Wall clock time and date at job start Tue Mar 31 2020 10:55:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.38350 * 119.46344 * 2 1
4 4 C 1.38356 * 119.30500 * 180.02562 * 3 2 1
5 5 C 1.40024 * 118.28683 * 359.97438 * 4 3 2
6 6 C 1.47842 * 120.55758 * 179.97438 * 5 4 3
7 7 O 1.21557 * 119.99676 * 126.32886 * 6 5 4
8 8 N 1.34777 * 120.00217 * 306.32874 * 6 5 4
9 9 C 1.46930 * 120.63110 * 4.08671 * 8 6 5
10 10 C 1.53187 * 108.77439 * 233.58732 * 9 8 6
11 11 C 1.53044 * 109.31036 * 305.36136 * 10 9 8
12 12 C 1.53043 * 109.53731 * 61.36791 * 11 10 9
13 13 H 1.09001 * 109.49749 * 58.62196 * 12 11 10
14 14 C 1.50699 * 109.49671 * 178.67986 * 12 11 10
15 15 H 1.07999 * 120.00135 * 5.48925 * 14 12 11
16 16 C 1.37871 * 120.00088 * 185.48243 * 14 12 11
17 17 N 1.31511 * 119.99996 * 7.21452 * 16 14 12
18 18 Si 1.86797 * 120.00122 * 187.21361 * 16 14 12
19 19 H 1.48504 * 109.47230 * 94.98206 * 18 16 14
20 20 H 1.48498 * 109.47425 * 214.98128 * 18 16 14
21 21 H 1.48497 * 109.47403 * 334.98096 * 18 16 14
22 22 C 1.46923 * 120.63247 * 183.80532 * 8 6 5
23 23 C 1.39519 * 118.88392 * 0.02562 * 5 4 3
24 24 C 1.50701 * 119.71797 * 179.97438 * 23 5 4
25 25 C 1.52998 * 117.49787 * 191.70115 * 24 23 5
26 26 C 1.52995 * 117.49833 * 123.07990 * 24 23 5
27 27 N 1.31697 * 120.56531 * 359.97438 * 23 5 4
28 28 H 1.08995 * 109.47068 * 269.99844 * 1 2 3
29 29 H 1.09009 * 109.46853 * 29.99560 * 1 2 3
30 30 H 1.09002 * 109.47385 * 149.99368 * 1 2 3
31 31 H 1.08004 * 120.34758 * 0.02597 * 3 2 1
32 32 H 1.07997 * 120.85567 * 180.27642 * 4 3 2
33 33 H 1.09000 * 109.58179 * 353.36684 * 9 8 6
34 34 H 1.09000 * 109.58728 * 113.65261 * 9 8 6
35 35 H 1.08997 * 109.50167 * 65.30983 * 10 9 8
36 36 H 1.09002 * 109.50032 * 185.41014 * 10 9 8
37 37 H 1.09004 * 109.45810 * 181.38515 * 11 10 9
38 38 H 1.08997 * 109.45909 * 301.34541 * 11 10 9
39 39 H 0.97004 * 120.00271 * 179.97438 * 17 16 14
40 40 H 1.09004 * 109.58765 * 246.20357 * 22 8 6
41 41 H 1.09001 * 109.58347 * 6.62227 * 22 8 6
42 42 H 1.08997 * 115.54758 * 337.40168 * 24 23 5
43 43 H 1.08995 * 117.50210 * 359.97438 * 25 24 23
44 44 H 1.09004 * 117.49955 * 145.02040 * 25 24 23
45 45 H 1.09001 * 117.49981 * 214.98160 * 26 24 23
46 46 H 1.09004 * 117.50226 * 359.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1875 1.2046 0.0000
4 6 3.5711 1.2007 -0.0005
5 6 4.2312 -0.0341 -0.0005
6 6 5.7083 -0.0968 -0.0016
7 8 6.2897 -0.7453 0.8463
8 7 6.4102 0.5651 -0.9428
9 6 5.7275 1.4245 -1.9196
10 6 6.1451 0.9963 -3.3299
11 6 7.6719 1.0166 -3.4336
12 6 8.2662 0.0242 -2.4317
13 1 7.8821 -0.9749 -2.6377
14 6 9.7680 0.0212 -2.5572
15 1 10.2563 0.7250 -3.2149
16 6 10.5186 -0.8798 -1.8322
17 7 9.9224 -1.8273 -1.1421
18 14 12.3823 -0.7547 -1.8301
19 1 12.8248 0.0260 -0.6469
20 1 12.9699 -2.1173 -1.7719
21 1 12.8342 -0.0735 -3.0698
22 6 7.8731 0.4457 -1.0077
23 6 3.4716 -1.2044 -0.0005
24 6 4.1626 -2.5436 -0.0011
25 6 3.3055 -3.7807 -0.2763
26 6 3.8287 -3.5113 1.1360
27 7 2.1558 -1.1487 0.0000
28 1 -0.3633 0.0000 1.0276
29 1 -0.3633 0.8901 -0.5138
30 1 -0.3634 -0.8899 -0.5139
31 1 1.6444 2.1381 0.0004
32 1 4.1275 2.1263 0.0039
33 1 4.6484 1.3169 -1.8096
34 1 6.0101 2.4639 -1.7522
35 1 5.7805 -0.0117 -3.5270
36 1 5.7216 1.6861 -4.0599
37 1 7.9709 0.7360 -4.4436
38 1 8.0376 2.0193 -3.2122
39 1 10.4505 -2.4615 -0.6323
40 1 8.3291 1.4067 -0.7692
41 1 8.2102 -0.3077 -0.2959
42 1 5.1849 -2.5449 -0.3793
43 1 2.2417 -3.6261 -0.4565
44 1 3.7638 -4.5963 -0.8358
45 1 4.6313 -4.1495 1.5057
46 1 3.1095 -3.1792 1.8847
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597903581.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:07
Heat of formation + Delta-G solvation = 16.377595 kcal
Electronic energy + Delta-G solvation = -26878.217874 eV
Core-core repulsion = 23347.038480 eV
Total energy + Delta-G solvation = -3531.179394 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.84457 -39.00992 -36.98021 -36.54346 -33.73558 -32.80138 -32.05177 -31.67087
-29.86289 -28.23237 -25.34282 -24.97206 -24.16485 -22.58115 -22.08193 -21.88223
-20.71765 -20.01946 -18.61542 -17.08777 -16.64210 -16.17413 -16.00974 -15.60569
-14.84516 -14.68774 -14.45722 -14.18310 -14.05525 -13.78774 -13.48795 -13.25918
-12.86628 -12.70302 -12.66001 -12.57987 -12.29478 -12.12332 -11.91937 -11.47617
-11.31766 -11.06720 -10.97716 -10.63550 -10.57255 -10.42385 -10.31388 -10.27054
-9.93375 -9.78015 -9.63646 -9.31339 -9.10066 -8.91742 -8.62181 -8.43670
-7.82426 -6.04072 -4.09537 0.84439 1.15479 3.11431 3.29778 3.37959
3.39631 3.47924 3.71061 4.05890 4.21707 4.41986 4.52051 4.60127
4.78872 4.95389 5.16290 5.21667 5.24886 5.28039 5.30240 5.32462
5.38565 5.41135 5.46878 5.62131 5.65622 5.79105 5.83984 5.91988
5.96817 6.03401 6.13351 6.14821 6.27484 6.34184 6.40671 6.53793
6.59492 6.61866 6.80542 6.92300 7.06198 7.16016 7.56874 7.81552
7.92104 7.95080 8.12185 8.35120 8.74504 8.95094 9.55478 11.03720
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.017629 B = 0.004085 C = 0.003598
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1587.923792 B = 6852.523551 C = 7779.335003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.140 3.860
3 C -0.187 4.187
4 C -0.043 4.043
5 C -0.167 4.167
6 C 0.554 3.446
7 O -0.524 6.524
8 N -0.597 5.597
9 C 0.103 3.897
10 C -0.133 4.133
11 C -0.110 4.110
12 C 0.040 3.960
13 H 0.036 0.964
14 C -0.523 4.523
15 H 0.058 0.942
16 C 0.066 3.934
17 N -0.878 5.878
18 Si 0.889 3.111
19 H -0.280 1.280
20 H -0.286 1.286
21 H -0.274 1.274
22 C 0.118 3.882
23 C 0.214 3.786
24 C -0.117 4.117
25 C -0.160 4.160
26 C -0.149 4.149
27 N -0.485 5.485
28 H 0.078 0.922
29 H 0.075 0.925
30 H 0.077 0.923
31 H 0.138 0.862
32 H 0.140 0.860
33 H 0.074 0.926
34 H 0.063 0.937
35 H 0.060 0.940
36 H 0.059 0.941
37 H 0.053 0.947
38 H 0.049 0.951
39 H 0.263 0.737
40 H 0.046 0.954
41 H 0.107 0.893
42 H 0.128 0.872
43 H 0.104 0.896
44 H 0.096 0.904
45 H 0.100 0.900
46 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.093 5.064 0.797 18.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.002 3.998
3 C -0.206 4.206
4 C -0.069 4.069
5 C -0.172 4.172
6 C 0.340 3.660
7 O -0.401 6.401
8 N -0.329 5.329
9 C -0.021 4.021
10 C -0.172 4.172
11 C -0.148 4.148
12 C 0.020 3.980
13 H 0.054 0.946
14 C -0.561 4.561
15 H 0.076 0.924
16 C -0.138 4.138
17 N -0.515 5.515
18 Si 0.717 3.283
19 H -0.206 1.206
20 H -0.212 1.212
21 H -0.199 1.199
22 C -0.002 4.002
23 C 0.076 3.924
24 C -0.136 4.136
25 C -0.197 4.197
26 C -0.187 4.187
27 N -0.195 5.195
28 H 0.096 0.904
29 H 0.094 0.906
30 H 0.096 0.904
31 H 0.155 0.845
32 H 0.158 0.842
33 H 0.092 0.908
34 H 0.082 0.918
35 H 0.079 0.921
36 H 0.078 0.922
37 H 0.071 0.929
38 H 0.068 0.932
39 H 0.073 0.927
40 H 0.064 0.936
41 H 0.125 0.875
42 H 0.145 0.855
43 H 0.123 0.877
44 H 0.114 0.886
45 H 0.118 0.882
46 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -18.193 3.795 1.365 18.634
hybrid contribution 1.595 1.073 -0.003 1.922
sum -16.598 4.867 1.362 17.351
Atomic orbital electron populations
1.20723 0.88719 1.03494 1.03074 1.21366 0.96974 0.88190 0.93305
1.21812 0.94381 0.99330 1.05120 1.21715 0.94434 0.97284 0.93513
1.20884 0.95690 0.94495 1.06125 1.18022 0.85631 0.80141 0.82229
1.90811 1.70518 1.41569 1.37189 1.48441 1.09643 1.45301 1.29534
1.21849 0.96713 0.93986 0.89546 1.21945 0.98956 1.01176 0.95091
1.21631 0.92074 1.00422 1.00652 1.19051 0.95445 0.94514 0.88949
0.94573 1.21049 0.90678 1.18096 1.26300 0.92357 1.25032 0.98528
0.94747 0.95484 1.69958 1.35504 1.15494 1.30572 0.86628 0.85899
0.77414 0.78382 1.20637 1.21233 1.19881 1.22339 0.73709 1.01163
1.02983 1.20325 0.88105 0.93154 0.90818 1.21008 0.99802 0.86373
1.06392 1.22958 1.00268 0.97655 0.98860 1.22850 1.03014 1.01190
0.91598 1.67224 1.08889 1.29078 1.14294 0.90365 0.90639 0.90400
0.84459 0.84242 0.90831 0.91840 0.92115 0.92196 0.92856 0.93230
0.92707 0.93574 0.87465 0.85461 0.87743 0.88595 0.88188 0.88936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.81 10.16 36.01 0.37 -0.45 16
2 C 0.14 1.66 6.78 -82.51 -0.56 1.10 16
3 C -0.19 -2.02 9.72 -39.50 -0.38 -2.41 16
4 C -0.04 -0.57 7.55 -38.87 -0.29 -0.86 16
5 C -0.17 -2.79 4.91 -104.82 -0.51 -3.30 16
6 C 0.55 11.28 6.29 -12.33 -0.08 11.20 16
7 O -0.52 -12.69 15.35 5.32 0.08 -12.61 16
8 N -0.60 -11.83 2.97 -173.62 -0.51 -12.34 16
9 C 0.10 1.60 5.56 -3.71 -0.02 1.58 16
10 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16
11 C -0.11 -2.16 5.11 -26.69 -0.14 -2.29 16
12 C 0.04 0.96 2.13 -91.43 -0.19 0.77 16
13 H 0.04 0.99 8.10 -51.93 -0.42 0.57 16
14 C -0.52 -13.98 8.48 -34.44 -0.29 -14.28 16
15 H 0.06 1.53 7.76 -52.49 -0.41 1.12 16
16 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16
17 N -0.88 -25.42 12.12 55.43 0.67 -24.74 16
18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16
19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16
21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
22 C 0.12 2.79 5.50 -3.49 -0.02 2.77 16
23 C 0.21 3.53 6.47 -82.17 -0.53 3.00 16
24 C -0.12 -1.97 5.16 -91.77 -0.47 -2.44 16
25 C -0.16 -2.21 10.02 -26.73 -0.27 -2.47 16
26 C -0.15 -2.17 10.23 -26.74 -0.27 -2.45 16
27 N -0.49 -7.08 9.26 -5.42 -0.05 -7.13 16
28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.07 0.43 8.07 -51.92 -0.42 0.01 16
30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16
31 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16
32 H 0.14 1.56 7.41 -52.49 -0.39 1.17 16
33 H 0.07 1.01 4.71 -51.93 -0.24 0.76 16
34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16
36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16
39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
41 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16
42 H 0.13 2.51 6.89 -51.93 -0.36 2.15 16
43 H 0.10 1.38 7.60 -51.93 -0.39 0.99 16
44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16
45 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16
46 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16
LS Contribution 368.34 15.07 5.55 5.55
Total: -1.00 -31.38 368.34 -10.36 -41.74
By element:
Atomic # 1 Polarization: 11.75 SS G_CDS: -7.15 Total: 4.60 kcal
Atomic # 6 Polarization: -7.24 SS G_CDS: -3.93 Total: -11.16 kcal
Atomic # 7 Polarization: -44.32 SS G_CDS: 0.11 Total: -44.21 kcal
Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -31.38 -10.36 -41.74 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597903581.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.117 kcal
(2) G-P(sol) polarization free energy of solvation -31.382 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds