Wall clock time and date at job start Tue Mar 31 2020 10:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38361 * 119.45832 * 2 1 4 4 C 1.38353 * 119.30149 * 179.97438 * 3 2 1 5 5 C 1.40030 * 118.28792 * 359.73304 * 4 3 2 6 6 C 1.47840 * 120.56039 * 180.28130 * 5 4 3 7 7 O 1.21543 * 120.00356 * 228.50324 * 6 5 4 8 8 N 1.34782 * 119.99584 * 48.50182 * 6 5 4 9 9 C 1.46924 * 120.63376 * 5.46431 * 8 6 5 10 10 C 1.53620 * 108.54312 * 126.36660 * 9 8 6 11 11 C 1.53038 * 109.24287 * 54.85674 * 10 9 8 12 12 C 1.53037 * 109.53681 * 298.51223 * 11 10 9 13 13 H 1.08997 * 109.49897 * 301.41069 * 12 11 10 14 14 C 1.50705 * 109.52433 * 181.33308 * 12 11 10 15 15 H 1.07997 * 119.99911 * 0.14219 * 14 12 11 16 16 C 1.37877 * 120.00351 * 180.14334 * 14 12 11 17 17 N 1.31518 * 119.99640 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00143 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46928 * 90.00152 * 18 16 14 20 20 H 1.48496 * 109.46896 * 210.00119 * 18 16 14 21 21 H 1.48495 * 109.47269 * 330.00253 * 18 16 14 22 22 C 1.46930 * 120.62821 * 185.74366 * 8 6 5 23 23 C 1.39519 * 118.88078 * 0.54838 * 5 4 3 24 24 C 1.50704 * 119.71462 * 179.71517 * 23 5 4 25 25 C 1.53001 * 117.49629 * 245.74871 * 24 23 5 26 26 C 1.53002 * 60.03201 * 252.52527 * 25 24 23 27 27 N 1.31690 * 120.56652 * 359.43415 * 23 5 4 28 28 H 1.09005 * 109.46950 * 269.97602 * 1 2 3 29 29 H 1.09000 * 109.46946 * 29.97475 * 1 2 3 30 30 H 1.09000 * 109.47164 * 149.98184 * 1 2 3 31 31 H 1.07997 * 120.34757 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.85651 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.58649 * 246.20338 * 9 8 6 34 34 H 1.09000 * 109.58671 * 6.62065 * 9 8 6 35 35 H 1.08996 * 109.63746 * 294.86318 * 10 9 8 36 36 H 1.09006 * 109.42940 * 174.72718 * 10 9 8 37 37 H 1.09004 * 109.46172 * 178.48592 * 11 10 9 38 38 H 1.09006 * 109.44499 * 58.52324 * 11 10 9 39 39 H 0.97001 * 119.99502 * 179.97438 * 17 16 14 40 40 H 1.09008 * 109.58442 * 353.37198 * 22 8 6 41 41 H 1.09002 * 109.58813 * 113.79689 * 22 8 6 42 42 H 1.08991 * 115.56072 * 31.43971 * 24 23 5 43 43 H 1.09000 * 117.49805 * 145.02148 * 25 24 23 44 44 H 1.09001 * 117.49423 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.50020 * 107.48221 * 26 25 24 46 46 H 1.08995 * 117.49477 * 252.47919 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0339 0.0068 6 6 5.7083 -0.0966 0.0139 7 8 6.2897 -0.8211 -0.7698 8 7 6.4102 0.6499 0.8896 9 6 5.7224 1.4385 1.9210 10 6 6.3103 1.0693 3.2913 11 6 7.8277 1.2653 3.2585 12 6 8.4409 0.3386 2.2062 13 1 8.1934 -0.6959 2.4440 14 6 9.9383 0.5082 2.1969 15 1 10.4070 1.2055 2.8755 16 6 10.7100 -0.2268 1.3221 17 7 10.1393 -1.0763 0.4961 18 14 12.5660 -0.0161 1.3102 19 1 13.1791 -0.9737 2.2654 20 1 13.0852 -0.2789 -0.0560 21 1 12.9092 1.3717 1.7117 22 6 7.8774 0.6952 0.8271 23 6 3.4717 -1.2042 0.0005 24 6 4.1628 -2.5434 0.0006 25 6 3.9972 -3.4239 -1.2396 26 6 3.2814 -3.7935 0.0611 27 7 2.1559 -1.1486 0.0001 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6443 2.1382 0.0004 32 1 4.1275 2.1265 0.0010 33 1 5.8733 2.5009 1.7297 34 1 4.6567 1.2101 1.9054 35 1 6.0829 0.0279 3.5189 36 1 5.8768 1.7125 4.0571 37 1 8.2456 1.0300 4.2374 38 1 8.0544 2.3013 3.0065 39 1 10.6822 -1.5931 -0.1196 40 1 8.2341 -0.0239 0.0895 41 1 8.2005 1.6983 0.5485 42 1 5.1216 -2.5778 0.5179 43 1 4.8471 -4.0375 -1.5383 44 1 3.3887 -3.0343 -2.0557 45 1 2.2021 -3.6468 0.1009 46 1 3.6602 -4.6505 0.6180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:03 Heat of formation + Delta-G solvation = 17.648625 kcal Electronic energy + Delta-G solvation = -26848.952546 eV Core-core repulsion = 23317.828269 eV Total energy + Delta-G solvation = -3531.124278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82042 -38.97223 -36.97517 -36.49769 -33.73214 -32.78995 -32.05825 -31.64467 -29.78314 -28.20995 -25.33779 -24.95559 -24.12671 -22.61211 -22.02709 -21.85567 -20.70412 -20.00244 -18.59475 -17.05402 -16.59546 -16.17952 -15.99274 -15.55408 -14.85898 -14.66927 -14.46627 -14.17021 -14.01126 -13.76699 -13.46691 -13.23793 -12.85332 -12.68062 -12.64009 -12.56446 -12.29707 -12.13879 -11.86519 -11.50071 -11.31758 -11.02891 -10.97614 -10.61171 -10.51920 -10.41534 -10.29626 -10.24062 -9.91945 -9.74675 -9.63841 -9.24383 -9.13843 -8.87695 -8.63317 -8.44198 -7.76836 -6.00592 -4.09608 0.83454 1.16845 3.16286 3.29897 3.37601 3.39621 3.53654 3.74139 4.05791 4.19234 4.41950 4.54036 4.62759 4.83075 4.95601 5.16117 5.22677 5.24415 5.29137 5.32224 5.34134 5.38954 5.40497 5.47635 5.62094 5.65889 5.79568 5.84704 5.93519 5.98334 6.03822 6.14209 6.15620 6.28577 6.33861 6.39154 6.56331 6.60434 6.65417 6.83112 6.95437 7.11809 7.24911 7.61991 7.85041 7.92882 7.98518 8.20818 8.37093 8.80181 8.94628 9.56126 11.04522 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.003997 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.201457 B = 7002.753921 C = 7931.907012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.140 3.860 3 C -0.187 4.187 4 C -0.042 4.042 5 C -0.168 4.168 6 C 0.552 3.448 7 O -0.518 6.518 8 N -0.599 5.599 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.879 5.879 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.113 3.887 23 C 0.213 3.787 24 C -0.112 4.112 25 C -0.147 4.147 26 C -0.163 4.163 27 N -0.485 5.485 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.264 0.736 40 H 0.124 0.876 41 H 0.043 0.957 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 3.482 0.279 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.207 4.207 4 C -0.068 4.068 5 C -0.173 4.173 6 C 0.337 3.663 7 O -0.394 6.394 8 N -0.331 5.331 9 C -0.019 4.019 10 C -0.171 4.171 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.007 4.007 23 C 0.075 3.925 24 C -0.131 4.131 25 C -0.184 4.184 26 C -0.201 4.201 27 N -0.195 5.195 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.142 0.858 41 H 0.061 0.939 42 H 0.143 0.857 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.123 0.877 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.560 2.202 -0.295 18.692 hybrid contribution 1.571 1.162 0.068 1.955 sum -16.988 3.363 -0.227 17.320 Atomic orbital electron populations 1.20723 0.88730 1.03440 1.03116 1.21377 0.96972 0.88208 0.93294 1.21824 0.94417 0.99318 1.05108 1.21751 0.94389 0.97394 0.93235 1.20935 0.95821 0.94408 1.06136 1.18021 0.85545 0.80803 0.81903 1.90820 1.70421 1.38356 1.39849 1.48459 1.09363 1.45156 1.30162 1.21877 0.96146 0.95203 0.88676 1.22014 0.98464 1.01288 0.95344 1.21630 0.92220 1.00408 1.00551 1.18959 0.94626 0.94844 0.89438 0.95283 1.21071 0.90751 1.23849 1.20361 0.92378 1.25051 0.98617 0.94908 0.95414 1.69888 1.35302 1.24779 1.21687 0.86599 0.85702 0.78437 0.77303 1.20684 1.21175 1.19928 1.22335 0.73111 1.01575 1.03669 1.20349 0.88117 0.93221 0.90834 1.20916 1.00183 0.86902 1.05109 1.22833 1.02694 1.01674 0.91233 1.22976 0.99349 0.97050 1.00680 1.67230 1.08921 1.29058 1.14287 0.90292 0.90680 0.90446 0.84480 0.84239 0.91978 0.91080 0.92150 0.92253 0.92978 0.93174 0.92640 0.85786 0.93858 0.85718 0.88126 0.89095 0.87687 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.16 36.01 0.37 -0.45 16 2 C 0.14 1.65 6.78 -82.51 -0.56 1.09 16 3 C -0.19 -2.04 9.72 -39.49 -0.38 -2.42 16 4 C -0.04 -0.55 7.69 -38.87 -0.30 -0.85 16 5 C -0.17 -2.80 4.83 -104.82 -0.51 -3.31 16 6 C 0.55 11.28 6.49 -12.33 -0.08 11.20 16 7 O -0.52 -12.60 15.12 5.33 0.08 -12.52 16 8 N -0.60 -11.97 2.97 -173.62 -0.51 -12.48 16 9 C 0.10 1.65 5.34 -3.49 -0.02 1.63 16 10 C -0.13 -2.17 6.10 -26.39 -0.16 -2.33 16 11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.31 16 12 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.52 -14.01 8.57 -34.44 -0.29 -14.30 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.88 -25.41 11.39 55.43 0.63 -24.78 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.11 2.70 5.41 -3.71 -0.02 2.68 16 23 C 0.21 3.48 6.49 -82.17 -0.53 2.95 16 24 C -0.11 -1.86 4.82 -91.73 -0.44 -2.30 16 25 C -0.15 -2.15 10.23 -26.73 -0.27 -2.42 16 26 C -0.16 -2.19 10.03 -26.69 -0.27 -2.46 16 27 N -0.49 -7.04 9.19 -5.42 -0.05 -7.09 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.14 1.61 7.40 -52.49 -0.39 1.22 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.99 5.13 -51.93 -0.27 0.73 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.12 3.47 5.11 -51.92 -0.27 3.20 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.12 2.36 7.20 -51.93 -0.37 1.98 16 43 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.10 1.36 7.54 -51.93 -0.39 0.97 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -31.27 367.11 -10.39 -41.66 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.14 Total: 4.75 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.91 Total: -11.19 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.07 Total: -44.35 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.27 -10.39 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.309 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds