Wall clock time and date at job start Tue Mar 31 2020 10:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38252 * 119.99663 * 2 1 4 4 C 1.38222 * 119.99249 * 180.25745 * 3 2 1 5 5 C 1.38251 * 120.00236 * 359.53319 * 4 3 2 6 6 C 1.38210 * 119.99934 * 0.40725 * 5 4 3 7 7 C 1.38211 * 119.99804 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99898 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.47463 * 5.77631 * 8 7 2 10 10 C 1.53001 * 109.46673 * 125.77768 * 8 7 2 11 11 C 1.50694 * 109.46991 * 245.77454 * 8 7 2 12 12 N 1.29949 * 126.28901 * 300.02832 * 11 8 7 13 13 O 1.21305 * 110.25294 * 179.97438 * 12 11 8 14 14 C 1.33645 * 109.80754 * 359.97438 * 13 12 11 15 15 C 1.50703 * 126.54975 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47231 * 269.97482 * 15 14 13 17 17 C 1.53005 * 109.47004 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47004 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47064 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00112 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00128 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00292 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99744 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47065 * 90.00124 * 23 21 19 25 25 H 1.48504 * 109.46907 * 210.00225 * 23 21 19 26 26 H 1.48503 * 109.47270 * 329.99614 * 23 21 19 27 27 N 1.31128 * 106.89783 * 359.76846 * 14 13 12 28 28 H 1.08997 * 109.47293 * 95.65671 * 1 2 3 29 29 H 1.08992 * 109.46930 * 215.66143 * 1 2 3 30 30 H 1.08998 * 109.46834 * 335.65821 * 1 2 3 31 31 H 1.07999 * 120.00864 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.99543 * 179.72533 * 4 3 2 33 33 H 1.08002 * 120.00218 * 180.23257 * 5 4 3 34 34 H 1.08000 * 120.00253 * 179.83353 * 6 5 4 35 35 H 1.09004 * 109.47455 * 60.00169 * 10 8 7 36 36 H 1.09006 * 109.46809 * 179.97438 * 10 8 7 37 37 H 1.08994 * 109.47446 * 299.99353 * 10 8 7 38 38 H 1.09003 * 109.46679 * 29.97743 * 15 14 13 39 39 H 1.09001 * 109.46828 * 149.97511 * 15 14 13 40 40 H 1.08997 * 109.47273 * 300.00139 * 16 15 14 41 41 H 1.09007 * 109.46752 * 60.00254 * 16 15 14 42 42 H 1.09003 * 109.47083 * 300.00369 * 17 16 15 43 43 H 1.09001 * 109.46651 * 60.00276 * 17 16 15 44 44 H 1.08997 * 109.47273 * 300.00496 * 18 17 16 45 45 H 1.09007 * 109.46752 * 60.00610 * 18 17 16 46 46 H 0.96996 * 120.00220 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1970 0.0002 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.3774 -2.3056 -0.1014 10 6 1.9194 -3.3661 -1.1682 11 6 1.6987 -3.2277 1.2977 12 7 2.8537 -3.6196 1.7461 13 8 2.7224 -4.1736 2.8172 14 6 1.4320 -4.1877 3.1646 15 6 0.8472 -4.7807 4.4205 16 6 0.4807 -6.2450 4.1705 17 6 -0.1125 -6.8472 5.4458 18 6 -0.4796 -8.3113 5.1955 19 6 -1.0644 -8.9043 6.4514 20 1 -1.1647 -8.2975 7.3392 21 6 -1.4715 -10.2215 6.4672 22 7 -1.9823 -10.7389 7.5630 23 14 -1.2973 -11.2712 4.9318 24 1 0.0285 -11.9399 4.9372 25 1 -2.3698 -12.2983 4.9102 26 1 -1.4126 -10.4099 3.7276 27 7 0.7726 -3.5829 2.2060 28 1 -0.3634 -0.1013 -1.0226 29 1 -0.3633 -0.8349 0.5991 30 1 -0.3633 0.9363 0.4236 31 1 1.6584 2.1327 -0.0004 32 1 4.1205 2.1326 -0.0099 33 1 5.3517 -0.0001 -0.0014 34 1 4.1206 -2.1323 0.0009 35 1 2.9866 -3.5627 -1.0651 36 1 1.3747 -4.3103 -1.1671 37 1 1.7356 -2.8414 -2.1057 38 1 1.5799 -4.7218 5.2254 39 1 -0.0474 -4.2253 4.7022 40 1 -0.2519 -6.3038 3.3656 41 1 1.3754 -6.8004 3.8889 42 1 0.6205 -6.7884 6.2504 43 1 -1.0070 -6.2918 5.7278 44 1 -1.2126 -8.3697 4.3910 45 1 0.4148 -8.8669 4.9133 46 1 -2.2684 -11.6656 7.5742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589138519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:17 Heat of formation + Delta-G solvation = 59.699747 kcal Electronic energy + Delta-G solvation = -24861.660641 eV Core-core repulsion = 21332.359836 eV Total energy + Delta-G solvation = -3529.300804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.60866 -40.09465 -36.57963 -36.08195 -34.44423 -33.24816 -32.84736 -31.74741 -29.88807 -29.62597 -27.18097 -26.08671 -25.42922 -23.83148 -22.83662 -21.90330 -21.52436 -20.21464 -19.96889 -18.07976 -17.53008 -16.84122 -16.65668 -15.93449 -15.42752 -15.23408 -14.84870 -14.55548 -14.23084 -14.07675 -14.01052 -13.42825 -13.12005 -13.09193 -12.88883 -12.72019 -12.58927 -12.35651 -12.32111 -12.23340 -11.87974 -11.80984 -11.61189 -11.23290 -11.15752 -11.13730 -10.94018 -10.87368 -10.65672 -10.09061 -9.90555 -9.73832 -9.50746 -9.17991 -9.12165 -8.93690 -8.53709 -6.04282 -4.02289 0.94506 1.07708 1.15176 2.18047 2.81184 3.29764 3.30968 3.38575 3.42221 3.60094 3.94416 4.34524 4.43710 4.45423 4.59540 4.65423 4.78268 4.85788 4.97512 5.01818 5.11942 5.12909 5.18792 5.28509 5.29999 5.30851 5.36260 5.48348 5.51474 5.57104 5.70497 5.75911 5.78853 5.83889 5.85444 5.92879 5.99672 6.16315 6.20989 6.21419 6.31720 6.52074 6.62621 6.68558 6.88322 7.29037 7.42007 7.79497 8.13536 8.53621 9.00780 9.58465 11.09143 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.002137 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.653495 B =13101.489553 C =13186.350952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 C -0.123 4.123 4 C -0.114 4.114 5 C -0.128 4.128 6 C -0.095 4.095 7 C -0.086 4.086 8 C 0.038 3.962 9 H 0.113 0.887 10 C -0.142 4.142 11 C 0.177 3.823 12 N -0.383 5.383 13 O 0.074 5.926 14 C 0.197 3.803 15 C -0.031 4.031 16 C -0.118 4.118 17 C -0.101 4.101 18 C -0.015 4.015 19 C -0.521 4.521 20 H 0.072 0.928 21 C 0.065 3.935 22 N -0.904 5.904 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.266 1.266 27 N -0.485 5.485 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.011 0.989 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.949 24.032 -18.114 31.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.113 4.113 7 C -0.087 4.087 8 C 0.018 3.982 9 H 0.131 0.869 10 C -0.200 4.200 11 C -0.096 4.096 12 N -0.092 5.092 13 O 0.016 5.984 14 C -0.023 4.023 15 C -0.070 4.070 16 C -0.156 4.156 17 C -0.138 4.138 18 C -0.053 4.053 19 C -0.558 4.558 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.543 5.543 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.190 1.190 27 N -0.218 5.218 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.261 24.162 -18.670 32.212 hybrid contribution 0.123 -0.745 -0.512 0.913 sum 10.384 23.417 -19.182 32.002 Atomic orbital electron populations 1.20915 0.91023 1.03350 1.02665 1.19795 0.96184 0.92399 0.98874 1.21018 0.94284 0.97310 1.01532 1.21170 0.94332 0.98075 0.99662 1.21128 0.99958 0.92384 1.01087 1.21091 0.93503 0.98559 0.98151 1.19437 0.93727 0.93094 1.02439 1.18533 1.01902 0.90668 0.87106 0.86923 1.21864 1.02247 0.99407 0.96463 1.25533 0.84617 1.00376 0.99104 1.74530 1.23506 1.13994 0.97145 1.85299 1.29783 1.55883 1.27390 1.29110 0.80301 0.94303 0.98582 1.20508 1.01480 0.97547 0.87429 1.21762 1.01617 0.91182 1.01089 1.21459 0.99844 0.98157 0.94375 1.19580 0.96115 0.91847 0.97722 1.21152 1.40550 0.96594 0.97552 0.90981 1.25046 0.94678 0.97943 0.95937 1.69913 1.42685 1.14398 1.27304 0.86780 0.77877 0.80282 0.84351 1.20323 1.21423 1.19027 1.71905 1.31254 1.16361 1.02323 0.90798 0.90699 0.91317 0.85931 0.86054 0.86012 0.85604 0.91638 0.91666 0.90918 0.87957 0.87174 0.91483 0.91677 0.92293 0.92283 0.96617 0.97051 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.14 36.01 0.33 -0.58 16 2 C -0.07 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -1.04 9.68 -39.58 -0.38 -1.42 16 4 C -0.11 -0.94 10.05 -39.58 -0.40 -1.33 16 5 C -0.13 -1.14 10.05 -39.59 -0.40 -1.54 16 6 C -0.10 -0.97 8.57 -39.59 -0.34 -1.31 16 7 C -0.09 -0.88 4.77 -104.62 -0.50 -1.38 16 8 C 0.04 0.39 2.76 -92.92 -0.26 0.13 16 9 H 0.11 1.07 5.72 -51.93 -0.30 0.78 16 10 C -0.14 -1.26 8.92 37.16 0.33 -0.93 16 11 C 0.18 2.33 6.65 -156.37 -1.04 1.29 16 12 N -0.38 -5.31 11.25 30.90 0.35 -4.97 16 13 O 0.07 1.02 11.31 18.09 0.20 1.22 16 14 C 0.20 2.60 7.77 -13.06 -0.10 2.50 16 15 C -0.03 -0.35 5.84 -27.88 -0.16 -0.52 16 16 C -0.12 -1.69 5.20 -26.73 -0.14 -1.83 16 17 C -0.10 -1.80 5.15 -26.73 -0.14 -1.94 16 18 C -0.02 -0.35 4.04 -27.88 -0.11 -0.47 16 19 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 20 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 21 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 22 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 23 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 27 N -0.49 -6.83 11.55 -9.86 -0.11 -6.95 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.62 6.54 -51.93 -0.34 0.28 16 30 H 0.07 0.43 8.05 -51.93 -0.42 0.02 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 1.31 6.82 -52.49 -0.36 0.95 16 35 H 0.06 0.61 7.09 -51.93 -0.37 0.24 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 45 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -32.29 378.63 -9.31 -41.60 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.21 Total: -2.83 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -4.35 Total: -23.79 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 1.01 Total: -38.94 kcal Atomic # 8 Polarization: 1.02 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.29 -9.31 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589138519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.300 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds