Wall clock time and date at job start Tue Mar 31 2020 10:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38361 * 119.45832 * 2 1 4 4 C 1.38353 * 119.30149 * 179.97438 * 3 2 1 5 5 C 1.40030 * 118.28792 * 359.73304 * 4 3 2 6 6 C 1.47840 * 120.56039 * 180.28130 * 5 4 3 7 7 O 1.21543 * 120.00356 * 228.50324 * 6 5 4 8 8 N 1.34782 * 119.99584 * 48.50182 * 6 5 4 9 9 C 1.46924 * 120.63376 * 5.46431 * 8 6 5 10 10 C 1.53620 * 108.54312 * 126.36660 * 9 8 6 11 11 C 1.53038 * 109.24287 * 54.85674 * 10 9 8 12 12 C 1.53037 * 109.53681 * 298.51223 * 11 10 9 13 13 H 1.08997 * 109.49897 * 301.41069 * 12 11 10 14 14 C 1.50705 * 109.52433 * 181.33308 * 12 11 10 15 15 H 1.07997 * 119.99911 * 0.14219 * 14 12 11 16 16 C 1.37877 * 120.00351 * 180.14334 * 14 12 11 17 17 N 1.31518 * 119.99640 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00143 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46928 * 90.00152 * 18 16 14 20 20 H 1.48496 * 109.46896 * 210.00119 * 18 16 14 21 21 H 1.48495 * 109.47269 * 330.00253 * 18 16 14 22 22 C 1.46930 * 120.62821 * 185.74366 * 8 6 5 23 23 C 1.39519 * 118.88078 * 0.54838 * 5 4 3 24 24 C 1.50704 * 119.71462 * 179.71517 * 23 5 4 25 25 C 1.53001 * 117.49629 * 245.74871 * 24 23 5 26 26 C 1.53002 * 60.03201 * 252.52527 * 25 24 23 27 27 N 1.31690 * 120.56652 * 359.43415 * 23 5 4 28 28 H 1.09005 * 109.46950 * 269.97602 * 1 2 3 29 29 H 1.09000 * 109.46946 * 29.97475 * 1 2 3 30 30 H 1.09000 * 109.47164 * 149.98184 * 1 2 3 31 31 H 1.07997 * 120.34757 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.85651 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.58649 * 246.20338 * 9 8 6 34 34 H 1.09000 * 109.58671 * 6.62065 * 9 8 6 35 35 H 1.08996 * 109.63746 * 294.86318 * 10 9 8 36 36 H 1.09006 * 109.42940 * 174.72718 * 10 9 8 37 37 H 1.09004 * 109.46172 * 178.48592 * 11 10 9 38 38 H 1.09006 * 109.44499 * 58.52324 * 11 10 9 39 39 H 0.97001 * 119.99502 * 179.97438 * 17 16 14 40 40 H 1.09008 * 109.58442 * 353.37198 * 22 8 6 41 41 H 1.09002 * 109.58813 * 113.79689 * 22 8 6 42 42 H 1.08991 * 115.56072 * 31.43971 * 24 23 5 43 43 H 1.09000 * 117.49805 * 145.02148 * 25 24 23 44 44 H 1.09001 * 117.49423 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.50020 * 107.48221 * 26 25 24 46 46 H 1.08995 * 117.49477 * 252.47919 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0339 0.0068 6 6 5.7083 -0.0966 0.0139 7 8 6.2897 -0.8211 -0.7698 8 7 6.4102 0.6499 0.8896 9 6 5.7224 1.4385 1.9210 10 6 6.3103 1.0693 3.2913 11 6 7.8277 1.2653 3.2585 12 6 8.4409 0.3386 2.2062 13 1 8.1934 -0.6959 2.4440 14 6 9.9383 0.5082 2.1969 15 1 10.4070 1.2055 2.8755 16 6 10.7100 -0.2268 1.3221 17 7 10.1393 -1.0763 0.4961 18 14 12.5660 -0.0161 1.3102 19 1 13.1791 -0.9737 2.2654 20 1 13.0852 -0.2789 -0.0560 21 1 12.9092 1.3717 1.7117 22 6 7.8774 0.6952 0.8271 23 6 3.4717 -1.2042 0.0005 24 6 4.1628 -2.5434 0.0006 25 6 3.9972 -3.4239 -1.2396 26 6 3.2814 -3.7935 0.0611 27 7 2.1559 -1.1486 0.0001 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6443 2.1382 0.0004 32 1 4.1275 2.1265 0.0010 33 1 5.8733 2.5009 1.7297 34 1 4.6567 1.2101 1.9054 35 1 6.0829 0.0279 3.5189 36 1 5.8768 1.7125 4.0571 37 1 8.2456 1.0300 4.2374 38 1 8.0544 2.3013 3.0065 39 1 10.6822 -1.5931 -0.1196 40 1 8.2341 -0.0239 0.0895 41 1 8.2005 1.6983 0.5485 42 1 5.1216 -2.5778 0.5179 43 1 4.8471 -4.0375 -1.5383 44 1 3.3887 -3.0343 -2.0557 45 1 2.2021 -3.6468 0.1009 46 1 3.6602 -4.6505 0.6180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:02 Heat of formation + Delta-G solvation = -0.202002 kcal Electronic energy + Delta-G solvation = -26849.726608 eV Core-core repulsion = 23317.828269 eV Total energy + Delta-G solvation = -3531.898339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01387 -40.42325 -38.39667 -37.88124 -35.44789 -34.19055 -33.26598 -32.98902 -31.52882 -29.17828 -27.15232 -26.45675 -25.38166 -23.71748 -23.48545 -23.18570 -21.93699 -21.50399 -20.14104 -18.68785 -18.00222 -17.76415 -17.14490 -17.02486 -16.55207 -15.97715 -15.81089 -15.35907 -15.25099 -15.21548 -14.83859 -14.60634 -14.42085 -14.20009 -13.83805 -13.69301 -13.48618 -13.36523 -12.98113 -12.90098 -12.73343 -12.69311 -12.43369 -12.29522 -12.26122 -11.95574 -11.71263 -11.60650 -11.46500 -11.18957 -10.99573 -10.94485 -10.69465 -10.54138 -10.36366 -9.72373 -9.42649 -8.11741 -6.29455 -0.24898 0.15900 1.39566 1.40478 1.51361 1.70942 2.13004 2.41211 2.54050 2.99193 3.05945 3.16183 3.41471 3.63414 3.73330 3.89299 3.99673 4.07986 4.10845 4.13894 4.19983 4.26085 4.39639 4.53978 4.58286 4.69063 4.69249 4.73460 4.76325 4.81782 4.86043 4.91180 4.99094 5.03958 5.06190 5.17699 5.20120 5.22207 5.23697 5.25331 5.33340 5.52601 5.60041 5.67403 5.87333 5.97596 6.30790 6.57922 6.83356 6.91112 7.23564 7.41046 8.91448 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018011 B = 0.003997 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.201457 B = 7002.753921 C = 7931.907012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.139 3.861 3 C -0.169 4.169 4 C -0.039 4.039 5 C -0.196 4.196 6 C 0.548 3.452 7 O -0.575 6.575 8 N -0.602 5.602 9 C 0.102 3.898 10 C -0.127 4.127 11 C -0.104 4.104 12 C 0.039 3.961 13 H -0.019 1.019 14 C -0.536 4.536 15 H 0.063 0.937 16 C 0.010 3.990 17 N -0.915 5.915 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.260 1.260 22 C 0.127 3.873 23 C 0.200 3.800 24 C -0.139 4.139 25 C -0.150 4.150 26 C -0.134 4.134 27 N -0.497 5.497 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.185 0.815 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.259 0.741 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.623 6.303 1.431 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.000 4.000 3 C -0.188 4.188 4 C -0.065 4.065 5 C -0.201 4.201 6 C 0.336 3.664 7 O -0.455 6.455 8 N -0.333 5.333 9 C -0.020 4.020 10 C -0.165 4.165 11 C -0.141 4.141 12 C 0.020 3.980 13 H 0.000 1.000 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.190 4.190 17 N -0.553 5.553 18 Si 0.783 3.217 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.184 1.184 22 C 0.005 3.995 23 C 0.062 3.938 24 C -0.158 4.158 25 C -0.187 4.187 26 C -0.171 4.171 27 N -0.207 5.207 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.202 0.798 32 H 0.176 0.824 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.135 0.865 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.739 5.053 0.901 22.337 hybrid contribution 2.448 0.291 -0.275 2.480 sum -19.291 5.345 0.626 20.028 Atomic orbital electron populations 1.20872 0.85494 1.04831 1.04521 1.22227 0.99012 0.87803 0.90936 1.22293 0.93269 1.00869 1.02361 1.22001 0.95662 0.96356 0.92436 1.20636 0.92950 0.96484 1.10020 1.18687 0.87431 0.79479 0.80805 1.90771 1.72060 1.40602 1.42099 1.48447 1.07905 1.45742 1.31250 1.22204 0.96977 0.95991 0.86778 1.21986 0.95980 1.01373 0.97117 1.21511 0.94578 0.99508 0.98553 1.18892 0.94227 0.93446 0.91479 1.00035 1.21509 0.92340 1.23554 1.20031 0.91833 1.25907 1.03338 0.94642 0.95080 1.70105 1.36780 1.25906 1.22525 0.85554 0.80064 0.78982 0.77073 1.20221 1.21381 1.18424 1.21741 0.76016 0.99811 1.01949 1.20222 0.89069 0.92605 0.91887 1.20781 0.99636 0.89096 1.06306 1.22844 1.02918 1.01409 0.91550 1.23018 0.99389 0.95618 0.99045 1.67278 1.07602 1.30767 1.15076 0.88635 0.87691 0.90734 0.79791 0.82397 0.89085 0.88616 0.93943 0.87654 0.92970 0.91908 0.93191 0.90481 0.93908 0.89782 0.88669 0.88706 0.86525 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.16 71.24 0.72 -0.37 16 2 C 0.14 2.75 6.78 42.58 0.29 3.04 16 3 C -0.17 -2.88 9.72 22.33 0.22 -2.66 16 4 C -0.04 -0.91 7.69 22.73 0.17 -0.74 16 5 C -0.20 -6.57 4.83 -19.99 -0.10 -6.66 16 6 C 0.55 23.73 6.49 86.78 0.56 24.30 16 7 O -0.58 -30.71 15.12 -3.85 -0.06 -30.77 16 8 N -0.60 -24.87 2.97 -821.47 -2.44 -27.31 16 9 C 0.10 3.02 5.34 86.51 0.46 3.48 16 10 C -0.13 -3.91 6.10 30.82 0.19 -3.72 16 11 C -0.10 -4.04 5.11 30.62 0.16 -3.89 16 12 C 0.04 1.99 2.25 -11.46 -0.03 1.96 16 13 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 14 C -0.54 -29.74 8.57 25.60 0.22 -29.52 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.01 0.55 5.30 84.65 0.45 1.00 16 17 N -0.91 -56.40 11.39 21.45 0.24 -56.15 16 18 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 C 0.13 6.41 5.41 86.36 0.47 6.87 16 23 C 0.20 6.62 6.49 42.89 0.28 6.90 16 24 C -0.14 -4.92 4.82 -11.51 -0.06 -4.98 16 25 C -0.15 -4.65 10.23 30.60 0.31 -4.34 16 26 C -0.13 -3.65 10.03 30.62 0.31 -3.35 16 27 N -0.50 -13.61 9.19 -171.05 -1.57 -15.18 16 28 H 0.10 0.81 8.14 -2.38 -0.02 0.80 16 29 H 0.10 0.58 8.07 -2.39 -0.02 0.56 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.16 3.06 7.40 -2.91 -0.02 3.04 16 33 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 2.40 5.13 -2.39 -0.01 2.39 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.08 4.68 5.11 -2.38 -0.01 4.67 16 41 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.08 3.60 7.20 -2.39 -0.02 3.58 16 43 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.12 2.92 7.54 -2.39 -0.02 2.90 16 46 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -76.76 367.11 3.80 -72.96 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.97 Total: 22.49 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.63 Total: -12.66 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -3.76 Total: -98.64 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.06 Total: -30.77 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -76.76 3.80 -72.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.756 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds