Wall clock time and date at job start Tue Mar 31 2020 11:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 120.00127 * 2 1 4 4 C 1.52997 * 109.47163 * 121.93690 * 3 2 1 5 5 N 1.46496 * 110.01700 * 299.26955 * 4 3 2 6 6 C 1.34782 * 120.00163 * 300.64933 * 5 4 3 7 7 O 1.21589 * 119.99623 * 354.42766 * 6 5 4 8 8 N 1.34773 * 120.00214 * 174.43620 * 6 5 4 9 9 C 1.39953 * 120.00029 * 184.56721 * 8 6 5 10 10 C 1.39292 * 119.94445 * 323.75526 * 9 8 6 11 11 C 1.38489 * 120.42778 * 179.76390 * 10 9 8 12 12 C 1.37678 * 120.32068 * 0.51597 * 11 10 9 13 13 C 1.40738 * 119.88475 * 359.74641 * 12 11 10 14 14 C 1.41413 * 120.21317 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00300 * 210.40019 * 14 13 12 16 16 C 1.39934 * 119.99340 * 30.40724 * 14 13 12 17 17 N 1.30826 * 120.00375 * 9.00891 * 16 14 13 18 18 Si 1.86805 * 119.99414 * 189.00875 * 16 14 13 19 19 H 1.48497 * 109.47270 * 90.00115 * 18 16 14 20 20 H 1.48503 * 109.46857 * 209.99522 * 18 16 14 21 21 H 1.48500 * 109.47304 * 329.99836 * 18 16 14 22 22 C 1.38237 * 119.95049 * 144.03589 * 9 8 6 23 23 C 1.54270 * 110.03300 * 177.82409 * 4 3 2 24 24 C 1.54890 * 104.19396 * 217.10632 * 23 4 3 25 25 C 1.54882 * 102.74987 * 37.94461 * 24 23 4 26 26 C 1.53880 * 110.03070 * 60.65788 * 4 3 2 27 27 H 1.08003 * 120.00025 * 359.72766 * 1 2 3 28 28 H 1.08002 * 120.00104 * 179.72271 * 1 2 3 29 29 H 1.08003 * 120.00025 * 180.27234 * 2 1 3 30 30 H 1.09002 * 109.47183 * 241.93990 * 3 2 1 31 31 H 1.09001 * 109.46736 * 1.93728 * 3 2 1 32 32 H 0.97003 * 120.00560 * 120.65342 * 5 4 3 33 33 H 0.96999 * 119.99783 * 4.55848 * 8 6 5 34 34 H 1.08001 * 119.78412 * 0.03163 * 10 9 8 35 35 H 1.07996 * 119.83954 * 180.23937 * 11 10 9 36 36 H 1.08001 * 120.05830 * 179.76489 * 12 11 10 37 37 H 0.97006 * 119.99657 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.15713 * 359.95882 * 22 9 8 39 39 H 1.08993 * 110.48299 * 335.78618 * 23 4 3 40 40 H 1.08998 * 110.47996 * 98.42893 * 23 4 3 41 41 H 1.09000 * 110.75557 * 279.62672 * 24 23 4 42 42 H 1.09002 * 110.75132 * 156.25867 * 24 23 4 43 43 H 1.09000 * 110.48711 * 203.37793 * 25 24 23 44 44 H 1.08999 * 110.48647 * 80.73377 * 25 24 23 45 45 H 1.09002 * 110.03039 * 238.56715 * 26 4 3 46 46 H 1.08995 * 110.03260 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9794 1.3653 1.2241 5 7 2.1826 1.2857 2.4509 6 6 1.2374 2.2131 2.7020 7 8 1.1143 3.1710 1.9632 8 7 0.4290 2.0790 3.7720 9 6 -0.6136 2.9892 3.9798 10 6 -0.4383 4.3328 3.6568 11 6 -1.4649 5.2412 3.8538 12 6 -2.6673 4.8275 4.3815 13 6 -2.8570 3.4741 4.7177 14 6 -4.0895 3.0415 5.2597 15 1 -4.1148 2.2081 5.9460 16 6 -5.2763 3.6933 4.9064 17 7 -5.2737 4.5825 3.9468 18 14 -6.8644 3.2937 5.8053 19 1 -7.0102 4.1944 6.9768 20 1 -8.0151 3.4865 4.8865 21 1 -6.8304 1.8827 6.2669 22 6 -1.8136 2.5546 4.5108 23 6 3.7978 2.6729 1.2081 24 6 5.1849 2.2596 1.7594 25 6 5.3955 0.8565 1.1381 26 6 3.9953 0.2103 1.1796 27 1 -0.5400 0.9353 0.0044 28 1 -0.5400 -0.9353 -0.0045 29 1 1.8500 -0.9353 -0.0044 30 1 2.6639 1.3781 -0.9069 31 1 1.3557 2.1333 0.0347 32 1 2.3352 0.5655 3.0826 33 1 0.5697 1.3514 4.3979 34 1 0.5028 4.6674 3.2460 35 1 -1.3200 6.2800 3.5963 36 1 -3.4637 5.5402 4.5369 37 1 -6.0965 5.0340 3.7017 38 1 -1.9491 1.5137 4.7652 39 1 3.8894 3.0531 0.1908 40 1 3.3369 3.4191 1.8553 41 1 5.1664 2.2013 2.8477 42 1 5.9566 2.9514 1.4217 43 1 6.1007 0.2773 1.7341 44 1 5.7452 0.9435 0.1094 45 1 3.8960 -0.4088 2.0712 46 1 3.8361 -0.3927 0.2857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596926547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:01 Heat of formation + Delta-G solvation = -14.913749 kcal Electronic energy + Delta-G solvation = -26251.573704 eV Core-core repulsion = 22719.037416 eV Total energy + Delta-G solvation = -3532.536288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.77131 -39.95840 -38.59801 -36.02291 -35.42459 -34.95704 -34.04936 -31.72487 -30.50088 -29.66844 -29.24164 -27.14153 -25.82696 -23.59343 -22.80320 -22.21398 -21.57147 -20.76931 -20.01510 -19.27930 -19.10879 -17.56747 -17.21468 -16.72667 -16.56522 -16.29737 -16.02321 -15.73782 -15.49922 -14.86467 -14.69105 -14.45714 -14.35393 -14.07288 -13.93527 -13.52071 -13.34416 -12.93321 -12.87890 -12.76652 -12.74355 -12.64028 -12.24896 -11.99047 -11.90881 -11.87222 -11.66540 -11.56980 -11.37944 -11.36691 -11.12551 -10.92261 -10.56397 -10.36099 -9.86764 -9.34662 -8.69454 -8.50473 -6.36048 0.99202 0.99782 1.38932 1.40103 1.52398 1.54790 1.76976 2.23883 2.30616 2.82577 3.32838 3.55118 3.72748 3.75158 3.94400 4.12512 4.27630 4.40079 4.42886 4.49916 4.58955 4.65023 4.70873 4.77127 4.85984 4.97155 4.98678 5.03902 5.06508 5.09743 5.14201 5.16410 5.18214 5.25007 5.29508 5.37116 5.41497 5.50969 5.70921 5.75459 5.80150 5.83379 5.97154 6.10305 6.12410 6.22434 6.42029 6.71476 6.96482 7.01835 7.19895 7.71517 8.42407 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.003046 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.128476 B = 9189.139634 C = 9681.792463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 C -0.108 4.108 4 C 0.200 3.800 5 N -0.717 5.717 6 C 0.700 3.300 7 O -0.606 6.606 8 N -0.677 5.677 9 C 0.181 3.819 10 C -0.228 4.228 11 C -0.103 4.103 12 C -0.187 4.187 13 C 0.095 3.905 14 C -0.499 4.499 15 H 0.079 0.921 16 C 0.029 3.971 17 N -0.840 5.840 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.256 1.256 22 C -0.248 4.248 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.118 4.118 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.139 0.861 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.407 0.593 33 H 0.413 0.587 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.285 0.715 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.255 -11.698 -4.433 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.151 4.151 3 C -0.146 4.146 4 C 0.114 3.886 5 N -0.374 5.374 6 C 0.401 3.599 7 O -0.485 6.485 8 N -0.325 5.325 9 C 0.086 3.914 10 C -0.249 4.249 11 C -0.122 4.122 12 C -0.208 4.208 13 C 0.092 3.908 14 C -0.529 4.529 15 H 0.097 0.903 16 C -0.184 4.184 17 N -0.467 5.467 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.180 1.180 22 C -0.270 4.270 23 C -0.170 4.170 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.155 4.155 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.157 0.843 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.244 0.756 33 H 0.249 0.751 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.042 -10.747 -5.287 21.656 hybrid contribution -1.204 -0.084 0.751 1.422 sum 16.838 -10.831 -4.536 20.528 Atomic orbital electron populations 1.23829 0.97013 1.00825 1.02923 1.23009 0.95183 0.98693 0.98188 1.21267 0.99136 0.95837 0.98356 1.20840 0.89373 0.96449 0.81960 1.45213 1.37697 1.29591 1.24899 1.16118 0.79682 0.83253 0.80818 1.90876 1.73572 1.33169 1.50873 1.42438 1.30987 1.31883 1.27149 1.17203 0.86880 0.88364 0.98918 1.20598 0.99901 0.92290 1.12149 1.20833 0.93740 0.98351 0.99312 1.21321 0.96414 0.96452 1.06570 1.17736 0.92489 0.91211 0.89364 1.19778 0.91602 1.15650 1.25907 0.90251 1.26782 1.04368 0.93085 0.94119 1.69892 1.30712 1.21964 1.24099 0.85128 0.75674 0.79910 0.78482 1.18659 1.19676 1.17997 1.20911 0.93665 0.98446 1.13955 1.22738 0.96030 0.96855 1.01382 1.22494 0.95527 0.97803 1.00070 1.22347 0.96150 0.94960 1.01839 1.22497 0.92993 0.95750 1.04305 0.92354 0.87344 0.84348 0.88720 0.93541 0.75578 0.75085 0.87574 0.87604 0.87935 0.90493 0.87359 0.91214 0.93611 0.92025 0.90981 0.89793 0.90474 0.89512 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.65 14.32 67.78 0.97 -4.68 16 2 C -0.13 -2.89 8.49 25.65 0.22 -2.67 16 3 C -0.11 -2.60 4.27 29.85 0.13 -2.47 16 4 C 0.20 4.11 0.60 4.33 0.00 4.11 16 5 N -0.72 -16.80 4.76 -434.69 -2.07 -18.86 16 6 C 0.70 24.25 7.61 179.05 1.36 25.61 16 7 O -0.61 -26.27 10.56 -4.00 -0.04 -26.31 16 8 N -0.68 -24.05 5.33 -317.32 -1.69 -25.75 16 9 C 0.18 8.36 6.27 38.10 0.24 8.60 16 10 C -0.23 -11.34 8.70 22.58 0.20 -11.14 16 11 C -0.10 -5.33 10.02 22.20 0.22 -5.11 16 12 C -0.19 -10.48 8.65 22.75 0.20 -10.28 16 13 C 0.09 5.28 5.54 -21.31 -0.12 5.16 16 14 C -0.50 -27.36 9.06 23.46 0.21 -27.14 16 15 H 0.08 4.12 7.86 -2.91 -0.02 4.09 16 16 C 0.03 1.52 5.27 85.25 0.45 1.97 16 17 N -0.84 -46.01 10.86 21.82 0.24 -45.77 16 18 Si 0.99 39.24 29.57 68.60 2.03 41.27 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 22 C -0.25 -12.32 9.71 22.85 0.22 -12.10 16 23 C -0.13 -3.03 5.58 31.67 0.18 -2.86 16 24 C -0.12 -1.95 6.91 31.88 0.22 -1.73 16 25 C -0.12 -1.24 6.83 31.67 0.22 -1.03 16 26 C -0.12 -1.40 5.76 31.32 0.18 -1.22 16 27 H 0.06 2.03 7.83 -2.91 -0.02 2.00 16 28 H 0.11 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.14 2.06 7.20 -2.91 -0.02 2.04 16 30 H 0.09 1.88 8.13 -2.39 -0.02 1.86 16 31 H 0.05 1.58 5.99 -2.39 -0.01 1.57 16 32 H 0.41 6.80 8.09 -92.71 -0.75 6.05 16 33 H 0.41 11.31 8.84 -92.71 -0.82 10.49 16 34 H 0.11 5.27 6.29 -2.91 -0.02 5.26 16 35 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.10 5.96 6.28 -2.91 -0.02 5.95 16 37 H 0.28 14.19 8.30 -92.70 -0.77 13.42 16 38 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 39 H 0.07 1.59 7.84 -2.39 -0.02 1.57 16 40 H 0.05 1.43 6.35 -2.39 -0.02 1.41 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 0.80 7.44 -2.39 -0.02 0.78 16 46 H 0.09 0.89 6.67 -2.39 -0.02 0.87 16 Total: -1.00 -70.38 365.82 2.99 -67.40 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: -0.57 Total: 45.01 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 5.09 Total: -36.98 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -3.52 Total: -90.39 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.04 Total: -26.31 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -70.38 2.99 -67.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.484 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds