Wall clock time and date at job start Tue Mar 31 2020 10:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38252 * 119.99663 * 2 1 4 4 C 1.38222 * 119.99249 * 180.25745 * 3 2 1 5 5 C 1.38251 * 120.00236 * 359.53319 * 4 3 2 6 6 C 1.38210 * 119.99934 * 0.40725 * 5 4 3 7 7 C 1.38211 * 119.99804 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99898 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.47463 * 5.77631 * 8 7 2 10 10 C 1.53001 * 109.46673 * 125.77768 * 8 7 2 11 11 C 1.50694 * 109.46991 * 245.77454 * 8 7 2 12 12 N 1.29949 * 126.28901 * 300.02832 * 11 8 7 13 13 O 1.21305 * 110.25294 * 179.97438 * 12 11 8 14 14 C 1.33645 * 109.80754 * 359.97438 * 13 12 11 15 15 C 1.50703 * 126.54975 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47231 * 269.97482 * 15 14 13 17 17 C 1.53005 * 109.47004 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47004 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47064 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00112 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00128 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00292 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99744 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47065 * 90.00124 * 23 21 19 25 25 H 1.48504 * 109.46907 * 210.00225 * 23 21 19 26 26 H 1.48503 * 109.47270 * 329.99614 * 23 21 19 27 27 N 1.31128 * 106.89783 * 359.76846 * 14 13 12 28 28 H 1.08997 * 109.47293 * 95.65671 * 1 2 3 29 29 H 1.08992 * 109.46930 * 215.66143 * 1 2 3 30 30 H 1.08998 * 109.46834 * 335.65821 * 1 2 3 31 31 H 1.07999 * 120.00864 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.99543 * 179.72533 * 4 3 2 33 33 H 1.08002 * 120.00218 * 180.23257 * 5 4 3 34 34 H 1.08000 * 120.00253 * 179.83353 * 6 5 4 35 35 H 1.09004 * 109.47455 * 60.00169 * 10 8 7 36 36 H 1.09006 * 109.46809 * 179.97438 * 10 8 7 37 37 H 1.08994 * 109.47446 * 299.99353 * 10 8 7 38 38 H 1.09003 * 109.46679 * 29.97743 * 15 14 13 39 39 H 1.09001 * 109.46828 * 149.97511 * 15 14 13 40 40 H 1.08997 * 109.47273 * 300.00139 * 16 15 14 41 41 H 1.09007 * 109.46752 * 60.00254 * 16 15 14 42 42 H 1.09003 * 109.47083 * 300.00369 * 17 16 15 43 43 H 1.09001 * 109.46651 * 60.00276 * 17 16 15 44 44 H 1.08997 * 109.47273 * 300.00496 * 18 17 16 45 45 H 1.09007 * 109.46752 * 60.00610 * 18 17 16 46 46 H 0.96996 * 120.00220 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1970 0.0002 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.3774 -2.3056 -0.1014 10 6 1.9194 -3.3661 -1.1682 11 6 1.6987 -3.2277 1.2977 12 7 2.8537 -3.6196 1.7461 13 8 2.7224 -4.1736 2.8172 14 6 1.4320 -4.1877 3.1646 15 6 0.8472 -4.7807 4.4205 16 6 0.4807 -6.2450 4.1705 17 6 -0.1125 -6.8472 5.4458 18 6 -0.4796 -8.3113 5.1955 19 6 -1.0644 -8.9043 6.4514 20 1 -1.1647 -8.2975 7.3392 21 6 -1.4715 -10.2215 6.4672 22 7 -1.9823 -10.7389 7.5630 23 14 -1.2973 -11.2712 4.9318 24 1 0.0285 -11.9399 4.9372 25 1 -2.3698 -12.2983 4.9102 26 1 -1.4126 -10.4099 3.7276 27 7 0.7726 -3.5829 2.2060 28 1 -0.3634 -0.1013 -1.0226 29 1 -0.3633 -0.8349 0.5991 30 1 -0.3633 0.9363 0.4236 31 1 1.6584 2.1327 -0.0004 32 1 4.1205 2.1326 -0.0099 33 1 5.3517 -0.0001 -0.0014 34 1 4.1206 -2.1323 0.0009 35 1 2.9866 -3.5627 -1.0651 36 1 1.3747 -4.3103 -1.1671 37 1 1.7356 -2.8414 -2.1057 38 1 1.5799 -4.7218 5.2254 39 1 -0.0474 -4.2253 4.7022 40 1 -0.2519 -6.3038 3.3656 41 1 1.3754 -6.8004 3.8889 42 1 0.6205 -6.7884 6.2504 43 1 -1.0070 -6.2918 5.7278 44 1 -1.2126 -8.3697 4.3910 45 1 0.4148 -8.8669 4.9133 46 1 -2.2684 -11.6656 7.5742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589138519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:16 Heat of formation + Delta-G solvation = 42.157783 kcal Electronic energy + Delta-G solvation = -24862.421317 eV Core-core repulsion = 21332.359836 eV Total energy + Delta-G solvation = -3530.061481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.62755 -40.76170 -37.54589 -37.25540 -35.60755 -34.67442 -33.77340 -33.09873 -31.17307 -30.47814 -27.79287 -27.64392 -26.25081 -24.89200 -24.04094 -22.92396 -22.32132 -21.76574 -20.83535 -19.15066 -18.78505 -18.50391 -17.50968 -16.67910 -16.43533 -16.31449 -16.16249 -15.71537 -15.41870 -14.78518 -14.71524 -14.66284 -14.37917 -14.05113 -14.04196 -13.83116 -13.61647 -13.52162 -13.29205 -13.01888 -12.87242 -12.84331 -12.62606 -12.52637 -12.36813 -12.15923 -12.06835 -11.86277 -11.74819 -11.66403 -11.50390 -11.33085 -11.24813 -10.80734 -10.73354 -9.79391 -9.58753 -8.26751 -6.29860 0.09026 0.31352 0.42113 1.18630 1.37025 1.38769 1.50458 1.82157 2.37944 2.49779 2.81757 3.05113 3.08958 3.59792 3.70480 3.92088 3.96826 4.02275 4.07638 4.12751 4.13456 4.25328 4.40203 4.41522 4.54705 4.60951 4.66719 4.70911 4.75655 4.78497 4.79437 4.84625 4.85393 4.92790 4.94623 5.06618 5.12698 5.15732 5.18205 5.24687 5.26645 5.52006 5.56338 5.62252 5.64976 5.68547 5.71495 6.05305 6.32720 6.79211 7.12840 7.34782 8.89885 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.002137 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.653495 B =13101.489553 C =13186.350952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.138 4.138 6 C -0.111 4.111 7 C -0.100 4.100 8 C 0.037 3.963 9 H 0.119 0.881 10 C -0.137 4.137 11 C 0.176 3.824 12 N -0.396 5.396 13 O 0.066 5.934 14 C 0.198 3.802 15 C -0.023 4.023 16 C -0.106 4.106 17 C -0.094 4.094 18 C -0.017 4.017 19 C -0.529 4.529 20 H 0.036 0.964 21 C 0.000 4.000 22 N -0.952 5.952 23 Si 0.949 3.051 24 H -0.267 1.267 25 H -0.286 1.286 26 H -0.248 1.248 27 N -0.503 5.503 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.528 25.492 -20.075 34.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.156 4.156 6 C -0.129 4.129 7 C -0.101 4.101 8 C 0.017 3.983 9 H 0.137 0.863 10 C -0.195 4.195 11 C -0.097 4.097 12 N -0.106 5.106 13 O 0.010 5.990 14 C -0.021 4.021 15 C -0.061 4.061 16 C -0.145 4.145 17 C -0.131 4.131 18 C -0.055 4.055 19 C -0.567 4.567 20 H 0.054 0.946 21 C -0.196 4.196 22 N -0.593 5.593 23 Si 0.773 3.227 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.171 1.171 27 N -0.236 5.236 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.154 0.846 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.851 25.636 -20.629 34.648 hybrid contribution -0.060 -1.119 0.172 1.133 sum 10.791 24.517 -20.457 33.705 Atomic orbital electron populations 1.20927 0.89920 1.03474 1.03399 1.20071 0.97177 0.92414 0.98694 1.21347 0.94638 0.97893 1.00810 1.21499 0.94562 0.98741 0.98614 1.21380 1.00880 0.92340 1.00953 1.21139 0.93760 0.98780 0.99187 1.19494 0.93812 0.93323 1.03480 1.18682 1.02419 0.90878 0.86278 0.86275 1.21841 1.01617 0.99260 0.96794 1.26043 0.84196 0.99824 0.99686 1.74534 1.24013 1.14686 0.97377 1.85281 1.30067 1.56093 1.27518 1.29336 0.80150 0.93992 0.98669 1.20488 1.02666 0.95597 0.87382 1.21537 1.01323 0.92848 0.98752 1.21305 1.00262 0.95153 0.96397 1.19581 0.95881 0.94936 0.95064 1.21567 1.40225 0.96525 0.98425 0.94576 1.26036 0.94487 0.99665 0.99435 1.70069 1.44397 1.15000 1.29883 0.85675 0.78177 0.78433 0.80455 1.19252 1.21200 1.17122 1.71921 1.31822 1.17022 1.02870 0.89450 0.91839 0.90149 0.83801 0.83694 0.84612 0.86558 0.92376 0.91982 0.89123 0.85651 0.85974 0.91990 0.91332 0.91898 0.92328 0.96549 0.96430 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.14 71.24 0.65 -0.94 16 2 C -0.08 -1.43 5.88 -19.87 -0.12 -1.54 16 3 C -0.13 -1.90 9.68 22.27 0.22 -1.68 16 4 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 5 C -0.14 -2.30 10.05 22.27 0.22 -2.08 16 6 C -0.11 -2.21 8.57 22.27 0.19 -2.02 16 7 C -0.10 -1.98 4.77 -19.87 -0.09 -2.07 16 8 C 0.04 0.75 2.76 -12.29 -0.03 0.71 16 9 H 0.12 2.17 5.72 -2.39 -0.01 2.16 16 10 C -0.14 -2.34 8.92 71.98 0.64 -1.70 16 11 C 0.18 4.51 6.65 138.46 0.92 5.43 16 12 N -0.40 -10.81 11.25 -60.29 -0.68 -11.49 16 13 O 0.07 1.76 11.31 74.81 0.85 2.61 16 14 C 0.20 4.95 7.77 88.38 0.69 5.64 16 15 C -0.02 -0.47 5.84 29.85 0.17 -0.30 16 16 C -0.11 -2.82 5.20 30.60 0.16 -2.66 16 17 C -0.09 -3.22 5.15 30.60 0.16 -3.07 16 18 C -0.02 -0.78 4.04 29.85 0.12 -0.65 16 19 C -0.53 -30.11 9.66 25.60 0.25 -29.87 16 20 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 21 C 0.00 0.01 5.47 84.65 0.46 0.47 16 22 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 23 Si 0.95 44.38 27.47 68.60 1.88 46.27 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 27 N -0.50 -13.64 11.55 -303.16 -3.50 -17.14 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.98 6.54 -2.39 -0.02 0.97 16 30 H 0.08 0.85 8.05 -2.39 -0.02 0.83 16 31 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.12 2.46 6.82 -2.91 -0.02 2.44 16 35 H 0.06 1.07 7.09 -2.39 -0.02 1.05 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.79 8.14 -2.38 -0.02 1.78 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 45 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 46 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -70.27 378.63 4.58 -65.68 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.91 Total: 11.40 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 4.83 Total: -37.78 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.88 Total: -88.18 kcal Atomic # 8 Polarization: 1.76 SS G_CDS: 0.85 Total: 2.61 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -70.27 4.58 -65.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589138519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.839 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds