Wall clock time and date at job start Tue Mar 31 2020 11:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 120.00127 * 2 1 4 4 C 1.52997 * 109.47163 * 121.93690 * 3 2 1 5 5 N 1.46496 * 110.01700 * 299.26955 * 4 3 2 6 6 C 1.34782 * 120.00163 * 300.64933 * 5 4 3 7 7 O 1.21589 * 119.99623 * 354.42766 * 6 5 4 8 8 N 1.34773 * 120.00214 * 174.43620 * 6 5 4 9 9 C 1.39953 * 120.00029 * 184.56721 * 8 6 5 10 10 C 1.39292 * 119.94445 * 323.75526 * 9 8 6 11 11 C 1.38489 * 120.42778 * 179.76390 * 10 9 8 12 12 C 1.37678 * 120.32068 * 0.51597 * 11 10 9 13 13 C 1.40738 * 119.88475 * 359.74641 * 12 11 10 14 14 C 1.41413 * 120.21317 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00300 * 210.40019 * 14 13 12 16 16 C 1.39934 * 119.99340 * 30.40724 * 14 13 12 17 17 N 1.30826 * 120.00375 * 9.00891 * 16 14 13 18 18 Si 1.86805 * 119.99414 * 189.00875 * 16 14 13 19 19 H 1.48497 * 109.47270 * 90.00115 * 18 16 14 20 20 H 1.48503 * 109.46857 * 209.99522 * 18 16 14 21 21 H 1.48500 * 109.47304 * 329.99836 * 18 16 14 22 22 C 1.38237 * 119.95049 * 144.03589 * 9 8 6 23 23 C 1.54270 * 110.03300 * 177.82409 * 4 3 2 24 24 C 1.54890 * 104.19396 * 217.10632 * 23 4 3 25 25 C 1.54882 * 102.74987 * 37.94461 * 24 23 4 26 26 C 1.53880 * 110.03070 * 60.65788 * 4 3 2 27 27 H 1.08003 * 120.00025 * 359.72766 * 1 2 3 28 28 H 1.08002 * 120.00104 * 179.72271 * 1 2 3 29 29 H 1.08003 * 120.00025 * 180.27234 * 2 1 3 30 30 H 1.09002 * 109.47183 * 241.93990 * 3 2 1 31 31 H 1.09001 * 109.46736 * 1.93728 * 3 2 1 32 32 H 0.97003 * 120.00560 * 120.65342 * 5 4 3 33 33 H 0.96999 * 119.99783 * 4.55848 * 8 6 5 34 34 H 1.08001 * 119.78412 * 0.03163 * 10 9 8 35 35 H 1.07996 * 119.83954 * 180.23937 * 11 10 9 36 36 H 1.08001 * 120.05830 * 179.76489 * 12 11 10 37 37 H 0.97006 * 119.99657 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.15713 * 359.95882 * 22 9 8 39 39 H 1.08993 * 110.48299 * 335.78618 * 23 4 3 40 40 H 1.08998 * 110.47996 * 98.42893 * 23 4 3 41 41 H 1.09000 * 110.75557 * 279.62672 * 24 23 4 42 42 H 1.09002 * 110.75132 * 156.25867 * 24 23 4 43 43 H 1.09000 * 110.48711 * 203.37793 * 25 24 23 44 44 H 1.08999 * 110.48647 * 80.73377 * 25 24 23 45 45 H 1.09002 * 110.03039 * 238.56715 * 26 4 3 46 46 H 1.08995 * 110.03260 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9794 1.3653 1.2241 5 7 2.1826 1.2857 2.4509 6 6 1.2374 2.2131 2.7020 7 8 1.1143 3.1710 1.9632 8 7 0.4290 2.0790 3.7720 9 6 -0.6136 2.9892 3.9798 10 6 -0.4383 4.3328 3.6568 11 6 -1.4649 5.2412 3.8538 12 6 -2.6673 4.8275 4.3815 13 6 -2.8570 3.4741 4.7177 14 6 -4.0895 3.0415 5.2597 15 1 -4.1148 2.2081 5.9460 16 6 -5.2763 3.6933 4.9064 17 7 -5.2737 4.5825 3.9468 18 14 -6.8644 3.2937 5.8053 19 1 -7.0102 4.1944 6.9768 20 1 -8.0151 3.4865 4.8865 21 1 -6.8304 1.8827 6.2669 22 6 -1.8136 2.5546 4.5108 23 6 3.7978 2.6729 1.2081 24 6 5.1849 2.2596 1.7594 25 6 5.3955 0.8565 1.1381 26 6 3.9953 0.2103 1.1796 27 1 -0.5400 0.9353 0.0044 28 1 -0.5400 -0.9353 -0.0045 29 1 1.8500 -0.9353 -0.0044 30 1 2.6639 1.3781 -0.9069 31 1 1.3557 2.1333 0.0347 32 1 2.3352 0.5655 3.0826 33 1 0.5697 1.3514 4.3979 34 1 0.5028 4.6674 3.2460 35 1 -1.3200 6.2800 3.5963 36 1 -3.4637 5.5402 4.5369 37 1 -6.0965 5.0340 3.7017 38 1 -1.9491 1.5137 4.7652 39 1 3.8894 3.0531 0.1908 40 1 3.3369 3.4191 1.8553 41 1 5.1664 2.2013 2.8477 42 1 5.9566 2.9514 1.4217 43 1 6.1007 0.2773 1.7341 44 1 5.7452 0.9435 0.1094 45 1 3.8960 -0.4088 2.0712 46 1 3.8361 -0.3927 0.2857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596926547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:02 Heat of formation + Delta-G solvation = 2.042830 kcal Electronic energy + Delta-G solvation = -26250.838411 eV Core-core repulsion = 22719.037416 eV Total energy + Delta-G solvation = -3531.800996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51306 -38.59148 -36.96131 -34.55819 -34.19781 -33.35429 -32.63470 -29.73968 -29.28612 -28.90101 -27.65096 -25.16368 -24.86936 -22.09808 -21.27153 -20.87361 -20.13360 -19.62811 -18.95836 -17.78961 -17.46435 -16.39892 -15.68855 -15.35218 -15.09992 -14.88944 -14.61457 -14.44691 -13.99596 -13.53642 -13.44026 -13.14078 -12.99020 -12.81560 -12.37936 -12.15408 -11.79734 -11.74537 -11.57273 -11.25155 -11.17716 -11.13829 -11.07297 -10.89993 -10.79264 -10.67898 -10.57008 -10.41861 -10.09616 -9.46667 -9.36101 -9.29362 -9.20256 -8.81197 -8.72229 -7.35332 -6.82460 -6.58821 -4.31755 2.41615 2.85097 2.89530 3.08118 3.12085 3.14998 3.27409 3.78019 4.00307 4.33649 4.50985 4.59412 4.73775 4.77751 5.03218 5.20303 5.24187 5.28981 5.37860 5.45223 5.58174 5.69188 5.71139 5.72745 5.75518 5.92212 5.97416 6.07557 6.19632 6.25054 6.32620 6.35177 6.64895 6.75915 6.79717 6.85713 6.94136 6.99379 7.02602 7.11675 7.31875 7.45307 7.71201 7.89329 8.11287 8.15899 8.33502 8.52018 8.70395 8.96589 9.00564 9.13711 10.33533 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.003046 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.128476 B = 9189.139634 C = 9681.792463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.155 4.155 3 C -0.105 4.105 4 C 0.204 3.796 5 N -0.739 5.739 6 C 0.703 3.297 7 O -0.569 6.569 8 N -0.683 5.683 9 C 0.166 3.834 10 C -0.217 4.217 11 C -0.101 4.101 12 C -0.161 4.161 13 C 0.121 3.879 14 C -0.468 4.468 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.806 5.806 18 Si 0.910 3.090 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.239 4.239 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.125 4.125 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.390 0.610 33 H 0.393 0.607 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.278 0.722 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.451 -8.772 -4.589 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.173 4.173 3 C -0.143 4.143 4 C 0.117 3.883 5 N -0.395 5.395 6 C 0.404 3.596 7 O -0.445 6.445 8 N -0.329 5.329 9 C 0.074 3.926 10 C -0.238 4.238 11 C -0.120 4.120 12 C -0.180 4.180 13 C 0.118 3.882 14 C -0.499 4.499 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.432 5.432 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.261 4.261 23 C -0.167 4.167 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.163 4.163 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.223 0.777 33 H 0.227 0.773 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.174 -7.768 -5.451 18.752 hybrid contribution -0.785 -1.037 0.896 1.579 sum 15.389 -8.804 -4.555 18.305 Atomic orbital electron populations 1.23908 0.96130 1.01873 1.00051 1.22787 0.95860 0.97798 1.00883 1.21263 0.99486 0.97000 0.96600 1.20614 0.89299 0.94941 0.83461 1.45337 1.39431 1.30590 1.24191 1.15940 0.79212 0.82917 0.81531 1.90887 1.72502 1.31293 1.49809 1.42626 1.31932 1.32092 1.26238 1.17234 0.86209 0.88049 1.01104 1.20487 1.00102 0.91505 1.11751 1.20630 0.94120 0.97245 0.99996 1.21404 0.96040 0.96393 1.04210 1.17362 0.91349 0.90655 0.88792 1.19471 0.90797 1.14667 1.24975 0.90729 1.25839 1.00915 0.93683 0.93779 1.69803 1.29349 1.21129 1.22959 0.86290 0.80544 0.79828 0.79822 1.19465 1.20418 1.18832 1.20769 0.93633 0.98034 1.13639 1.22778 0.94292 0.97459 1.02144 1.22521 0.97328 0.96202 1.00265 1.22358 0.96236 0.96461 1.01031 1.22491 0.94113 0.97061 1.02616 0.88411 0.88965 0.88049 0.90798 0.88944 0.77660 0.77342 0.87510 0.89160 0.86302 0.91124 0.88870 0.91060 0.89666 0.91677 0.91679 0.91707 0.91481 0.91261 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 14.32 29.01 0.42 -2.07 16 2 C -0.16 -1.86 8.49 -36.02 -0.31 -2.16 16 3 C -0.11 -1.32 4.27 -27.88 -0.12 -1.44 16 4 C 0.20 2.29 0.60 -130.70 -0.08 2.21 16 5 N -0.74 -9.25 4.76 -51.37 -0.24 -9.49 16 6 C 0.70 12.16 7.61 -86.92 -0.66 11.50 16 7 O -0.57 -11.88 10.56 5.29 0.06 -11.82 16 8 N -0.68 -12.25 5.33 -14.27 -0.08 -12.33 16 9 C 0.17 3.79 6.27 -83.76 -0.52 3.26 16 10 C -0.22 -5.23 8.70 -39.10 -0.34 -5.57 16 11 C -0.10 -2.50 10.02 -39.69 -0.40 -2.89 16 12 C -0.16 -4.29 8.65 -38.84 -0.34 -4.62 16 13 C 0.12 3.27 5.54 -106.85 -0.59 2.67 16 14 C -0.47 -12.54 9.06 -37.74 -0.34 -12.89 16 15 H 0.07 1.91 7.86 -52.49 -0.41 1.50 16 16 C 0.07 1.89 5.27 -17.35 -0.09 1.80 16 17 N -0.81 -21.45 10.86 55.55 0.60 -20.85 16 18 Si 0.91 19.08 29.57 -169.99 -5.03 14.06 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.24 -5.83 9.71 -38.69 -0.38 -6.21 16 23 C -0.13 -1.52 5.58 -25.07 -0.14 -1.66 16 24 C -0.13 -1.16 6.91 -24.74 -0.17 -1.33 16 25 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 26 C -0.12 -1.03 5.76 -25.61 -0.15 -1.17 16 27 H 0.10 1.59 7.83 -52.48 -0.41 1.17 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.10 1.00 7.20 -52.48 -0.38 0.62 16 30 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.09 1.52 5.99 -51.93 -0.31 1.21 16 32 H 0.39 3.85 8.09 -40.82 -0.33 3.52 16 33 H 0.39 5.68 8.84 -40.82 -0.36 5.32 16 34 H 0.11 2.56 6.29 -52.49 -0.33 2.23 16 35 H 0.09 2.03 8.06 -52.49 -0.42 1.60 16 36 H 0.12 3.27 6.28 -52.49 -0.33 2.94 16 37 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 40 H 0.08 1.29 6.35 -51.93 -0.33 0.96 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.51 7.44 -51.93 -0.39 0.12 16 46 H 0.08 0.58 6.67 -51.93 -0.35 0.24 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -30.33 365.82 -10.40 -40.73 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -6.85 Total: 15.87 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -4.38 Total: -21.68 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.28 Total: -42.67 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.06 Total: -11.82 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.33 -10.40 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.772 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds