 kcal Electronic energy + Delta-G solvation = -24982.675087 eV Core-core repulsion = 21453.220212 eV Total energy + Delta-G solvation = -3529.454875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.54268 -39.99622 -36.50785 -35.96167 -34.35445 -33.18602 -32.81193 -31.62895 -29.76481 -29.29819 -27.07700 -25.80051 -25.36716 -23.77929 -22.87740 -21.90247 -21.50982 -20.18254 -19.93698 -17.98039 -17.47551 -16.76339 -16.21511 -15.84358 -15.35579 -15.11423 -14.76883 -14.54247 -14.32520 -13.99358 -13.92084 -13.32633 -13.06717 -12.98592 -12.92606 -12.61493 -12.30841 -12.21727 -12.14110 -12.06230 -11.80951 -11.69445 -11.50090 -11.09034 -11.05492 -11.02968 -10.84175 -10.64831 -10.57782 -10.53232 -9.89673 -9.70919 -9.30530 -9.05240 -9.00771 -8.83011 -8.34374 -5.99226 -4.01814 1.04178 1.18012 1.22811 2.24689 2.88176 3.32383 3.38529 3.38833 3.41779 3.68057 4.00656 4.41938 4.46479 4.52729 4.69095 4.74550 4.86222 4.91504 5.08356 5.08885 5.19359 5.24011 5.26749 5.36065 5.36851 5.39390 5.44691 5.55637 5.58145 5.63936 5.76949 5.82253 5.86917 5.93120 5.95533 6.07161 6.07911 6.26698 6.31642 6.35572 6.41266 6.68329 6.79072 6.83511 7.10581 7.68207 7.82102 8.00817 8.20013 8.42684 9.05618 9.62339 11.12125 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.002386 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.803858 B =11733.466231 C =12541.849899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.123 4.123 4 C -0.113 4.113 5 C -0.128 4.128 6 C -0.095 4.095 7 C -0.088 4.088 8 C 0.038 3.962 9 H 0.113 0.887 10 C -0.140 4.140 11 C 0.176 3.824 12 N -0.384 5.384 13 O 0.074 5.926 14 C 0.198 3.802 15 C -0.031 4.031 16 C -0.115 4.115 17 C -0.108 4.108 18 C 0.020 3.980 19 C -0.521 4.521 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 N -0.486 5.486 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 0.830 25.680 26.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.131 4.131 5 C -0.146 4.146 6 C -0.113 4.113 7 C -0.089 4.089 8 C 0.018 3.982 9 H 0.130 0.870 10 C -0.198 4.198 11 C -0.097 4.097 12 N -0.092 5.092 13 O 0.016 5.984 14 C -0.022 4.022 15 C -0.070 4.070 16 C -0.154 4.154 17 C -0.146 4.146 18 C -0.017 4.017 19 C -0.559 4.559 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 N -0.219 5.219 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.823 1.267 26.201 26.870 hybrid contribution -0.304 -0.262 -1.165 1.233 sum 5.518 1.005 25.036 25.657 Atomic orbital electron populations 1.20916 0.91025 1.03516 1.02496 1.19797 0.96192 0.92412 0.98758 1.21027 0.94298 0.97355 1.01379 1.21173 0.94344 0.98096 0.99521 1.21123 0.99940 0.92399 1.01107 1.21065 0.93475 0.98502 0.98271 1.19418 0.93723 0.93062 1.02666 1.18522 1.01914 0.90679 0.87044 0.86953 1.21851 1.02158 0.99290 0.96537 1.25536 0.84564 1.00449 0.99115 1.74523 1.23443 1.14033 0.97226 1.85294 1.29740 1.55577 1.27778 1.29122 0.80306 0.94829 0.97935 1.20532 1.01572 0.99314 0.85545 1.21733 1.02381 0.97029 0.94250 1.21630 0.99243 1.00050 0.93649 1.19099 0.97240 0.93496 0.91885 1.21261 1.40893 0.97426 0.96344 0.92632 1.25034 0.95673 0.94878 0.98938 1.69963 1.47660 1.06827 1.29046 0.86604 0.79292 0.79288 0.82876 1.20679 1.21259 1.19863 1.71906 1.31360 1.16209 1.02427 0.90893 0.91212 0.90698 0.85886 0.86027 0.86027 0.85677 0.90955 0.91848 0.91662 0.88101 0.87308 0.91524 0.91701 0.92911 0.92918 0.96595 0.96580 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.14 36.01 0.33 -0.75 16 2 C -0.07 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.21 9.68 -39.58 -0.38 -1.59 16 4 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16 5 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 6 C -0.10 -1.07 8.56 -39.58 -0.34 -1.41 16 7 C -0.09 -0.99 4.77 -104.62 -0.50 -1.49 16 8 C 0.04 0.41 2.76 -92.93 -0.26 0.16 16 9 H 0.11 1.12 5.73 -51.93 -0.30 0.82 16 10 C -0.14 -1.22 8.92 37.16 0.33 -0.89 16 11 C 0.18 2.42 6.65 -156.38 -1.04 1.38 16 12 N -0.38 -5.54 11.24 30.90 0.35 -5.20 16 13 O 0.07 1.06 11.31 18.12 0.20 1.27 16 14 C 0.20 2.75 7.77 -13.06 -0.10 2.65 16 15 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 16 C -0.12 -1.82 5.20 -26.73 -0.14 -1.96 16 17 C -0.11 -2.06 5.15 -26.73 -0.14 -2.20 16 18 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 19 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 23 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 N -0.49 -7.15 11.55 -9.87 -0.11 -7.26 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 30 H 0.07 0.72 6.55 -51.92 -0.34 0.38 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.13 1.39 6.82 -52.49 -0.36 1.03 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.59 7.09 -51.93 -0.37 0.23 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -32.09 382.22 -9.69 -41.77 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.24 Total: -2.38 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -4.36 Total: -24.23 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.97 Total: -38.73 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.09 -9.69 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589138518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.919 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds