Wall clock time and date at job start Tue Mar 31 2020 11:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 115.56341 * 2 1 4 4 C 1.53074 * 117.51805 * 214.29441 * 2 1 3 5 5 C 1.53005 * 117.50022 * 145.68264 * 2 1 3 6 6 H 1.09000 * 117.50264 * 215.00624 * 5 2 1 7 7 N 1.46500 * 117.49605 * 0.02562 * 5 2 1 8 8 C 1.34777 * 119.99896 * 204.91104 * 7 5 2 9 9 O 1.21585 * 120.00065 * 4.95036 * 8 7 5 10 10 N 1.34774 * 120.00384 * 184.94648 * 8 7 5 11 11 C 1.47245 * 121.35865 * 174.81578 * 10 8 7 12 12 C 1.52792 * 107.87359 * 115.86882 * 11 10 8 13 13 C 1.50701 * 110.79457 * 47.37484 * 12 11 10 14 14 C 1.41421 * 117.60005 * 160.29451 * 13 12 11 15 15 C 1.41390 * 119.96404 * 359.06356 * 14 13 12 16 16 H 1.08000 * 120.00399 * 328.24639 * 15 14 13 17 17 C 1.39949 * 120.00119 * 148.25063 * 15 14 13 18 18 N 1.30817 * 120.00307 * 167.56117 * 17 15 14 19 19 Si 1.86809 * 119.99481 * 347.55921 * 17 15 14 20 20 H 1.48498 * 109.47006 * 92.52285 * 19 17 15 21 21 H 1.48504 * 109.46480 * 212.51746 * 19 17 15 22 22 H 1.48493 * 109.47170 * 332.51760 * 19 17 15 23 23 C 1.40403 * 120.06859 * 179.08754 * 14 13 12 24 24 C 1.37646 * 119.53990 * 0.29420 * 23 14 13 25 25 C 1.38338 * 119.98749 * 0.11954 * 24 23 14 26 26 C 1.37046 * 123.03264 * 340.12881 * 13 12 11 27 27 C 1.46676 * 121.35014 * 354.84504 * 10 8 7 28 28 H 1.09002 * 109.47462 * 274.31554 * 1 2 3 29 29 H 1.09004 * 109.47274 * 34.31025 * 1 2 3 30 30 H 1.08995 * 109.47374 * 154.31383 * 1 2 3 31 31 H 1.09001 * 109.47354 * 205.68886 * 3 2 1 32 32 H 1.09008 * 109.47241 * 325.68769 * 3 2 1 33 33 H 1.08998 * 109.47298 * 85.68113 * 3 2 1 34 34 H 1.08998 * 117.49586 * 145.03756 * 4 2 1 35 35 H 1.09005 * 117.52578 * 359.97438 * 4 2 1 36 36 H 0.97000 * 120.00022 * 24.90138 * 7 5 2 37 37 H 1.08998 * 109.79485 * 235.48599 * 11 10 8 38 38 H 1.09011 * 109.78434 * 356.26444 * 11 10 8 39 39 H 1.09008 * 109.19827 * 167.77197 * 12 11 10 40 40 H 1.08999 * 109.20025 * 287.05873 * 12 11 10 41 41 H 0.97007 * 120.00301 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.23374 * 180.31297 * 23 14 13 43 43 H 1.07995 * 120.00567 * 180.10958 * 24 23 14 44 44 H 1.07997 * 119.46954 * 179.88817 * 25 24 23 45 45 H 1.08999 * 109.42335 * 344.28812 * 27 10 8 46 46 H 1.09001 * 109.42820 * 104.18275 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1713 -0.8750 1.2688 7 7 1.3961 -2.1124 1.4412 8 6 1.8765 -2.7927 2.5008 9 8 2.9725 -2.5210 2.9516 10 7 1.1420 -3.7742 3.0608 11 6 1.6815 -4.6113 4.1454 12 6 0.8466 -4.3508 5.3983 13 6 -0.6256 -4.4028 5.0806 14 6 -1.5210 -4.6090 6.1557 15 6 -1.0221 -4.7773 7.4679 16 1 -0.0631 -5.2486 7.6248 17 6 -1.7710 -4.3333 8.5636 18 7 -1.4377 -4.6982 9.7748 19 14 -3.2466 -3.2193 8.2964 20 1 -4.4748 -4.0451 8.1758 21 1 -3.3835 -2.2941 9.4499 22 1 -3.0544 -2.4332 7.0514 23 6 -2.9048 -4.6472 5.9212 24 6 -3.3805 -4.4889 4.6394 25 6 -2.4967 -4.2963 3.5927 26 6 -1.1216 -4.2571 3.8114 27 6 -0.2271 -4.0524 2.6141 28 1 -0.3634 0.0773 1.0247 29 1 -0.3634 0.8489 -0.5793 30 1 -0.3634 -0.9261 -0.4454 31 1 3.1824 1.3084 -0.4455 32 1 1.5812 2.0743 -0.5793 33 1 2.2771 1.7414 1.0247 34 1 3.1724 -0.8756 -1.2678 35 1 1.6126 -1.8599 -1.2679 36 1 0.4939 -2.2790 1.1263 37 1 1.6132 -5.6633 3.8686 38 1 2.7219 -4.3460 4.3336 39 1 1.0798 -5.1069 6.1481 40 1 1.0931 -3.3659 5.7950 41 1 -1.9566 -4.3901 10.5343 42 1 -3.5912 -4.7994 6.7410 43 1 -4.4436 -4.5152 4.4507 44 1 -2.8790 -4.1748 2.5900 45 1 -0.5947 -3.2112 2.0265 46 1 -0.2322 -4.9532 2.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598967979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:53 Heat of formation + Delta-G solvation = 13.282190 kcal Electronic energy + Delta-G solvation = -26317.053254 eV Core-core repulsion = 22785.739633 eV Total energy + Delta-G solvation = -3531.313620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.36419 -38.89770 -37.94301 -35.54855 -33.75851 -33.47484 -31.82993 -30.64553 -29.32338 -28.78160 -27.71955 -25.40067 -24.98284 -23.32533 -22.04513 -20.76667 -20.46608 -19.51396 -18.94323 -17.51757 -17.20870 -16.41928 -15.79393 -15.46703 -14.91469 -14.78099 -14.39420 -14.13764 -14.05953 -13.86093 -13.46436 -13.31258 -13.18510 -12.88803 -12.72510 -12.55403 -12.46241 -12.06151 -11.94183 -11.79067 -11.63679 -11.42400 -11.39342 -11.14489 -10.98446 -10.84105 -10.56754 -10.11683 -10.01116 -9.89966 -9.78060 -9.49316 -9.19022 -8.76659 -8.21040 -7.58362 -7.56651 -6.95235 -4.53485 2.46659 2.52652 2.72344 3.07475 3.19000 3.21220 3.28615 3.73528 3.94475 3.96631 4.41343 4.47167 4.64022 4.71306 4.84633 5.17284 5.23504 5.38059 5.42455 5.47620 5.55273 5.60831 5.65875 5.68309 5.70849 5.71753 5.79064 5.81396 5.88194 5.93419 6.02124 6.07039 6.15506 6.32594 6.48848 6.53470 6.57132 6.73342 6.79727 6.91299 7.09662 7.16572 7.37231 7.56861 7.60882 7.80628 7.97192 8.11814 8.31034 8.57954 8.74677 8.75637 10.06754 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.003543 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.593647 B = 7901.729371 C = 8227.952561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.142 4.142 3 C -0.113 4.113 4 C -0.189 4.189 5 C 0.113 3.887 6 H 0.137 0.863 7 N -0.719 5.719 8 C 0.715 3.285 9 O -0.594 6.594 10 N -0.621 5.621 11 C 0.130 3.870 12 C -0.073 4.073 13 C -0.150 4.150 14 C 0.094 3.906 15 C -0.444 4.444 16 H 0.095 0.905 17 C 0.083 3.917 18 N -0.812 5.812 19 Si 0.914 3.086 20 H -0.272 1.272 21 H -0.294 1.294 22 H -0.245 1.245 23 C -0.240 4.240 24 C -0.077 4.077 25 C -0.237 4.237 26 C -0.071 4.071 27 C 0.162 3.838 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.396 0.604 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.285 0.715 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 6.211 -17.045 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 C -0.171 4.171 4 C -0.228 4.228 5 C 0.006 3.994 6 H 0.155 0.845 7 N -0.374 5.374 8 C 0.417 3.583 9 O -0.472 6.472 10 N -0.357 5.357 11 C 0.008 3.992 12 C -0.111 4.111 13 C -0.151 4.151 14 C 0.091 3.909 15 C -0.473 4.473 16 H 0.113 0.887 17 C -0.136 4.136 18 N -0.437 5.437 19 Si 0.742 3.258 20 H -0.198 1.198 21 H -0.221 1.221 22 H -0.168 1.168 23 C -0.259 4.259 24 C -0.096 4.096 25 C -0.257 4.257 26 C -0.072 4.072 27 C 0.038 3.962 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.229 6.352 -16.386 17.868 hybrid contribution -1.473 0.301 -0.086 1.506 sum 1.756 6.653 -16.472 17.852 Atomic orbital electron populations 1.21324 0.91963 1.01953 1.02336 1.22078 0.95360 0.91984 1.04934 1.21341 0.99880 0.93639 1.02208 1.23795 1.02708 1.00955 0.95364 1.21550 0.96423 0.91202 0.90249 0.84535 1.44602 1.17594 1.42355 1.32860 1.15651 0.83840 0.79096 0.79704 1.90874 1.21411 1.69630 1.65308 1.47236 1.14437 1.34946 1.39118 1.21621 0.98638 0.93066 0.85875 1.20522 0.91958 1.02485 0.96095 1.19305 0.94317 1.09213 0.92269 1.17737 0.90903 0.88973 0.93314 1.19535 1.05910 1.33338 0.88476 0.88691 1.26132 0.97726 0.95168 0.94532 1.69645 1.37905 1.36267 0.99852 0.86293 0.80567 0.80327 0.78656 1.19811 1.22133 1.16842 1.20974 0.95709 1.13409 0.95850 1.20477 0.97338 0.98490 0.93273 1.20171 0.92045 1.16040 0.97401 1.19172 0.93260 1.01815 0.92936 1.20333 0.80442 1.00073 0.95312 0.91793 0.91828 0.92577 0.92278 0.92044 0.91942 0.88151 0.88689 0.76686 0.91490 0.89245 0.89967 0.91663 0.90451 0.88186 0.88765 0.88881 0.91072 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.85 37.15 0.33 -0.70 16 2 C -0.14 -1.31 2.70 -154.47 -0.42 -1.73 16 3 C -0.11 -0.91 9.85 37.16 0.37 -0.55 16 4 C -0.19 -1.69 9.75 -26.69 -0.26 -1.96 16 5 C 0.11 1.32 6.14 -67.93 -0.42 0.90 16 6 H 0.14 1.81 7.39 -51.93 -0.38 1.42 16 7 N -0.72 -9.52 5.25 -58.67 -0.31 -9.83 16 8 C 0.72 12.14 8.32 -86.92 -0.72 11.42 16 9 O -0.59 -11.96 15.42 5.29 0.08 -11.87 16 10 N -0.62 -10.34 2.94 -180.09 -0.53 -10.87 16 11 C 0.13 2.23 6.43 -3.74 -0.02 2.21 16 12 C -0.07 -1.45 5.29 -27.99 -0.15 -1.60 16 13 C -0.15 -3.28 5.82 -103.84 -0.60 -3.88 16 14 C 0.09 2.28 5.13 -106.67 -0.55 1.74 16 15 C -0.44 -11.57 8.80 -37.74 -0.33 -11.90 16 16 H 0.10 2.56 6.55 -52.49 -0.34 2.21 16 17 C 0.08 2.14 5.46 -17.34 -0.09 2.04 16 18 N -0.81 -21.43 13.93 55.55 0.77 -20.65 16 19 Si 0.91 20.82 24.41 -169.99 -4.15 16.67 16 20 H -0.27 -5.99 6.66 56.52 0.38 -5.61 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.25 -5.76 6.71 56.52 0.38 -5.38 16 23 C -0.24 -5.62 7.01 -38.98 -0.27 -5.89 16 24 C -0.08 -1.60 10.03 -39.76 -0.40 -2.00 16 25 C -0.24 -4.52 9.63 -39.15 -0.38 -4.89 16 26 C -0.07 -1.37 5.82 -104.59 -0.61 -1.98 16 27 C 0.16 2.47 6.06 -5.03 -0.03 2.44 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 30 H 0.06 0.44 7.61 -51.93 -0.40 0.05 16 31 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 32 H 0.06 0.43 7.92 -51.92 -0.41 0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.40 4.52 5.36 -40.82 -0.22 4.30 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.54 7.10 -51.92 -0.37 1.17 16 39 H 0.08 1.66 6.47 -51.92 -0.34 1.32 16 40 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.29 6.86 8.30 -40.82 -0.34 6.52 16 42 H 0.10 2.36 4.45 -52.49 -0.23 2.12 16 43 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.09 1.49 8.05 -52.49 -0.42 1.07 16 45 H 0.07 0.93 5.98 -51.93 -0.31 0.62 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -29.12 359.36 -10.08 -39.20 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.80 Total: 8.27 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -4.56 Total: -16.33 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.06 Total: -41.35 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.15 Total: 16.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.12 -10.08 -39.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598967979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.481 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds