Wall clock time and date at job start Tue Mar 31 2020 10:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38264 * 119.99961 * 2 1 4 4 C 1.38207 * 119.99832 * 180.22917 * 3 2 1 5 5 C 1.38262 * 120.00037 * 359.80664 * 4 3 2 6 6 C 1.38208 * 120.00386 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00045 * 179.78372 * 2 1 3 8 8 C 1.50697 * 120.00093 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47133 * 353.98306 * 8 7 2 10 10 C 1.53000 * 109.47025 * 233.98656 * 8 7 2 11 11 C 1.50699 * 109.47241 * 113.98478 * 8 7 2 12 12 N 1.29941 * 126.28613 * 59.68904 * 11 8 7 13 13 O 1.21308 * 110.24892 * 179.84427 * 12 11 8 14 14 C 1.33635 * 109.80830 * 0.42315 * 13 12 11 15 15 C 1.50701 * 126.54868 * 179.75745 * 14 13 12 16 16 C 1.53002 * 109.47195 * 269.97732 * 15 14 13 17 17 C 1.52999 * 109.47207 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47279 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47267 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00051 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00100 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00063 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99956 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46736 * 90.00610 * 23 21 19 25 25 H 1.48497 * 109.47209 * 210.00243 * 23 21 19 26 26 H 1.48497 * 109.47474 * 330.00960 * 23 21 19 27 27 N 1.31132 * 106.90252 * 359.73876 * 14 13 12 28 28 H 1.08999 * 109.47595 * 264.55050 * 1 2 3 29 29 H 1.09004 * 109.47036 * 24.55323 * 1 2 3 30 30 H 1.09008 * 109.46784 * 144.54708 * 1 2 3 31 31 H 1.07996 * 119.99624 * 0.05388 * 3 2 1 32 32 H 1.07997 * 119.99910 * 179.82695 * 4 3 2 33 33 H 1.08004 * 119.99675 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.00466 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47826 * 59.99774 * 10 8 7 36 36 H 1.08998 * 109.47146 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.47274 * 299.99558 * 10 8 7 38 38 H 1.08999 * 109.47329 * 29.97802 * 15 14 13 39 39 H 1.09000 * 109.47036 * 149.97706 * 15 14 13 40 40 H 1.09001 * 109.46866 * 299.99731 * 16 15 14 41 41 H 1.09000 * 109.47149 * 60.00044 * 16 15 14 42 42 H 1.09007 * 109.46968 * 300.00267 * 17 16 15 43 43 H 1.09000 * 109.47130 * 59.99322 * 17 16 15 44 44 H 1.09008 * 109.47009 * 299.99429 * 18 17 16 45 45 H 1.09000 * 109.47268 * 59.99737 * 18 17 16 46 46 H 0.97001 * 120.00339 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0055 6 6 3.5807 -1.1970 -0.0010 7 6 2.1981 -1.1970 0.0045 8 6 1.4446 -2.5020 0.0089 9 1 0.3779 -2.3053 0.1155 10 6 1.9237 -3.3636 1.1789 11 6 1.6941 -3.2305 -1.2866 12 7 2.8481 -3.6187 -1.7406 13 8 2.7123 -4.1797 -2.8076 14 6 1.4207 -4.1950 -3.1500 15 6 0.8313 -4.7909 -4.4025 16 6 0.7960 -3.7300 -5.5043 17 6 0.1971 -4.3348 -6.7757 18 6 0.1624 -3.2741 -7.8777 19 6 -0.4270 -3.8699 -9.1301 20 1 -0.7447 -4.9022 -9.1393 21 6 -0.5607 -3.0974 -10.2643 22 7 -0.1734 -1.8407 -10.2533 23 14 -1.2906 -3.8363 -11.8170 24 1 -2.7629 -3.6425 -11.8125 25 1 -0.7068 -3.1654 -13.0062 26 1 -0.9826 -5.2881 -11.8665 27 7 0.7640 -3.5930 -2.1878 28 1 -0.3634 -0.0976 1.0230 29 1 -0.3633 0.9348 -0.4271 30 1 -0.3633 -0.8372 -0.5961 31 1 1.6583 2.1326 0.0009 32 1 4.1204 2.1327 -0.0076 33 1 5.3517 0.0000 -0.0089 34 1 4.1207 -2.1322 -0.0011 35 1 1.7433 -2.8368 2.1160 36 1 1.3785 -4.3074 1.1824 37 1 2.9905 -3.5604 1.0724 38 1 1.4434 -5.6321 -4.7275 39 1 -0.1821 -5.1365 -4.1983 40 1 0.1838 -2.8888 -5.1793 41 1 1.8094 -3.3844 -5.7085 42 1 0.8089 -5.1762 -7.1009 43 1 -0.8163 -4.6802 -6.5712 44 1 -0.4493 -2.4324 -7.5527 45 1 1.1760 -2.9291 -8.0820 46 1 -0.2678 -1.2970 -11.0511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589138518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:13 Heat of formation + Delta-G solvation = 39.357824 kcal Electronic energy + Delta-G solvation = -24983.403108 eV Core-core repulsion = 21453.220212 eV Total energy + Delta-G solvation = -3530.182896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.62522 -40.76489 -37.53691 -37.23738 -35.61906 -34.69159 -33.76254 -32.98261 -30.89282 -30.47207 -27.79423 -27.48717 -26.24010 -24.98944 -24.20288 -23.01798 -22.35614 -21.80445 -20.84347 -19.09659 -18.53686 -18.35975 -17.53393 -16.68916 -16.52868 -16.36199 -16.18597 -15.66395 -15.41144 -14.75369 -14.69021 -14.62695 -14.28472 -14.04784 -13.85649 -13.70255 -13.59414 -13.46103 -13.29359 -13.00153 -12.87181 -12.81856 -12.62002 -12.51897 -12.34102 -12.25625 -12.16679 -12.05215 -11.84822 -11.65765 -11.36632 -11.34790 -11.17466 -10.76758 -10.52682 -9.80177 -9.59466 -8.17420 -6.28379 0.08691 0.30414 0.41191 1.18755 1.42349 1.43561 1.54626 1.82580 2.43248 2.50195 2.81540 3.04833 3.16177 3.59965 3.71412 3.92042 3.95893 4.03829 4.06919 4.12214 4.13760 4.25308 4.38901 4.43282 4.54633 4.63347 4.69365 4.71028 4.76983 4.77678 4.79613 4.84883 4.89559 4.93059 4.95240 5.06918 5.14977 5.17554 5.25337 5.31578 5.33461 5.50838 5.55145 5.58303 5.63662 5.80939 5.90820 6.04438 6.27906 6.90463 7.12542 7.41247 8.94599 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.002386 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.803858 B =11733.466231 C =12541.849899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.138 4.138 6 C -0.110 4.110 7 C -0.102 4.102 8 C 0.037 3.963 9 H 0.119 0.881 10 C -0.134 4.134 11 C 0.175 3.825 12 N -0.396 5.396 13 O 0.065 5.935 14 C 0.198 3.802 15 C -0.020 4.020 16 C -0.105 4.105 17 C -0.095 4.095 18 C 0.019 3.981 19 C -0.540 4.540 20 H 0.066 0.934 21 C -0.005 4.005 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.260 1.260 27 N -0.503 5.503 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.063 0.937 44 H -0.014 1.014 45 H -0.012 1.012 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -0.125 26.235 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.156 4.156 6 C -0.128 4.128 7 C -0.103 4.103 8 C 0.018 3.982 9 H 0.137 0.863 10 C -0.192 4.192 11 C -0.098 4.098 12 N -0.106 5.106 13 O 0.010 5.990 14 C -0.022 4.022 15 C -0.058 4.058 16 C -0.144 4.144 17 C -0.132 4.132 18 C -0.018 4.018 19 C -0.578 4.578 20 H 0.084 0.916 21 C -0.202 4.202 22 N -0.578 5.578 23 Si 0.789 3.211 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.184 1.184 27 N -0.237 5.237 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.004 0.996 45 H 0.007 0.993 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.259 0.290 26.761 27.275 hybrid contribution -0.102 0.112 -1.315 1.323 sum 5.157 0.401 25.447 25.967 Atomic orbital electron populations 1.20927 0.89942 1.03333 1.03493 1.20092 0.97210 0.92522 0.98704 1.21347 0.94712 0.97945 1.00912 1.21497 0.94549 0.98832 0.98683 1.21394 1.00921 0.92367 1.00944 1.21150 0.93743 0.98786 0.99100 1.19534 0.93872 0.93456 1.03400 1.18697 1.02398 0.90713 0.86432 0.86278 1.21826 1.01629 0.99304 0.96472 1.26070 0.84117 0.99880 0.99705 1.74523 1.23933 1.14679 0.97483 1.85275 1.30004 1.55813 1.27948 1.29364 0.80168 0.94469 0.98205 1.20493 1.03220 0.98522 0.83584 1.21500 1.01241 0.97528 0.94130 1.21414 1.00576 0.98383 0.92854 1.19054 0.94706 0.94414 0.93657 1.21770 1.40632 0.98010 0.97385 0.91588 1.26026 0.96121 0.95255 1.02821 1.70110 1.49089 1.08445 1.30141 0.85450 0.78517 0.78966 0.78143 1.19852 1.21096 1.18368 1.71923 1.32001 1.16730 1.03045 0.89042 0.90527 0.91904 0.84016 0.83801 0.84522 0.86246 0.89152 0.91499 0.92354 0.85260 0.85552 0.93052 0.92477 0.91453 0.91824 0.99552 0.99330 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.14 71.24 0.65 -1.34 16 2 C -0.09 -1.74 5.88 -19.86 -0.12 -1.86 16 3 C -0.13 -2.44 9.68 22.27 0.22 -2.22 16 4 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 5 C -0.14 -2.73 10.05 22.27 0.22 -2.51 16 6 C -0.11 -2.46 8.56 22.27 0.19 -2.27 16 7 C -0.10 -2.26 4.77 -19.87 -0.09 -2.36 16 8 C 0.04 0.79 2.76 -12.29 -0.03 0.76 16 9 H 0.12 2.31 5.73 -2.39 -0.01 2.30 16 10 C -0.13 -2.24 8.92 71.98 0.64 -1.60 16 11 C 0.18 4.77 6.65 138.46 0.92 5.69 16 12 N -0.40 -11.42 11.24 -60.33 -0.68 -12.10 16 13 O 0.07 1.85 11.31 74.89 0.85 2.70 16 14 C 0.20 5.32 7.77 88.38 0.69 6.00 16 15 C -0.02 -0.44 5.84 29.85 0.17 -0.27 16 16 C -0.11 -3.26 5.20 30.59 0.16 -3.10 16 17 C -0.09 -3.52 5.15 30.59 0.16 -3.37 16 18 C 0.02 0.98 4.97 29.85 0.15 1.12 16 19 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 20 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 21 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 22 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 23 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 27 N -0.50 -14.54 11.55 -303.21 -3.50 -18.05 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.13 8.05 -2.38 -0.02 1.11 16 30 H 0.06 1.19 6.55 -2.38 -0.02 1.17 16 31 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 32 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.12 2.72 6.82 -2.91 -0.02 2.70 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.05 7.09 -2.39 -0.02 1.03 16 38 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 44 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 45 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -70.00 382.22 4.78 -65.22 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.96 Total: 12.63 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.84 Total: -39.08 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -3.90 Total: -87.50 kcal Atomic # 8 Polarization: 1.85 SS G_CDS: 0.85 Total: 2.70 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -70.00 4.78 -65.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589138518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.574 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds