Wall clock time and date at job start Tue Mar 31 2020 11:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 113.41244 * 2 1 4 4 C 1.38233 * 119.99722 * 132.93059 * 3 2 1 5 5 C 1.38238 * 119.99661 * 179.74279 * 4 3 2 6 6 C 1.38236 * 119.99934 * 0.53175 * 5 4 3 7 7 C 1.38228 * 120.00078 * 359.74486 * 6 5 4 8 8 C 1.38236 * 120.00168 * 359.97438 * 7 6 5 9 9 C 1.53492 * 114.21103 * 133.20574 * 2 1 3 10 10 N 1.47069 * 87.98684 * 87.51729 * 9 2 1 11 11 C 1.34776 * 136.05841 * 207.09048 * 10 9 2 12 12 O 1.21592 * 119.99678 * 4.99698 * 11 10 9 13 13 N 1.34768 * 120.00195 * 185.00563 * 11 10 9 14 14 C 1.46502 * 120.00178 * 174.98032 * 13 11 10 15 15 C 1.53004 * 109.46958 * 184.90486 * 14 13 11 16 16 C 1.50697 * 115.54965 * 80.97725 * 15 14 13 17 17 H 1.07999 * 119.99928 * 219.76474 * 16 15 14 18 18 C 1.37879 * 120.00192 * 39.77184 * 16 15 14 19 19 N 1.31506 * 120.00005 * 16.70377 * 18 16 15 20 20 Si 1.86799 * 119.99919 * 196.70696 * 18 16 15 21 21 H 1.48500 * 109.47068 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47226 * 119.99659 * 20 18 16 23 23 H 1.48496 * 109.47349 * 239.99701 * 20 18 16 24 24 C 1.53003 * 117.49770 * 295.30409 * 15 14 13 25 25 C 1.53009 * 60.03171 * 252.49987 * 24 15 14 26 26 C 1.47065 * 87.88301 * 27.34530 * 10 9 2 27 27 H 1.09002 * 109.46956 * 286.79447 * 1 2 3 28 28 H 1.09003 * 109.47815 * 46.79568 * 1 2 3 29 29 H 1.08999 * 109.47095 * 166.79893 * 1 2 3 30 30 H 1.08000 * 120.00323 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.99757 * 180.29219 * 5 4 3 32 32 H 1.08000 * 119.99662 * 179.76342 * 6 5 4 33 33 H 1.08005 * 120.00234 * 179.97438 * 7 6 5 34 34 H 1.07996 * 120.00393 * 180.02562 * 8 7 6 35 35 H 1.09000 * 113.46343 * 332.73584 * 9 2 1 36 36 H 1.09000 * 113.47054 * 202.30206 * 9 2 1 37 37 H 0.97003 * 120.00143 * 354.98027 * 13 11 10 38 38 H 1.09002 * 109.47090 * 64.90388 * 14 13 11 39 39 H 1.08997 * 109.47006 * 304.90129 * 14 13 11 40 40 H 0.96999 * 120.00441 * 184.99317 * 19 18 16 41 41 H 1.08997 * 117.49652 * 0.02562 * 24 15 14 42 42 H 1.08998 * 117.49791 * 144.99859 * 24 15 14 43 43 H 1.09005 * 117.49189 * 107.49837 * 25 24 15 44 44 H 1.08995 * 117.50102 * 252.52170 * 25 24 15 45 45 H 1.08995 * 113.47005 * 87.44193 * 26 10 9 46 46 H 1.09000 * 113.46548 * 217.88079 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1288 1.3830 0.0000 4 6 3.1516 1.6932 0.8765 5 6 3.7045 2.9602 0.8729 6 6 3.2271 3.9201 0.0003 7 6 2.2003 3.6115 -0.8723 8 6 1.6514 2.3429 -0.8727 9 6 2.1594 -0.9584 1.0204 10 7 2.0802 -2.0143 -0.0002 11 6 1.9799 -3.3584 -0.0003 12 8 1.8437 -3.9578 1.0488 13 7 2.0308 -4.0378 -1.1630 14 6 2.0326 -5.5028 -1.1559 15 6 2.2181 -6.0195 -2.5841 16 6 3.6374 -6.0359 -3.0901 17 1 3.8504 -5.7511 -4.1099 18 6 4.6641 -6.4144 -2.2513 19 7 4.3991 -7.0654 -1.1398 20 14 6.4317 -6.0026 -2.6937 21 1 6.4611 -5.2719 -3.9861 22 1 7.0228 -5.1516 -1.6298 23 1 7.2163 -7.2573 -2.8169 24 6 1.1110 -5.7144 -3.5951 25 6 1.2853 -7.1367 -3.0586 26 6 2.1650 -0.9587 -1.0207 27 1 -0.3633 0.2969 0.9839 28 1 -0.3635 0.7035 -0.7491 29 1 -0.3633 -1.0005 -0.2347 30 1 3.5220 0.9444 1.5611 31 1 4.5069 3.2011 1.5545 32 1 3.6565 4.9111 0.0001 33 1 1.8270 4.3617 -1.5538 34 1 0.8495 2.1016 -1.5547 35 1 1.5268 -1.1451 1.8882 36 1 3.1811 -0.6932 1.2922 37 1 2.0662 -3.5569 -2.0047 38 1 1.0845 -5.8654 -0.7586 39 1 2.8498 -5.8621 -0.5306 40 1 5.1124 -7.2681 -0.5146 41 1 0.2508 -5.1451 -3.2429 42 1 1.4093 -5.5254 -4.6263 43 1 0.5394 -7.5034 -2.3533 44 1 1.6985 -7.8832 -3.7367 45 1 3.1881 -0.6937 -1.2870 46 1 1.5371 -1.1457 -1.8918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598656819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:33 Heat of formation + Delta-G solvation = 64.425757 kcal Electronic energy + Delta-G solvation = -25968.375149 eV Core-core repulsion = 22439.279280 eV Total energy + Delta-G solvation = -3529.095869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98807 -39.04308 -37.82090 -36.54486 -33.09730 -32.43032 -32.22649 -31.19354 -29.43557 -27.44916 -26.15547 -25.77603 -24.69540 -23.01735 -22.45999 -21.28171 -19.85778 -19.25313 -18.69461 -17.87175 -17.08246 -16.16839 -15.81219 -15.59629 -15.10078 -14.89379 -14.70214 -14.23067 -13.92022 -13.85344 -13.74474 -13.43091 -13.22295 -12.90359 -12.74332 -12.48433 -12.19274 -11.98536 -11.78180 -11.71076 -11.50392 -11.20785 -11.00478 -10.95248 -10.77281 -10.50652 -10.48224 -10.31564 -9.68872 -9.34206 -9.24242 -9.12150 -8.88375 -8.78183 -8.51471 -8.15763 -7.80080 -6.13471 -4.14275 1.13269 1.20112 2.91405 3.24423 3.34445 3.36666 3.53895 3.83966 4.10784 4.35178 4.44428 4.58118 4.69931 4.77304 4.80173 4.91680 4.96554 5.07479 5.26045 5.33799 5.45108 5.45395 5.48644 5.60818 5.66355 5.71202 5.80160 5.84258 5.89027 5.92848 6.02022 6.08350 6.29966 6.31363 6.31749 6.42251 6.53026 6.60171 6.68316 6.78982 6.93563 7.03620 7.28274 7.53357 7.59377 7.80978 7.94693 8.33754 8.69258 8.83299 9.30102 9.45838 10.90757 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.003375 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.627224 B = 8294.126867 C = 8982.740398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.060 4.060 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.119 4.119 8 C -0.111 4.111 9 C 0.132 3.868 10 N -0.667 5.667 11 C 0.731 3.269 12 O -0.595 6.595 13 N -0.719 5.719 14 C 0.164 3.836 15 C 0.040 3.960 16 C -0.493 4.493 17 H 0.062 0.938 18 C 0.074 3.926 19 N -0.865 5.865 20 Si 0.885 3.115 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 C -0.210 4.210 25 C -0.190 4.190 26 C 0.116 3.884 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.390 0.610 38 H 0.029 0.971 39 H 0.115 0.885 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 21.250 1.481 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C -0.060 4.060 4 C -0.136 4.136 5 C -0.135 4.135 6 C -0.144 4.144 7 C -0.137 4.137 8 C -0.129 4.129 9 C 0.008 3.992 10 N -0.408 5.408 11 C 0.434 3.566 12 O -0.473 6.473 13 N -0.371 5.371 14 C 0.042 3.958 15 C 0.039 3.961 16 C -0.530 4.530 17 H 0.080 0.920 18 C -0.130 4.130 19 N -0.501 5.501 20 Si 0.712 3.288 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.210 1.210 24 C -0.247 4.247 25 C -0.228 4.228 26 C -0.008 4.008 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.223 0.777 38 H 0.047 0.953 39 H 0.133 0.867 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.971 20.302 2.387 21.038 hybrid contribution 1.089 0.420 -0.679 1.350 sum -3.882 20.722 1.709 21.152 Atomic orbital electron populations 1.21495 0.91119 1.02665 1.02341 1.21186 0.96559 0.90168 0.98576 1.19476 0.96157 0.94090 0.96312 1.21206 0.96394 0.96928 0.99025 1.21153 0.99863 0.93458 0.99071 1.21154 0.97380 0.99368 0.96468 1.21134 0.96919 0.96631 0.99063 1.21005 1.00070 0.92952 0.98840 1.22900 1.00439 0.82736 0.93094 1.48516 1.79293 1.02831 1.10196 1.15320 0.77981 0.78378 0.84912 1.90881 1.58611 1.66436 1.31415 1.45201 1.77517 1.08472 1.05908 1.21131 1.01298 0.74961 0.98452 1.19170 0.90667 0.96532 0.89738 1.20514 0.89131 1.45244 0.98119 0.91997 1.24927 0.99075 0.93433 0.95601 1.69947 1.33270 1.35535 1.11341 0.86661 0.85152 0.78362 0.78639 1.19630 1.20821 1.20981 1.22863 1.02266 1.00070 0.99522 1.22941 1.04479 0.91347 1.04074 1.23020 1.00621 0.84138 0.93003 0.91848 0.91863 0.91532 0.85527 0.86086 0.86310 0.86149 0.85872 0.90382 0.90097 0.77710 0.95274 0.86736 0.92636 0.91387 0.90540 0.91500 0.90108 0.90051 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.10 37.16 0.34 -0.80 16 2 C -0.06 -0.67 1.34 -155.01 -0.21 -0.87 16 3 C -0.06 -0.57 5.10 -104.62 -0.53 -1.10 16 4 C -0.12 -1.10 9.22 -39.58 -0.36 -1.47 16 5 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 6 C -0.13 -1.00 10.05 -39.59 -0.40 -1.40 16 7 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 8 C -0.11 -0.95 9.23 -39.58 -0.37 -1.32 16 9 C 0.13 1.71 7.26 -8.51 -0.06 1.64 16 10 N -0.67 -10.85 3.49 -190.82 -0.67 -11.52 16 11 C 0.73 15.60 8.79 -86.93 -0.76 14.84 16 12 O -0.59 -15.11 17.13 5.28 0.09 -15.02 16 13 N -0.72 -15.32 5.52 -65.22 -0.36 -15.68 16 14 C 0.16 4.01 5.37 -4.04 -0.02 3.99 16 15 C 0.04 0.96 1.71 -155.62 -0.27 0.69 16 16 C -0.49 -13.01 8.98 -34.44 -0.31 -13.32 16 17 H 0.06 1.62 7.87 -52.49 -0.41 1.21 16 18 C 0.07 1.98 5.12 -17.82 -0.09 1.89 16 19 N -0.86 -24.35 11.09 55.43 0.61 -23.74 16 20 Si 0.88 20.79 29.57 -169.99 -5.03 15.76 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.21 -4.34 9.80 -26.73 -0.26 -4.60 16 25 C -0.19 -4.27 9.89 -26.69 -0.26 -4.53 16 26 C 0.12 1.42 7.41 -8.38 -0.06 1.36 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.50 6.70 -51.93 -0.35 0.15 16 29 H 0.07 0.75 7.93 -51.93 -0.41 0.34 16 30 H 0.13 1.11 5.81 -52.49 -0.30 0.80 16 31 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.12 0.89 6.97 -52.49 -0.37 0.53 16 35 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.08 0.96 5.98 -51.93 -0.31 0.65 16 37 H 0.39 7.52 8.11 -40.82 -0.33 7.19 16 38 H 0.03 0.71 7.94 -51.93 -0.41 0.30 16 39 H 0.12 3.23 5.47 -51.93 -0.28 2.95 16 40 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 44 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 45 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 46 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -31.57 376.83 -11.06 -42.63 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.96 Total: 9.64 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -4.43 Total: -7.75 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.41 Total: -50.94 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.09 Total: -15.02 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.57 -11.06 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598656819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.055 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds