Wall clock time and date at job start Tue Mar 31 2020 11:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53300 * 1 3 3 C 1.51561 * 110.58135 * 2 1 4 4 C 1.52595 * 114.04108 * 99.79076 * 3 2 1 5 5 H 1.09757 * 111.80982 * 173.96225 * 4 3 2 6 6 C 1.54438 * 109.43567 * 297.72877 * 4 3 2 7 7 C 1.54307 * 104.47409 * 90.06676 * 6 4 3 8 8 C 1.54442 * 104.48048 * 359.97438 * 7 6 4 9 9 H 1.09750 * 111.28619 * 145.86773 * 8 7 6 10 10 C 1.51564 * 110.58659 * 130.00017 * 2 1 3 11 11 N 1.48096 * 108.10496 * 51.15562 * 4 3 2 12 12 C 1.34699 * 128.58795 * 105.64962 * 11 4 3 13 13 O 1.21583 * 120.00217 * 179.85436 * 12 11 4 14 14 N 1.34777 * 120.00029 * 359.85533 * 12 11 4 15 15 C 1.39955 * 119.99983 * 174.95449 * 14 12 11 16 16 C 1.39287 * 119.94668 * 215.04985 * 15 14 12 17 17 C 1.38498 * 120.42596 * 180.02562 * 16 15 14 18 18 C 1.37681 * 120.32253 * 0.02562 * 17 16 15 19 19 C 1.40735 * 119.88310 * 359.97438 * 18 17 16 20 20 C 1.41406 * 120.21235 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00094 * 150.09299 * 20 19 18 22 22 C 1.39935 * 120.00080 * 329.82793 * 20 19 18 23 23 N 1.30827 * 120.00339 * 162.51360 * 22 20 19 24 24 Si 1.86802 * 119.99613 * 342.51685 * 22 20 19 25 25 H 1.48506 * 109.47267 * 95.22747 * 24 22 20 26 26 H 1.48496 * 109.47339 * 215.22880 * 24 22 20 27 27 H 1.48502 * 109.47137 * 335.23118 * 24 22 20 28 28 C 1.38238 * 119.94422 * 35.33903 * 15 14 12 29 29 H 1.08996 * 109.47048 * 289.99694 * 1 2 3 30 30 H 1.08996 * 109.47713 * 50.00048 * 1 2 3 31 31 H 1.09004 * 109.46904 * 169.99883 * 1 2 3 32 32 H 1.11679 * 105.59716 * 244.99831 * 2 1 3 33 33 H 1.10082 * 109.11193 * 221.74244 * 3 2 1 34 34 H 1.10092 * 109.20003 * 337.75638 * 3 2 1 35 35 H 1.09262 * 110.17035 * 208.22021 * 6 4 3 36 36 H 1.08679 * 111.07447 * 330.32107 * 6 4 3 37 37 H 1.08684 * 111.00424 * 240.19785 * 7 6 4 38 38 H 1.09263 * 110.04664 * 118.23930 * 7 6 4 39 39 H 1.10080 * 109.11484 * 138.24112 * 10 2 1 40 40 H 1.10095 * 109.19141 * 22.23942 * 10 2 1 41 41 H 0.96998 * 119.99893 * 354.95947 * 14 12 11 42 42 H 1.07997 * 119.78802 * 0.02889 * 16 15 14 43 43 H 1.08002 * 119.83314 * 180.02562 * 17 16 15 44 44 H 1.07997 * 120.05450 * 179.97438 * 18 17 16 45 45 H 0.97002 * 120.00127 * 179.97438 * 23 22 20 46 46 H 1.07994 * 120.16625 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5330 0.0000 0.0000 3 6 2.0658 1.4189 0.0000 4 6 2.5062 1.9175 1.3733 5 1 2.9824 2.9047 1.3152 6 6 1.2916 1.9362 2.3270 7 6 1.2918 0.5377 2.9792 8 6 2.5061 -0.1810 2.3513 9 1 2.9825 -0.8600 3.0700 10 6 2.0659 -0.9120 1.0869 11 7 3.4242 0.9118 1.9555 12 6 4.7626 0.9761 2.0930 13 8 5.3666 0.0513 2.6012 14 7 5.4323 2.0654 1.6673 15 6 6.8069 2.1790 1.9047 16 6 7.3662 3.4270 2.1686 17 6 8.7253 3.5509 2.4044 18 6 9.5391 2.4406 2.3800 19 6 8.9880 1.1730 2.1147 20 6 9.8173 0.0280 2.0885 21 1 9.4164 -0.9356 2.3665 22 6 11.1558 0.1423 1.6970 23 7 12.0062 -0.8082 1.9887 24 14 11.7285 1.6521 0.7579 25 1 12.2966 2.6409 1.7092 26 1 12.7685 1.2580 -0.2262 27 1 10.5758 2.2578 0.0440 28 6 7.6083 1.0531 1.8710 29 1 -0.3633 0.3514 0.9657 30 1 -0.3634 0.6605 -0.7872 31 1 -0.3633 -1.0121 -0.1785 32 1 1.8333 -0.4546 -0.9749 33 1 2.9191 1.4835 -0.6925 34 1 1.2922 2.0961 -0.3936 35 1 1.4245 2.7057 3.0912 36 1 0.3685 2.1111 1.7808 37 1 0.3687 0.0066 2.7624 38 1 1.4249 0.6285 4.0599 39 1 2.9190 -1.4842 0.6911 40 1 1.2922 -1.6488 1.3527 41 1 4.9616 2.7708 1.1963 42 1 6.7360 4.3038 2.1895 43 1 9.1488 4.5232 2.6085 44 1 10.5984 2.5422 2.5641 45 1 12.9340 -0.7291 1.7170 46 1 7.1763 0.0855 1.6623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596925149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:49 Heat of formation + Delta-G solvation = -27.092707 kcal Electronic energy + Delta-G solvation = -26593.200721 eV Core-core repulsion = 23060.136313 eV Total energy + Delta-G solvation = -3533.064407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.13935 -40.55880 -38.96728 -36.20515 -35.23617 -34.92410 -32.67970 -32.37720 -32.13816 -30.08785 -28.36827 -27.14523 -25.39029 -24.60478 -23.15891 -22.69609 -21.77435 -21.44670 -20.07100 -19.49955 -18.45390 -17.73291 -17.20446 -17.04524 -16.47412 -16.45433 -16.03412 -15.37129 -14.95410 -14.86688 -14.57426 -14.56858 -14.39693 -14.35057 -14.04916 -13.83436 -13.60763 -13.43428 -13.28016 -12.96230 -12.86026 -12.55085 -12.51442 -12.39586 -12.08333 -11.78081 -11.68635 -11.45049 -11.38136 -11.26542 -11.21014 -11.13042 -11.06581 -10.77830 -9.73121 -9.53150 -8.90515 -8.81112 -6.54236 0.70957 0.81142 1.25623 1.42268 1.47680 1.51102 2.06581 2.15219 2.61466 2.90808 3.48105 3.53375 3.58948 3.76892 3.99385 4.02649 4.15101 4.25977 4.27628 4.34407 4.39608 4.48773 4.54678 4.63638 4.78773 4.80811 4.84449 4.88237 4.95477 5.00875 5.02554 5.04831 5.06778 5.08176 5.19206 5.26165 5.32983 5.38008 5.39520 5.48394 5.53193 5.64142 5.73953 5.80797 5.92863 6.13547 6.26249 6.39839 6.75830 6.78967 6.95192 7.53319 8.20112 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.003302 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.704345 B = 8478.802384 C = 8867.008483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 C -0.120 4.120 4 C 0.123 3.877 5 H 0.102 0.898 6 C -0.118 4.118 7 C -0.120 4.120 8 C 0.143 3.857 9 H 0.063 0.937 10 C -0.116 4.116 11 N -0.632 5.632 12 C 0.716 3.284 13 O -0.624 6.624 14 N -0.668 5.668 15 C 0.184 3.816 16 C -0.238 4.238 17 C -0.061 4.061 18 C -0.261 4.261 19 C 0.084 3.916 20 C -0.492 4.492 21 H 0.037 0.963 22 C 0.043 3.957 23 N -0.856 5.856 24 Si 0.977 3.023 25 H -0.249 1.249 26 H -0.277 1.277 27 H -0.250 1.250 28 C -0.225 4.225 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.025 0.975 40 H 0.093 0.907 41 H 0.416 0.584 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.102 0.898 45 H 0.294 0.706 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.058 10.699 -4.817 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 C -0.158 4.158 4 C 0.021 3.979 5 H 0.120 0.880 6 C -0.156 4.156 7 C -0.158 4.158 8 C 0.040 3.960 9 H 0.081 0.919 10 C -0.155 4.155 11 N -0.369 5.369 12 C 0.419 3.581 13 O -0.504 6.504 14 N -0.316 5.316 15 C 0.090 3.910 16 C -0.259 4.259 17 C -0.079 4.079 18 C -0.281 4.281 19 C 0.081 3.919 20 C -0.522 4.522 21 H 0.055 0.945 22 C -0.170 4.170 23 N -0.483 5.483 24 Si 0.799 3.201 25 H -0.173 1.173 26 H -0.203 1.203 27 H -0.174 1.174 28 C -0.247 4.247 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.112 0.888 41 H 0.255 0.745 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.334 9.842 -4.441 27.539 hybrid contribution 0.932 -0.570 -0.338 1.143 sum -24.402 9.273 -4.778 26.538 Atomic orbital electron populations 1.22109 0.92463 1.02250 1.03118 1.20617 0.97410 0.94452 0.97202 1.21793 1.01794 0.96826 0.95368 1.22373 0.90018 0.91727 0.93821 0.88023 1.22542 0.97883 0.96798 0.98375 1.22539 0.97018 0.96489 0.99780 1.21995 0.89064 0.88988 0.96000 0.91852 1.21717 1.00617 0.98169 0.94959 1.48210 1.02221 1.22501 1.63935 1.15597 0.81000 0.82558 0.78993 1.90959 1.67573 1.39595 1.52236 1.42291 1.06847 1.22117 1.60368 1.17444 0.81114 0.94417 0.98075 1.20598 0.95701 0.95192 1.14401 1.20874 0.93063 0.97812 0.96187 1.21164 0.99301 0.93586 1.14042 1.17725 0.92138 0.92958 0.89064 1.19423 0.95113 0.94919 1.42726 0.94471 1.26981 0.95134 1.00765 0.94156 1.69739 1.05419 1.35832 1.37321 0.85333 0.78464 0.77522 0.78775 1.17340 1.20318 1.17379 1.21114 0.93711 0.97547 1.12345 0.90919 0.91444 0.92618 0.93419 0.93789 0.87528 0.90712 0.86967 0.87392 0.91702 0.95566 0.88843 0.74547 0.83727 0.83759 0.88033 0.89523 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.61 72.08 0.62 -0.61 16 2 C -0.08 -1.18 2.38 -11.64 -0.03 -1.20 16 3 C -0.12 -1.69 4.94 29.99 0.15 -1.54 16 4 C 0.12 2.01 3.75 45.04 0.17 2.18 16 5 H 0.10 1.39 6.98 -1.98 -0.01 1.37 16 6 C -0.12 -1.30 5.92 31.53 0.19 -1.12 16 7 C -0.12 -1.72 5.92 31.53 0.19 -1.53 16 8 C 0.14 3.39 3.88 45.02 0.17 3.56 16 9 H 0.06 1.91 7.97 -1.99 -0.02 1.90 16 10 C -0.12 -2.35 4.94 29.97 0.15 -2.20 16 11 N -0.63 -17.36 2.76 -778.47 -2.15 -19.51 16 12 C 0.72 27.97 8.43 179.08 1.51 29.48 16 13 O -0.62 -32.18 14.09 -3.98 -0.06 -32.24 16 14 N -0.67 -23.68 5.31 -317.39 -1.69 -25.36 16 15 C 0.18 8.11 6.29 38.10 0.24 8.35 16 16 C -0.24 -9.02 9.97 22.58 0.23 -8.79 16 17 C -0.06 -2.45 10.02 22.20 0.22 -2.23 16 18 C -0.26 -12.94 7.15 22.75 0.16 -12.78 16 19 C 0.08 4.82 5.10 -21.31 -0.11 4.71 16 20 C -0.49 -31.19 9.57 23.46 0.22 -30.97 16 21 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 22 C 0.04 2.50 5.41 85.25 0.46 2.96 16 23 N -0.86 -50.75 13.93 21.82 0.30 -50.44 16 24 Si 0.98 45.07 24.50 68.60 1.68 46.75 16 25 H -0.25 -10.50 6.71 99.48 0.67 -9.83 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.25 -11.65 6.84 99.48 0.68 -10.97 16 28 C -0.23 -12.39 8.44 22.85 0.19 -12.20 16 29 H 0.07 0.45 5.01 -2.39 -0.01 0.44 16 30 H 0.07 0.44 7.91 -2.39 -0.02 0.43 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.83 8.30 -0.93 -0.01 0.82 16 33 H 0.04 0.78 8.23 -1.81 -0.01 0.77 16 34 H 0.11 0.84 7.67 -1.80 -0.01 0.83 16 35 H 0.07 0.81 8.16 -2.25 -0.02 0.79 16 36 H 0.11 0.61 6.82 -2.56 -0.02 0.59 16 37 H 0.11 0.99 6.57 -2.55 -0.02 0.97 16 38 H 0.06 1.02 8.16 -2.25 -0.02 1.00 16 39 H 0.03 0.70 8.23 -1.81 -0.01 0.69 16 40 H 0.09 1.44 7.82 -1.80 -0.01 1.43 16 41 H 0.42 10.70 7.29 -92.71 -0.68 10.02 16 42 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 44 H 0.10 4.94 4.71 -2.91 -0.01 4.92 16 45 H 0.29 15.47 8.30 -92.71 -0.77 14.70 16 46 H 0.09 5.21 6.21 -2.91 -0.02 5.20 16 Total: -1.00 -81.32 348.62 3.12 -78.20 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.29 Total: 26.54 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 4.74 Total: -23.93 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -3.53 Total: -95.32 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.06 Total: -32.24 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.68 Total: 46.75 kcal Total: -81.32 3.12 -78.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596925149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.106 kcal (2) G-P(sol) polarization free energy of solvation -81.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds