Wall clock time and date at job start Tue Mar 31 2020 10:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38350 * 119.46344 * 2 1 4 4 C 1.38356 * 119.30500 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.28683 * 359.97438 * 4 3 2 6 6 C 1.47842 * 120.55758 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99676 * 126.32886 * 6 5 4 8 8 N 1.34777 * 120.00217 * 306.32874 * 6 5 4 9 9 C 1.46930 * 120.63110 * 4.08671 * 8 6 5 10 10 C 1.53187 * 108.77439 * 233.58732 * 9 8 6 11 11 C 1.53044 * 109.31036 * 305.36136 * 10 9 8 12 12 C 1.53043 * 109.53731 * 61.36791 * 11 10 9 13 13 H 1.09001 * 109.49749 * 58.62196 * 12 11 10 14 14 C 1.50699 * 109.49671 * 178.67986 * 12 11 10 15 15 H 1.07999 * 120.00135 * 5.48925 * 14 12 11 16 16 C 1.37871 * 120.00088 * 185.48243 * 14 12 11 17 17 N 1.31511 * 119.99996 * 7.21452 * 16 14 12 18 18 Si 1.86797 * 120.00122 * 187.21361 * 16 14 12 19 19 H 1.48504 * 109.47230 * 94.98206 * 18 16 14 20 20 H 1.48498 * 109.47425 * 214.98128 * 18 16 14 21 21 H 1.48497 * 109.47403 * 334.98096 * 18 16 14 22 22 C 1.46923 * 120.63247 * 183.80532 * 8 6 5 23 23 C 1.39519 * 118.88392 * 0.02562 * 5 4 3 24 24 C 1.50701 * 119.71797 * 179.97438 * 23 5 4 25 25 C 1.52998 * 117.49787 * 191.70115 * 24 23 5 26 26 C 1.52995 * 117.49833 * 123.07990 * 24 23 5 27 27 N 1.31697 * 120.56531 * 359.97438 * 23 5 4 28 28 H 1.08995 * 109.47068 * 269.99844 * 1 2 3 29 29 H 1.09009 * 109.46853 * 29.99560 * 1 2 3 30 30 H 1.09002 * 109.47385 * 149.99368 * 1 2 3 31 31 H 1.08004 * 120.34758 * 0.02597 * 3 2 1 32 32 H 1.07997 * 120.85567 * 180.27642 * 4 3 2 33 33 H 1.09000 * 109.58179 * 353.36684 * 9 8 6 34 34 H 1.09000 * 109.58728 * 113.65261 * 9 8 6 35 35 H 1.08997 * 109.50167 * 65.30983 * 10 9 8 36 36 H 1.09002 * 109.50032 * 185.41014 * 10 9 8 37 37 H 1.09004 * 109.45810 * 181.38515 * 11 10 9 38 38 H 1.08997 * 109.45909 * 301.34541 * 11 10 9 39 39 H 0.97004 * 120.00271 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.58765 * 246.20357 * 22 8 6 41 41 H 1.09001 * 109.58347 * 6.62227 * 22 8 6 42 42 H 1.08997 * 115.54758 * 337.40168 * 24 23 5 43 43 H 1.08995 * 117.50210 * 359.97438 * 25 24 23 44 44 H 1.09004 * 117.49955 * 145.02040 * 25 24 23 45 45 H 1.09001 * 117.49981 * 214.98160 * 26 24 23 46 46 H 1.09004 * 117.50226 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 -0.0005 5 6 4.2312 -0.0341 -0.0005 6 6 5.7083 -0.0968 -0.0016 7 8 6.2897 -0.7453 0.8463 8 7 6.4102 0.5651 -0.9428 9 6 5.7275 1.4245 -1.9196 10 6 6.1451 0.9963 -3.3299 11 6 7.6719 1.0166 -3.4336 12 6 8.2662 0.0242 -2.4317 13 1 7.8821 -0.9749 -2.6377 14 6 9.7680 0.0212 -2.5572 15 1 10.2563 0.7250 -3.2149 16 6 10.5186 -0.8798 -1.8322 17 7 9.9224 -1.8273 -1.1421 18 14 12.3823 -0.7547 -1.8301 19 1 12.8248 0.0260 -0.6469 20 1 12.9699 -2.1173 -1.7719 21 1 12.8342 -0.0735 -3.0698 22 6 7.8731 0.4457 -1.0077 23 6 3.4716 -1.2044 -0.0005 24 6 4.1626 -2.5436 -0.0011 25 6 3.3055 -3.7807 -0.2763 26 6 3.8287 -3.5113 1.1360 27 7 2.1558 -1.1487 0.0000 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6444 2.1381 0.0004 32 1 4.1275 2.1263 0.0039 33 1 4.6484 1.3169 -1.8096 34 1 6.0101 2.4639 -1.7522 35 1 5.7805 -0.0117 -3.5270 36 1 5.7216 1.6861 -4.0599 37 1 7.9709 0.7360 -4.4436 38 1 8.0376 2.0193 -3.2122 39 1 10.4505 -2.4615 -0.6323 40 1 8.3291 1.4067 -0.7692 41 1 8.2102 -0.3077 -0.2959 42 1 5.1849 -2.5449 -0.3793 43 1 2.2417 -3.6261 -0.4565 44 1 3.7638 -4.5963 -0.8358 45 1 4.6313 -4.1495 1.5057 46 1 3.1095 -3.1792 1.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903581.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:06 Heat of formation + Delta-G solvation = -1.734086 kcal Electronic energy + Delta-G solvation = -26879.003255 eV Core-core repulsion = 23347.038480 eV Total energy + Delta-G solvation = -3531.964775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04158 -40.44929 -38.41605 -37.91888 -35.44038 -34.20620 -33.27907 -33.00055 -31.59847 -29.19843 -27.15044 -26.47218 -25.42252 -23.70180 -23.49317 -23.25011 -21.96889 -21.50753 -20.16119 -18.71133 -18.03155 -17.80848 -17.14989 -17.06042 -16.58317 -15.96744 -15.78352 -15.39211 -15.30383 -15.23837 -14.87326 -14.58676 -14.43049 -14.20835 -13.81047 -13.68943 -13.53503 -13.41538 -12.98078 -12.89615 -12.78444 -12.69308 -12.44840 -12.36724 -12.26671 -11.95364 -11.73380 -11.62713 -11.50139 -11.26970 -11.00040 -10.92604 -10.67394 -10.55598 -10.37616 -9.71901 -9.46752 -8.16266 -6.29370 -0.23325 0.14952 1.38483 1.40051 1.50632 1.63235 2.10003 2.40580 2.51175 3.01112 3.05042 3.15180 3.37556 3.58825 3.72797 3.88029 3.98719 4.08026 4.09829 4.14540 4.18353 4.25263 4.39781 4.52444 4.57588 4.66677 4.68739 4.72639 4.75249 4.78919 4.85812 4.89316 4.98104 5.02169 5.05246 5.15382 5.17646 5.20509 5.23243 5.24004 5.29467 5.50925 5.58211 5.67008 5.84163 5.90281 6.29631 6.52416 6.84096 6.90630 7.18291 7.40209 8.90710 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.004085 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.923792 B = 6852.523551 C = 7779.335003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.138 3.862 3 C -0.168 4.168 4 C -0.040 4.040 5 C -0.195 4.195 6 C 0.550 3.450 7 O -0.581 6.581 8 N -0.600 5.600 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.104 4.104 12 C 0.039 3.961 13 H -0.012 1.012 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 0.955 3.045 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.260 1.260 22 C 0.133 3.867 23 C 0.199 3.801 24 C -0.145 4.145 25 C -0.135 4.135 26 C -0.146 4.146 27 N -0.497 5.497 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.259 0.741 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.188 8.178 -0.224 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.000 4.000 3 C -0.187 4.187 4 C -0.066 4.066 5 C -0.201 4.201 6 C 0.339 3.661 7 O -0.462 6.462 8 N -0.331 5.331 9 C -0.022 4.022 10 C -0.164 4.164 11 C -0.141 4.141 12 C 0.019 3.981 13 H 0.006 0.994 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.188 4.188 17 N -0.555 5.555 18 Si 0.780 3.220 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.184 1.184 22 C 0.011 3.989 23 C 0.062 3.938 24 C -0.165 4.165 25 C -0.172 4.172 26 C -0.184 4.184 27 N -0.207 5.207 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.203 0.797 32 H 0.179 0.821 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.122 0.878 45 H 0.115 0.885 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.309 6.942 0.303 22.413 hybrid contribution 2.449 0.115 0.301 2.470 sum -18.860 7.057 0.604 20.146 Atomic orbital electron populations 1.20872 0.85495 1.04990 1.04359 1.22223 0.99009 0.87808 0.91008 1.22297 0.93266 1.00869 1.02265 1.21994 0.95698 0.96279 0.92626 1.20609 0.92869 0.96598 1.09999 1.18679 0.87494 0.78744 0.81216 1.90759 1.72148 1.43759 1.39506 1.48441 1.08220 1.45976 1.30477 1.22197 0.97871 0.94391 0.87765 1.21910 0.96236 1.01506 0.96796 1.21514 0.94596 0.99289 0.98750 1.18967 0.94619 0.93568 0.90896 0.99417 1.21494 0.92276 1.17724 1.25861 0.91779 1.25882 1.03261 0.94441 0.95211 1.70145 1.37106 1.16519 1.31741 0.85589 0.80261 0.77277 0.78857 1.20242 1.21387 1.18357 1.21752 0.76608 0.99426 1.01125 1.20171 0.89101 0.92473 0.92042 1.20839 0.98463 0.88656 1.08506 1.22998 1.00337 0.95976 0.97857 1.22879 1.03046 1.00405 0.92028 1.67264 1.07521 1.30847 1.15110 0.88961 0.87463 0.90652 0.79661 0.82093 0.88228 0.88908 0.93997 0.87563 0.93003 0.91809 0.93203 0.93276 0.92499 0.90088 0.86479 0.87771 0.88500 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.16 71.24 0.72 -0.38 16 2 C 0.14 2.74 6.78 42.57 0.29 3.03 16 3 C -0.17 -2.82 9.72 22.32 0.22 -2.60 16 4 C -0.04 -0.93 7.55 22.73 0.17 -0.76 16 5 C -0.20 -6.58 4.91 -19.99 -0.10 -6.67 16 6 C 0.55 23.78 6.29 86.79 0.55 24.33 16 7 O -0.58 -30.94 15.35 -3.90 -0.06 -31.00 16 8 N -0.60 -24.60 2.97 -821.49 -2.44 -27.04 16 9 C 0.10 2.89 5.56 86.36 0.48 3.37 16 10 C -0.13 -3.86 6.08 30.67 0.19 -3.67 16 11 C -0.10 -4.01 5.11 30.62 0.16 -3.86 16 12 C 0.04 1.98 2.13 -11.32 -0.02 1.95 16 13 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 14 C -0.54 -29.63 8.48 25.60 0.22 -29.41 16 15 H 0.06 3.39 7.76 -2.91 -0.02 3.37 16 16 C 0.01 0.67 5.27 84.65 0.45 1.11 16 17 N -0.92 -56.77 12.12 21.44 0.26 -56.51 16 18 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 22 C 0.13 6.65 5.50 86.51 0.48 7.13 16 23 C 0.20 6.70 6.47 42.89 0.28 6.98 16 24 C -0.15 -5.29 5.16 -11.54 -0.06 -5.35 16 25 C -0.13 -3.82 10.02 30.59 0.31 -3.51 16 26 C -0.15 -4.51 10.23 30.59 0.31 -4.20 16 27 N -0.50 -13.73 9.26 -171.06 -1.58 -15.32 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.11 0.55 8.07 -2.38 -0.02 0.53 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.16 2.95 7.41 -2.91 -0.02 2.93 16 33 H 0.10 2.42 4.71 -2.39 -0.01 2.41 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.06 3.43 5.88 -2.39 -0.01 3.42 16 42 H 0.08 3.65 6.89 -2.39 -0.02 3.64 16 43 H 0.12 3.01 7.60 -2.39 -0.02 2.99 16 44 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 45 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 46 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 Total: -1.00 -77.63 368.34 3.80 -73.83 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.97 Total: 21.84 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 4.62 Total: -12.51 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -3.76 Total: -98.87 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.06 Total: -31.00 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.63 3.80 -73.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903581.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.097 kcal (2) G-P(sol) polarization free energy of solvation -77.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds