Wall clock time and date at job start Tue Mar 31 2020 11:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53300 * 1 3 3 C 1.51561 * 110.58135 * 2 1 4 4 C 1.52595 * 114.04108 * 99.79076 * 3 2 1 5 5 H 1.09757 * 111.80982 * 173.96225 * 4 3 2 6 6 C 1.54438 * 109.43567 * 297.72877 * 4 3 2 7 7 C 1.54307 * 104.47409 * 90.06676 * 6 4 3 8 8 C 1.54442 * 104.48048 * 359.97438 * 7 6 4 9 9 H 1.09750 * 111.28619 * 145.86773 * 8 7 6 10 10 C 1.51564 * 110.58659 * 130.00017 * 2 1 3 11 11 N 1.48096 * 108.10496 * 51.15562 * 4 3 2 12 12 C 1.34699 * 128.58795 * 105.64962 * 11 4 3 13 13 O 1.21583 * 120.00217 * 179.85436 * 12 11 4 14 14 N 1.34777 * 120.00029 * 359.85533 * 12 11 4 15 15 C 1.39955 * 119.99983 * 174.95449 * 14 12 11 16 16 C 1.39287 * 119.94668 * 215.04985 * 15 14 12 17 17 C 1.38498 * 120.42596 * 180.02562 * 16 15 14 18 18 C 1.37681 * 120.32253 * 0.02562 * 17 16 15 19 19 C 1.40735 * 119.88310 * 359.97438 * 18 17 16 20 20 C 1.41406 * 120.21235 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00094 * 150.09299 * 20 19 18 22 22 C 1.39935 * 120.00080 * 329.82793 * 20 19 18 23 23 N 1.30827 * 120.00339 * 162.51360 * 22 20 19 24 24 Si 1.86802 * 119.99613 * 342.51685 * 22 20 19 25 25 H 1.48506 * 109.47267 * 95.22747 * 24 22 20 26 26 H 1.48496 * 109.47339 * 215.22880 * 24 22 20 27 27 H 1.48502 * 109.47137 * 335.23118 * 24 22 20 28 28 C 1.38238 * 119.94422 * 35.33903 * 15 14 12 29 29 H 1.08996 * 109.47048 * 289.99694 * 1 2 3 30 30 H 1.08996 * 109.47713 * 50.00048 * 1 2 3 31 31 H 1.09004 * 109.46904 * 169.99883 * 1 2 3 32 32 H 1.11679 * 105.59716 * 244.99831 * 2 1 3 33 33 H 1.10082 * 109.11193 * 221.74244 * 3 2 1 34 34 H 1.10092 * 109.20003 * 337.75638 * 3 2 1 35 35 H 1.09262 * 110.17035 * 208.22021 * 6 4 3 36 36 H 1.08679 * 111.07447 * 330.32107 * 6 4 3 37 37 H 1.08684 * 111.00424 * 240.19785 * 7 6 4 38 38 H 1.09263 * 110.04664 * 118.23930 * 7 6 4 39 39 H 1.10080 * 109.11484 * 138.24112 * 10 2 1 40 40 H 1.10095 * 109.19141 * 22.23942 * 10 2 1 41 41 H 0.96998 * 119.99893 * 354.95947 * 14 12 11 42 42 H 1.07997 * 119.78802 * 0.02889 * 16 15 14 43 43 H 1.08002 * 119.83314 * 180.02562 * 17 16 15 44 44 H 1.07997 * 120.05450 * 179.97438 * 18 17 16 45 45 H 0.97002 * 120.00127 * 179.97438 * 23 22 20 46 46 H 1.07994 * 120.16625 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5330 0.0000 0.0000 3 6 2.0658 1.4189 0.0000 4 6 2.5062 1.9175 1.3733 5 1 2.9824 2.9047 1.3152 6 6 1.2916 1.9362 2.3270 7 6 1.2918 0.5377 2.9792 8 6 2.5061 -0.1810 2.3513 9 1 2.9825 -0.8600 3.0700 10 6 2.0659 -0.9120 1.0869 11 7 3.4242 0.9118 1.9555 12 6 4.7626 0.9761 2.0930 13 8 5.3666 0.0513 2.6012 14 7 5.4323 2.0654 1.6673 15 6 6.8069 2.1790 1.9047 16 6 7.3662 3.4270 2.1686 17 6 8.7253 3.5509 2.4044 18 6 9.5391 2.4406 2.3800 19 6 8.9880 1.1730 2.1147 20 6 9.8173 0.0280 2.0885 21 1 9.4164 -0.9356 2.3665 22 6 11.1558 0.1423 1.6970 23 7 12.0062 -0.8082 1.9887 24 14 11.7285 1.6521 0.7579 25 1 12.2966 2.6409 1.7092 26 1 12.7685 1.2580 -0.2262 27 1 10.5758 2.2578 0.0440 28 6 7.6083 1.0531 1.8710 29 1 -0.3633 0.3514 0.9657 30 1 -0.3634 0.6605 -0.7872 31 1 -0.3633 -1.0121 -0.1785 32 1 1.8333 -0.4546 -0.9749 33 1 2.9191 1.4835 -0.6925 34 1 1.2922 2.0961 -0.3936 35 1 1.4245 2.7057 3.0912 36 1 0.3685 2.1111 1.7808 37 1 0.3687 0.0066 2.7624 38 1 1.4249 0.6285 4.0599 39 1 2.9190 -1.4842 0.6911 40 1 1.2922 -1.6488 1.3527 41 1 4.9616 2.7708 1.1963 42 1 6.7360 4.3038 2.1895 43 1 9.1488 4.5232 2.6085 44 1 10.5984 2.5422 2.5641 45 1 12.9340 -0.7291 1.7170 46 1 7.1763 0.0855 1.6623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596925149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:49 Heat of formation + Delta-G solvation = -6.841009 kcal Electronic energy + Delta-G solvation = -26592.322541 eV Core-core repulsion = 23060.136313 eV Total energy + Delta-G solvation = -3532.186228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05726 -39.10611 -37.21942 -34.41809 -34.28547 -33.14896 -31.68691 -31.42566 -30.21803 -28.51721 -27.52500 -25.13788 -24.63271 -23.44266 -21.79923 -20.84156 -20.74924 -20.28930 -18.64205 -17.79295 -17.35693 -16.24078 -15.85987 -15.46032 -15.13282 -14.60921 -14.45315 -14.07036 -14.03273 -13.81976 -13.71135 -13.41577 -13.26097 -12.73910 -12.72341 -12.59713 -12.45478 -11.93259 -11.91616 -11.87190 -11.48799 -11.34635 -11.03127 -10.99881 -10.74781 -10.66111 -10.48457 -10.47826 -10.36456 -9.85227 -9.80251 -9.46413 -9.20625 -8.96761 -8.56137 -7.57426 -7.04558 -6.84788 -4.38872 2.53495 2.69451 2.82687 3.17142 3.28435 3.38033 3.59268 4.06582 4.08545 4.30228 4.42975 4.51941 4.60134 4.71716 4.76219 4.88653 4.92971 5.05983 5.13179 5.30546 5.41001 5.42937 5.50621 5.54518 5.56182 5.67199 5.76593 5.86621 5.91508 5.93034 6.04723 6.05559 6.07293 6.12924 6.25785 6.29859 6.50538 6.72803 6.82206 6.94672 7.16480 7.33570 7.58125 7.67686 7.74011 8.01633 8.17695 8.35338 8.48450 8.77032 8.89579 9.00881 10.17885 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.003302 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.704345 B = 8478.802384 C = 8867.008483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.120 4.120 4 C 0.132 3.868 5 H 0.087 0.913 6 C -0.127 4.127 7 C -0.130 4.130 8 C 0.156 3.844 9 H 0.099 0.901 10 C -0.121 4.121 11 N -0.635 5.635 12 C 0.725 3.275 13 O -0.562 6.562 14 N -0.681 5.681 15 C 0.178 3.822 16 C -0.266 4.266 17 C -0.065 4.065 18 C -0.250 4.250 19 C 0.103 3.897 20 C -0.443 4.443 21 H 0.091 0.909 22 C 0.083 3.917 23 N -0.811 5.811 24 Si 0.914 3.086 25 H -0.271 1.271 26 H -0.293 1.293 27 H -0.244 1.244 28 C -0.195 4.195 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.394 0.606 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.284 0.716 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.677 5.646 -3.867 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.159 4.159 4 C 0.028 3.972 5 H 0.105 0.895 6 C -0.165 4.165 7 C -0.168 4.168 8 C 0.052 3.948 9 H 0.117 0.883 10 C -0.160 4.160 11 N -0.374 5.374 12 C 0.428 3.572 13 O -0.437 6.437 14 N -0.327 5.327 15 C 0.085 3.915 16 C -0.287 4.287 17 C -0.084 4.084 18 C -0.270 4.270 19 C 0.100 3.900 20 C -0.472 4.472 21 H 0.109 0.891 22 C -0.135 4.135 23 N -0.436 5.436 24 Si 0.740 3.260 25 H -0.197 1.197 26 H -0.221 1.221 27 H -0.167 1.167 28 C -0.217 4.217 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.228 0.772 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.859 4.761 -3.472 22.640 hybrid contribution 0.165 0.991 -0.677 1.211 sum -21.694 5.752 -4.149 22.824 Atomic orbital electron populations 1.22164 0.95086 1.01539 1.01860 1.20612 0.95336 0.94861 0.98847 1.21762 1.01364 0.96284 0.96480 1.21935 0.90085 0.92339 0.92889 0.89450 1.22514 0.97777 0.97636 0.98610 1.22561 0.98034 0.95929 1.00279 1.21747 0.88272 0.89205 0.95551 0.88340 1.21724 1.01378 0.97635 0.95222 1.48156 1.03543 1.20637 1.65091 1.15333 0.79420 0.83270 0.79209 1.90985 1.65589 1.37490 1.49605 1.42544 1.08333 1.21503 1.60312 1.17321 0.79533 0.94888 0.99743 1.20020 0.95362 0.94617 1.18707 1.20341 0.92959 0.96879 0.98171 1.21025 0.98532 0.93714 1.13717 1.17626 0.91829 0.92314 0.88262 1.19499 0.93179 0.96049 1.38447 0.89095 1.26161 0.95885 0.97442 0.93991 1.69706 1.04615 1.33688 1.35572 0.86285 0.78930 0.81026 0.79717 1.19717 1.22070 1.16745 1.21218 0.93240 0.97321 1.09908 0.92247 0.92831 0.92810 0.92332 0.91992 0.91031 0.91310 0.90208 0.90143 0.91243 0.91748 0.91048 0.77237 0.88854 0.88553 0.88242 0.90591 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.61 37.31 0.32 -0.63 16 2 C -0.08 -0.67 2.38 -91.92 -0.22 -0.88 16 3 C -0.12 -1.04 4.94 -27.67 -0.14 -1.17 16 4 C 0.13 1.28 3.75 -66.51 -0.25 1.03 16 5 H 0.09 0.78 6.98 -51.50 -0.36 0.42 16 6 C -0.13 -0.99 5.92 -25.29 -0.15 -1.14 16 7 C -0.13 -1.10 5.92 -25.29 -0.15 -1.25 16 8 C 0.16 1.83 3.88 -66.52 -0.26 1.57 16 9 H 0.10 1.34 7.97 -51.50 -0.41 0.93 16 10 C -0.12 -1.22 4.94 -27.69 -0.14 -1.35 16 11 N -0.64 -8.77 2.76 -160.01 -0.44 -9.21 16 12 C 0.72 13.68 8.43 -86.99 -0.73 12.94 16 13 O -0.56 -13.30 14.09 5.29 0.07 -13.23 16 14 N -0.68 -12.37 5.31 -14.29 -0.08 -12.44 16 15 C 0.18 3.98 6.29 -83.76 -0.53 3.46 16 16 C -0.27 -5.61 9.97 -39.10 -0.39 -5.99 16 17 C -0.06 -1.43 10.02 -39.69 -0.40 -1.83 16 18 C -0.25 -6.30 7.15 -38.84 -0.28 -6.58 16 19 C 0.10 2.81 5.10 -106.85 -0.54 2.27 16 20 C -0.44 -12.83 9.57 -37.74 -0.36 -13.19 16 21 H 0.09 2.81 8.06 -52.48 -0.42 2.38 16 22 C 0.08 2.29 5.41 -17.34 -0.09 2.20 16 23 N -0.81 -22.60 13.93 55.55 0.77 -21.82 16 24 Si 0.91 21.59 24.50 -169.99 -4.17 17.42 16 25 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.24 -5.88 6.84 56.52 0.39 -5.49 16 28 C -0.20 -5.07 8.44 -38.68 -0.33 -5.39 16 29 H 0.06 0.35 5.01 -51.93 -0.26 0.09 16 30 H 0.05 0.31 7.91 -51.93 -0.41 -0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.53 8.30 -50.38 -0.42 0.11 16 33 H 0.06 0.61 8.23 -51.31 -0.42 0.19 16 34 H 0.07 0.47 7.67 -51.31 -0.39 0.08 16 35 H 0.07 0.54 8.16 -51.78 -0.42 0.11 16 36 H 0.08 0.48 6.82 -52.11 -0.36 0.12 16 37 H 0.08 0.54 6.57 -52.11 -0.34 0.19 16 38 H 0.07 0.61 8.16 -51.78 -0.42 0.19 16 39 H 0.06 0.79 8.23 -51.31 -0.42 0.36 16 40 H 0.07 0.58 7.82 -51.31 -0.40 0.18 16 41 H 0.39 5.64 7.29 -40.82 -0.30 5.34 16 42 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.10 2.48 4.71 -52.49 -0.25 2.23 16 45 H 0.28 7.13 8.30 -40.82 -0.34 6.79 16 46 H 0.12 3.29 6.21 -52.49 -0.33 2.96 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -32.37 348.62 -9.99 -42.35 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.78 Total: 7.62 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -4.63 Total: -15.95 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.26 Total: -43.47 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.17 Total: 17.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.37 -9.99 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596925149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.512 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds