Wall clock time and date at job start Tue Mar 31 2020 10:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38350 * 119.46344 * 2 1 4 4 C 1.38356 * 119.30500 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.28683 * 359.97438 * 4 3 2 6 6 C 1.47842 * 120.55758 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99676 * 126.32886 * 6 5 4 8 8 N 1.34777 * 120.00217 * 306.32874 * 6 5 4 9 9 C 1.46930 * 120.63110 * 4.08671 * 8 6 5 10 10 C 1.53187 * 108.77439 * 233.58732 * 9 8 6 11 11 C 1.53044 * 109.31036 * 305.36136 * 10 9 8 12 12 C 1.53043 * 109.53731 * 61.36791 * 11 10 9 13 13 H 1.09001 * 109.49749 * 58.62196 * 12 11 10 14 14 C 1.50699 * 109.49671 * 178.67986 * 12 11 10 15 15 H 1.07999 * 120.00135 * 5.48925 * 14 12 11 16 16 C 1.37871 * 120.00088 * 185.48243 * 14 12 11 17 17 N 1.31511 * 119.99996 * 7.21452 * 16 14 12 18 18 Si 1.86797 * 120.00122 * 187.21361 * 16 14 12 19 19 H 1.48504 * 109.47230 * 94.98206 * 18 16 14 20 20 H 1.48498 * 109.47425 * 214.98128 * 18 16 14 21 21 H 1.48497 * 109.47403 * 334.98096 * 18 16 14 22 22 C 1.46923 * 120.63247 * 183.80532 * 8 6 5 23 23 C 1.39519 * 118.88392 * 0.02562 * 5 4 3 24 24 C 1.50701 * 119.71797 * 179.97438 * 23 5 4 25 25 C 1.52998 * 117.49787 * 191.70115 * 24 23 5 26 26 C 1.52995 * 117.49833 * 123.07990 * 24 23 5 27 27 N 1.31697 * 120.56531 * 359.97438 * 23 5 4 28 28 H 1.08995 * 109.47068 * 269.99844 * 1 2 3 29 29 H 1.09009 * 109.46853 * 29.99560 * 1 2 3 30 30 H 1.09002 * 109.47385 * 149.99368 * 1 2 3 31 31 H 1.08004 * 120.34758 * 0.02597 * 3 2 1 32 32 H 1.07997 * 120.85567 * 180.27642 * 4 3 2 33 33 H 1.09000 * 109.58179 * 353.36684 * 9 8 6 34 34 H 1.09000 * 109.58728 * 113.65261 * 9 8 6 35 35 H 1.08997 * 109.50167 * 65.30983 * 10 9 8 36 36 H 1.09002 * 109.50032 * 185.41014 * 10 9 8 37 37 H 1.09004 * 109.45810 * 181.38515 * 11 10 9 38 38 H 1.08997 * 109.45909 * 301.34541 * 11 10 9 39 39 H 0.97004 * 120.00271 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.58765 * 246.20357 * 22 8 6 41 41 H 1.09001 * 109.58347 * 6.62227 * 22 8 6 42 42 H 1.08997 * 115.54758 * 337.40168 * 24 23 5 43 43 H 1.08995 * 117.50210 * 359.97438 * 25 24 23 44 44 H 1.09004 * 117.49955 * 145.02040 * 25 24 23 45 45 H 1.09001 * 117.49981 * 214.98160 * 26 24 23 46 46 H 1.09004 * 117.50226 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 -0.0005 5 6 4.2312 -0.0341 -0.0005 6 6 5.7083 -0.0968 -0.0016 7 8 6.2897 -0.7453 0.8463 8 7 6.4102 0.5651 -0.9428 9 6 5.7275 1.4245 -1.9196 10 6 6.1451 0.9963 -3.3299 11 6 7.6719 1.0166 -3.4336 12 6 8.2662 0.0242 -2.4317 13 1 7.8821 -0.9749 -2.6377 14 6 9.7680 0.0212 -2.5572 15 1 10.2563 0.7250 -3.2149 16 6 10.5186 -0.8798 -1.8322 17 7 9.9224 -1.8273 -1.1421 18 14 12.3823 -0.7547 -1.8301 19 1 12.8248 0.0260 -0.6469 20 1 12.9699 -2.1173 -1.7719 21 1 12.8342 -0.0735 -3.0698 22 6 7.8731 0.4457 -1.0077 23 6 3.4716 -1.2044 -0.0005 24 6 4.1626 -2.5436 -0.0011 25 6 3.3055 -3.7807 -0.2763 26 6 3.8287 -3.5113 1.1360 27 7 2.1558 -1.1487 0.0000 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6444 2.1381 0.0004 32 1 4.1275 2.1263 0.0039 33 1 4.6484 1.3169 -1.8096 34 1 6.0101 2.4639 -1.7522 35 1 5.7805 -0.0117 -3.5270 36 1 5.7216 1.6861 -4.0599 37 1 7.9709 0.7360 -4.4436 38 1 8.0376 2.0193 -3.2122 39 1 10.4505 -2.4615 -0.6323 40 1 8.3291 1.4067 -0.7692 41 1 8.2102 -0.3077 -0.2959 42 1 5.1849 -2.5449 -0.3793 43 1 2.2417 -3.6261 -0.4565 44 1 3.7638 -4.5963 -0.8358 45 1 4.6313 -4.1495 1.5057 46 1 3.1095 -3.1792 1.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903581.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:07 Heat of formation + Delta-G solvation = 16.377595 kcal Electronic energy + Delta-G solvation = -26878.217874 eV Core-core repulsion = 23347.038480 eV Total energy + Delta-G solvation = -3531.179394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84457 -39.00992 -36.98021 -36.54346 -33.73558 -32.80138 -32.05177 -31.67087 -29.86289 -28.23237 -25.34282 -24.97206 -24.16485 -22.58115 -22.08193 -21.88223 -20.71765 -20.01946 -18.61542 -17.08777 -16.64210 -16.17413 -16.00974 -15.60569 -14.84516 -14.68774 -14.45722 -14.18310 -14.05525 -13.78774 -13.48795 -13.25918 -12.86628 -12.70302 -12.66001 -12.57987 -12.29478 -12.12332 -11.91937 -11.47617 -11.31766 -11.06720 -10.97716 -10.63550 -10.57255 -10.42385 -10.31388 -10.27054 -9.93375 -9.78015 -9.63646 -9.31339 -9.10066 -8.91742 -8.62181 -8.43670 -7.82426 -6.04072 -4.09537 0.84439 1.15479 3.11431 3.29778 3.37959 3.39631 3.47924 3.71061 4.05890 4.21707 4.41986 4.52051 4.60127 4.78872 4.95389 5.16290 5.21667 5.24886 5.28039 5.30240 5.32462 5.38565 5.41135 5.46878 5.62131 5.65622 5.79105 5.83984 5.91988 5.96817 6.03401 6.13351 6.14821 6.27484 6.34184 6.40671 6.53793 6.59492 6.61866 6.80542 6.92300 7.06198 7.16016 7.56874 7.81552 7.92104 7.95080 8.12185 8.35120 8.74504 8.95094 9.55478 11.03720 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.004085 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.923792 B = 6852.523551 C = 7779.335003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.140 3.860 3 C -0.187 4.187 4 C -0.043 4.043 5 C -0.167 4.167 6 C 0.554 3.446 7 O -0.524 6.524 8 N -0.597 5.597 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.036 0.964 14 C -0.523 4.523 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.878 5.878 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.118 3.882 23 C 0.214 3.786 24 C -0.117 4.117 25 C -0.160 4.160 26 C -0.149 4.149 27 N -0.485 5.485 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.093 5.064 0.797 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.002 3.998 3 C -0.206 4.206 4 C -0.069 4.069 5 C -0.172 4.172 6 C 0.340 3.660 7 O -0.401 6.401 8 N -0.329 5.329 9 C -0.021 4.021 10 C -0.172 4.172 11 C -0.148 4.148 12 C 0.020 3.980 13 H 0.054 0.946 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.515 5.515 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.002 4.002 23 C 0.076 3.924 24 C -0.136 4.136 25 C -0.197 4.197 26 C -0.187 4.187 27 N -0.195 5.195 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.193 3.795 1.365 18.634 hybrid contribution 1.595 1.073 -0.003 1.922 sum -16.598 4.867 1.362 17.351 Atomic orbital electron populations 1.20723 0.88719 1.03494 1.03074 1.21366 0.96974 0.88190 0.93305 1.21812 0.94381 0.99330 1.05120 1.21715 0.94434 0.97284 0.93513 1.20884 0.95690 0.94495 1.06125 1.18022 0.85631 0.80141 0.82229 1.90811 1.70518 1.41569 1.37189 1.48441 1.09643 1.45301 1.29534 1.21849 0.96713 0.93986 0.89546 1.21945 0.98956 1.01176 0.95091 1.21631 0.92074 1.00422 1.00652 1.19051 0.95445 0.94514 0.88949 0.94573 1.21049 0.90678 1.18096 1.26300 0.92357 1.25032 0.98528 0.94747 0.95484 1.69958 1.35504 1.15494 1.30572 0.86628 0.85899 0.77414 0.78382 1.20637 1.21233 1.19881 1.22339 0.73709 1.01163 1.02983 1.20325 0.88105 0.93154 0.90818 1.21008 0.99802 0.86373 1.06392 1.22958 1.00268 0.97655 0.98860 1.22850 1.03014 1.01190 0.91598 1.67224 1.08889 1.29078 1.14294 0.90365 0.90639 0.90400 0.84459 0.84242 0.90831 0.91840 0.92115 0.92196 0.92856 0.93230 0.92707 0.93574 0.87465 0.85461 0.87743 0.88595 0.88188 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.16 36.01 0.37 -0.45 16 2 C 0.14 1.66 6.78 -82.51 -0.56 1.10 16 3 C -0.19 -2.02 9.72 -39.50 -0.38 -2.41 16 4 C -0.04 -0.57 7.55 -38.87 -0.29 -0.86 16 5 C -0.17 -2.79 4.91 -104.82 -0.51 -3.30 16 6 C 0.55 11.28 6.29 -12.33 -0.08 11.20 16 7 O -0.52 -12.69 15.35 5.32 0.08 -12.61 16 8 N -0.60 -11.83 2.97 -173.62 -0.51 -12.34 16 9 C 0.10 1.60 5.56 -3.71 -0.02 1.58 16 10 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 11 C -0.11 -2.16 5.11 -26.69 -0.14 -2.29 16 12 C 0.04 0.96 2.13 -91.43 -0.19 0.77 16 13 H 0.04 0.99 8.10 -51.93 -0.42 0.57 16 14 C -0.52 -13.98 8.48 -34.44 -0.29 -14.28 16 15 H 0.06 1.53 7.76 -52.49 -0.41 1.12 16 16 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 17 N -0.88 -25.42 12.12 55.43 0.67 -24.74 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.12 2.79 5.50 -3.49 -0.02 2.77 16 23 C 0.21 3.53 6.47 -82.17 -0.53 3.00 16 24 C -0.12 -1.97 5.16 -91.77 -0.47 -2.44 16 25 C -0.16 -2.21 10.02 -26.73 -0.27 -2.47 16 26 C -0.15 -2.17 10.23 -26.74 -0.27 -2.45 16 27 N -0.49 -7.08 9.26 -5.42 -0.05 -7.13 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.43 8.07 -51.92 -0.42 0.01 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.14 1.56 7.41 -52.49 -0.39 1.17 16 33 H 0.07 1.01 4.71 -51.93 -0.24 0.76 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16 42 H 0.13 2.51 6.89 -51.93 -0.36 2.15 16 43 H 0.10 1.38 7.60 -51.93 -0.39 0.99 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -31.38 368.34 -10.36 -41.74 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.15 Total: 4.60 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -3.93 Total: -11.16 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.11 Total: -44.21 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.38 -10.36 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903581.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.117 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds