Wall clock time and date at job start Tue Mar 31 2020 10:55:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.38361 * 119.45832 * 2 1
4 4 C 1.38353 * 119.30149 * 179.97438 * 3 2 1
5 5 C 1.40030 * 118.28792 * 359.73304 * 4 3 2
6 6 C 1.47840 * 120.56039 * 180.28130 * 5 4 3
7 7 O 1.21543 * 120.00356 * 228.50324 * 6 5 4
8 8 N 1.34782 * 119.99584 * 48.50182 * 6 5 4
9 9 C 1.46924 * 120.63376 * 5.46431 * 8 6 5
10 10 C 1.53620 * 108.54312 * 126.36660 * 9 8 6
11 11 C 1.53038 * 109.24287 * 54.85674 * 10 9 8
12 12 C 1.53037 * 109.53681 * 298.51223 * 11 10 9
13 13 H 1.08997 * 109.49897 * 301.41069 * 12 11 10
14 14 C 1.50705 * 109.52433 * 181.33308 * 12 11 10
15 15 H 1.07997 * 119.99911 * 0.14219 * 14 12 11
16 16 C 1.37877 * 120.00351 * 180.14334 * 14 12 11
17 17 N 1.31518 * 119.99640 * 359.97438 * 16 14 12
18 18 Si 1.86798 * 120.00143 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.46928 * 90.00152 * 18 16 14
20 20 H 1.48496 * 109.46896 * 210.00119 * 18 16 14
21 21 H 1.48495 * 109.47269 * 330.00253 * 18 16 14
22 22 C 1.46930 * 120.62821 * 185.74366 * 8 6 5
23 23 C 1.39519 * 118.88078 * 0.54838 * 5 4 3
24 24 C 1.50704 * 119.71462 * 179.71517 * 23 5 4
25 25 C 1.53001 * 117.49629 * 245.74871 * 24 23 5
26 26 C 1.53002 * 60.03201 * 252.52527 * 25 24 23
27 27 N 1.31690 * 120.56652 * 359.43415 * 23 5 4
28 28 H 1.09005 * 109.46950 * 269.97602 * 1 2 3
29 29 H 1.09000 * 109.46946 * 29.97475 * 1 2 3
30 30 H 1.09000 * 109.47164 * 149.98184 * 1 2 3
31 31 H 1.07997 * 120.34757 * 0.02562 * 3 2 1
32 32 H 1.07997 * 120.85651 * 180.02562 * 4 3 2
33 33 H 1.09003 * 109.58649 * 246.20338 * 9 8 6
34 34 H 1.09000 * 109.58671 * 6.62065 * 9 8 6
35 35 H 1.08996 * 109.63746 * 294.86318 * 10 9 8
36 36 H 1.09006 * 109.42940 * 174.72718 * 10 9 8
37 37 H 1.09004 * 109.46172 * 178.48592 * 11 10 9
38 38 H 1.09006 * 109.44499 * 58.52324 * 11 10 9
39 39 H 0.97001 * 119.99502 * 179.97438 * 17 16 14
40 40 H 1.09008 * 109.58442 * 353.37198 * 22 8 6
41 41 H 1.09002 * 109.58813 * 113.79689 * 22 8 6
42 42 H 1.08991 * 115.56072 * 31.43971 * 24 23 5
43 43 H 1.09000 * 117.49805 * 145.02148 * 25 24 23
44 44 H 1.09001 * 117.49423 * 0.02562 * 25 24 23
45 45 H 1.08998 * 117.50020 * 107.48221 * 26 25 24
46 46 H 1.08995 * 117.49477 * 252.47919 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1875 1.2047 0.0000
4 6 3.5710 1.2009 0.0005
5 6 4.2312 -0.0339 0.0068
6 6 5.7083 -0.0966 0.0139
7 8 6.2897 -0.8211 -0.7698
8 7 6.4102 0.6499 0.8896
9 6 5.7224 1.4385 1.9210
10 6 6.3103 1.0693 3.2913
11 6 7.8277 1.2653 3.2585
12 6 8.4409 0.3386 2.2062
13 1 8.1934 -0.6959 2.4440
14 6 9.9383 0.5082 2.1969
15 1 10.4070 1.2055 2.8755
16 6 10.7100 -0.2268 1.3221
17 7 10.1393 -1.0763 0.4961
18 14 12.5660 -0.0161 1.3102
19 1 13.1791 -0.9737 2.2654
20 1 13.0852 -0.2789 -0.0560
21 1 12.9092 1.3717 1.7117
22 6 7.8774 0.6952 0.8271
23 6 3.4717 -1.2042 0.0005
24 6 4.1628 -2.5434 0.0006
25 6 3.9972 -3.4239 -1.2396
26 6 3.2814 -3.7935 0.0611
27 7 2.1559 -1.1486 0.0001
28 1 -0.3633 -0.0004 1.0277
29 1 -0.3633 0.8902 -0.5134
30 1 -0.3633 -0.8898 -0.5141
31 1 1.6443 2.1382 0.0004
32 1 4.1275 2.1265 0.0010
33 1 5.8733 2.5009 1.7297
34 1 4.6567 1.2101 1.9054
35 1 6.0829 0.0279 3.5189
36 1 5.8768 1.7125 4.0571
37 1 8.2456 1.0300 4.2374
38 1 8.0544 2.3013 3.0065
39 1 10.6822 -1.5931 -0.1196
40 1 8.2341 -0.0239 0.0895
41 1 8.2005 1.6983 0.5485
42 1 5.1216 -2.5778 0.5179
43 1 4.8471 -4.0375 -1.5383
44 1 3.3887 -3.0343 -2.0557
45 1 2.2021 -3.6468 0.1009
46 1 3.6602 -4.6505 0.6180
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597903579.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:03
Heat of formation + Delta-G solvation = 17.648625 kcal
Electronic energy + Delta-G solvation = -26848.952546 eV
Core-core repulsion = 23317.828269 eV
Total energy + Delta-G solvation = -3531.124278 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.82042 -38.97223 -36.97517 -36.49769 -33.73214 -32.78995 -32.05825 -31.64467
-29.78314 -28.20995 -25.33779 -24.95559 -24.12671 -22.61211 -22.02709 -21.85567
-20.70412 -20.00244 -18.59475 -17.05402 -16.59546 -16.17952 -15.99274 -15.55408
-14.85898 -14.66927 -14.46627 -14.17021 -14.01126 -13.76699 -13.46691 -13.23793
-12.85332 -12.68062 -12.64009 -12.56446 -12.29707 -12.13879 -11.86519 -11.50071
-11.31758 -11.02891 -10.97614 -10.61171 -10.51920 -10.41534 -10.29626 -10.24062
-9.91945 -9.74675 -9.63841 -9.24383 -9.13843 -8.87695 -8.63317 -8.44198
-7.76836 -6.00592 -4.09608 0.83454 1.16845 3.16286 3.29897 3.37601
3.39621 3.53654 3.74139 4.05791 4.19234 4.41950 4.54036 4.62759
4.83075 4.95601 5.16117 5.22677 5.24415 5.29137 5.32224 5.34134
5.38954 5.40497 5.47635 5.62094 5.65889 5.79568 5.84704 5.93519
5.98334 6.03822 6.14209 6.15620 6.28577 6.33861 6.39154 6.56331
6.60434 6.65417 6.83112 6.95437 7.11809 7.24911 7.61991 7.85041
7.92882 7.98518 8.20818 8.37093 8.80181 8.94628 9.56126 11.04522
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.018011 B = 0.003997 C = 0.003529
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1554.201457 B = 7002.753921 C = 7931.907012
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.140 3.860
3 C -0.187 4.187
4 C -0.042 4.042
5 C -0.168 4.168
6 C 0.552 3.448
7 O -0.518 6.518
8 N -0.599 5.599
9 C 0.105 3.895
10 C -0.133 4.133
11 C -0.110 4.110
12 C 0.040 3.960
13 H 0.029 0.971
14 C -0.522 4.522
15 H 0.058 0.942
16 C 0.063 3.937
17 N -0.879 5.879
18 Si 0.892 3.108
19 H -0.281 1.281
20 H -0.286 1.286
21 H -0.274 1.274
22 C 0.113 3.887
23 C 0.213 3.787
24 C -0.112 4.112
25 C -0.147 4.147
26 C -0.163 4.163
27 N -0.485 5.485
28 H 0.078 0.922
29 H 0.074 0.926
30 H 0.077 0.923
31 H 0.137 0.863
32 H 0.140 0.860
33 H 0.062 0.938
34 H 0.071 0.929
35 H 0.060 0.940
36 H 0.059 0.941
37 H 0.051 0.949
38 H 0.049 0.951
39 H 0.264 0.736
40 H 0.124 0.876
41 H 0.043 0.957
42 H 0.125 0.875
43 H 0.100 0.900
44 H 0.091 0.909
45 H 0.105 0.895
46 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.468 3.482 0.279 18.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.001 3.999
3 C -0.207 4.207
4 C -0.068 4.068
5 C -0.173 4.173
6 C 0.337 3.663
7 O -0.394 6.394
8 N -0.331 5.331
9 C -0.019 4.019
10 C -0.171 4.171
11 C -0.148 4.148
12 C 0.021 3.979
13 H 0.047 0.953
14 C -0.560 4.560
15 H 0.076 0.924
16 C -0.140 4.140
17 N -0.517 5.517
18 Si 0.720 3.280
19 H -0.207 1.207
20 H -0.212 1.212
21 H -0.199 1.199
22 C -0.007 4.007
23 C 0.075 3.925
24 C -0.131 4.131
25 C -0.184 4.184
26 C -0.201 4.201
27 N -0.195 5.195
28 H 0.097 0.903
29 H 0.093 0.907
30 H 0.096 0.904
31 H 0.155 0.845
32 H 0.158 0.842
33 H 0.080 0.920
34 H 0.089 0.911
35 H 0.078 0.922
36 H 0.077 0.923
37 H 0.070 0.930
38 H 0.068 0.932
39 H 0.074 0.926
40 H 0.142 0.858
41 H 0.061 0.939
42 H 0.143 0.857
43 H 0.119 0.881
44 H 0.109 0.891
45 H 0.123 0.877
46 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -18.560 2.202 -0.295 18.692
hybrid contribution 1.571 1.162 0.068 1.955
sum -16.988 3.363 -0.227 17.320
Atomic orbital electron populations
1.20723 0.88730 1.03440 1.03116 1.21377 0.96972 0.88208 0.93294
1.21824 0.94417 0.99318 1.05108 1.21751 0.94389 0.97394 0.93235
1.20935 0.95821 0.94408 1.06136 1.18021 0.85545 0.80803 0.81903
1.90820 1.70421 1.38356 1.39849 1.48459 1.09363 1.45156 1.30162
1.21877 0.96146 0.95203 0.88676 1.22014 0.98464 1.01288 0.95344
1.21630 0.92220 1.00408 1.00551 1.18959 0.94626 0.94844 0.89438
0.95283 1.21071 0.90751 1.23849 1.20361 0.92378 1.25051 0.98617
0.94908 0.95414 1.69888 1.35302 1.24779 1.21687 0.86599 0.85702
0.78437 0.77303 1.20684 1.21175 1.19928 1.22335 0.73111 1.01575
1.03669 1.20349 0.88117 0.93221 0.90834 1.20916 1.00183 0.86902
1.05109 1.22833 1.02694 1.01674 0.91233 1.22976 0.99349 0.97050
1.00680 1.67230 1.08921 1.29058 1.14287 0.90292 0.90680 0.90446
0.84480 0.84239 0.91978 0.91080 0.92150 0.92253 0.92978 0.93174
0.92640 0.85786 0.93858 0.85718 0.88126 0.89095 0.87687 0.88729
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.81 10.16 36.01 0.37 -0.45 16
2 C 0.14 1.65 6.78 -82.51 -0.56 1.09 16
3 C -0.19 -2.04 9.72 -39.49 -0.38 -2.42 16
4 C -0.04 -0.55 7.69 -38.87 -0.30 -0.85 16
5 C -0.17 -2.80 4.83 -104.82 -0.51 -3.31 16
6 C 0.55 11.28 6.49 -12.33 -0.08 11.20 16
7 O -0.52 -12.60 15.12 5.33 0.08 -12.52 16
8 N -0.60 -11.97 2.97 -173.62 -0.51 -12.48 16
9 C 0.10 1.65 5.34 -3.49 -0.02 1.63 16
10 C -0.13 -2.17 6.10 -26.39 -0.16 -2.33 16
11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.31 16
12 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16
13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16
14 C -0.52 -14.01 8.57 -34.44 -0.29 -14.30 16
15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16
16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16
17 N -0.88 -25.41 11.39 55.43 0.63 -24.78 16
18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16
19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
22 C 0.11 2.70 5.41 -3.71 -0.02 2.68 16
23 C 0.21 3.48 6.49 -82.17 -0.53 2.95 16
24 C -0.11 -1.86 4.82 -91.73 -0.44 -2.30 16
25 C -0.15 -2.15 10.23 -26.73 -0.27 -2.42 16
26 C -0.16 -2.19 10.03 -26.69 -0.27 -2.46 16
27 N -0.49 -7.04 9.19 -5.42 -0.05 -7.09 16
28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16
30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16
32 H 0.14 1.61 7.40 -52.49 -0.39 1.22 16
33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
34 H 0.07 0.99 5.13 -51.93 -0.27 0.73 16
35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
40 H 0.12 3.47 5.11 -51.92 -0.27 3.20 16
41 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16
42 H 0.12 2.36 7.20 -51.93 -0.37 1.98 16
43 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16
44 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16
45 H 0.10 1.36 7.54 -51.93 -0.39 0.97 16
46 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16
LS Contribution 367.11 15.07 5.53 5.53
Total: -1.00 -31.27 367.11 -10.39 -41.66
By element:
Atomic # 1 Polarization: 11.90 SS G_CDS: -7.14 Total: 4.75 kcal
Atomic # 6 Polarization: -7.27 SS G_CDS: -3.91 Total: -11.19 kcal
Atomic # 7 Polarization: -44.42 SS G_CDS: 0.07 Total: -44.35 kcal
Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -31.27 -10.39 -41.66 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597903579.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.309 kcal
(2) G-P(sol) polarization free energy of solvation -31.266 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.043 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.649 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds