Wall clock time and date at job start Tue Mar 31 2020 11:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 115.56341 * 2 1 4 4 C 1.53074 * 117.51805 * 214.29441 * 2 1 3 5 5 C 1.53005 * 117.50022 * 145.68264 * 2 1 3 6 6 H 1.09000 * 117.50264 * 215.00624 * 5 2 1 7 7 N 1.46500 * 117.49605 * 0.02562 * 5 2 1 8 8 C 1.34777 * 119.99896 * 204.91104 * 7 5 2 9 9 O 1.21585 * 120.00065 * 4.95036 * 8 7 5 10 10 N 1.34774 * 120.00384 * 184.94648 * 8 7 5 11 11 C 1.47245 * 121.35865 * 174.81578 * 10 8 7 12 12 C 1.52792 * 107.87359 * 115.86882 * 11 10 8 13 13 C 1.50701 * 110.79457 * 47.37484 * 12 11 10 14 14 C 1.41421 * 117.60005 * 160.29451 * 13 12 11 15 15 C 1.41390 * 119.96404 * 359.06356 * 14 13 12 16 16 H 1.08000 * 120.00399 * 328.24639 * 15 14 13 17 17 C 1.39949 * 120.00119 * 148.25063 * 15 14 13 18 18 N 1.30817 * 120.00307 * 167.56117 * 17 15 14 19 19 Si 1.86809 * 119.99481 * 347.55921 * 17 15 14 20 20 H 1.48498 * 109.47006 * 92.52285 * 19 17 15 21 21 H 1.48504 * 109.46480 * 212.51746 * 19 17 15 22 22 H 1.48493 * 109.47170 * 332.51760 * 19 17 15 23 23 C 1.40403 * 120.06859 * 179.08754 * 14 13 12 24 24 C 1.37646 * 119.53990 * 0.29420 * 23 14 13 25 25 C 1.38338 * 119.98749 * 0.11954 * 24 23 14 26 26 C 1.37046 * 123.03264 * 340.12881 * 13 12 11 27 27 C 1.46676 * 121.35014 * 354.84504 * 10 8 7 28 28 H 1.09002 * 109.47462 * 274.31554 * 1 2 3 29 29 H 1.09004 * 109.47274 * 34.31025 * 1 2 3 30 30 H 1.08995 * 109.47374 * 154.31383 * 1 2 3 31 31 H 1.09001 * 109.47354 * 205.68886 * 3 2 1 32 32 H 1.09008 * 109.47241 * 325.68769 * 3 2 1 33 33 H 1.08998 * 109.47298 * 85.68113 * 3 2 1 34 34 H 1.08998 * 117.49586 * 145.03756 * 4 2 1 35 35 H 1.09005 * 117.52578 * 359.97438 * 4 2 1 36 36 H 0.97000 * 120.00022 * 24.90138 * 7 5 2 37 37 H 1.08998 * 109.79485 * 235.48599 * 11 10 8 38 38 H 1.09011 * 109.78434 * 356.26444 * 11 10 8 39 39 H 1.09008 * 109.19827 * 167.77197 * 12 11 10 40 40 H 1.08999 * 109.20025 * 287.05873 * 12 11 10 41 41 H 0.97007 * 120.00301 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.23374 * 180.31297 * 23 14 13 43 43 H 1.07995 * 120.00567 * 180.10958 * 24 23 14 44 44 H 1.07997 * 119.46954 * 179.88817 * 25 24 23 45 45 H 1.08999 * 109.42335 * 344.28812 * 27 10 8 46 46 H 1.09001 * 109.42820 * 104.18275 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 3.1713 -0.8750 1.2688 7 7 1.3961 -2.1124 1.4412 8 6 1.8765 -2.7927 2.5008 9 8 2.9725 -2.5210 2.9516 10 7 1.1420 -3.7742 3.0608 11 6 1.6815 -4.6113 4.1454 12 6 0.8466 -4.3508 5.3983 13 6 -0.6256 -4.4028 5.0806 14 6 -1.5210 -4.6090 6.1557 15 6 -1.0221 -4.7773 7.4679 16 1 -0.0631 -5.2486 7.6248 17 6 -1.7710 -4.3333 8.5636 18 7 -1.4377 -4.6982 9.7748 19 14 -3.2466 -3.2193 8.2964 20 1 -4.4748 -4.0451 8.1758 21 1 -3.3835 -2.2941 9.4499 22 1 -3.0544 -2.4332 7.0514 23 6 -2.9048 -4.6472 5.9212 24 6 -3.3805 -4.4889 4.6394 25 6 -2.4967 -4.2963 3.5927 26 6 -1.1216 -4.2571 3.8114 27 6 -0.2271 -4.0524 2.6141 28 1 -0.3634 0.0773 1.0247 29 1 -0.3634 0.8489 -0.5793 30 1 -0.3634 -0.9261 -0.4454 31 1 3.1824 1.3084 -0.4455 32 1 1.5812 2.0743 -0.5793 33 1 2.2771 1.7414 1.0247 34 1 3.1724 -0.8756 -1.2678 35 1 1.6126 -1.8599 -1.2679 36 1 0.4939 -2.2790 1.1263 37 1 1.6132 -5.6633 3.8686 38 1 2.7219 -4.3460 4.3336 39 1 1.0798 -5.1069 6.1481 40 1 1.0931 -3.3659 5.7950 41 1 -1.9566 -4.3901 10.5343 42 1 -3.5912 -4.7994 6.7410 43 1 -4.4436 -4.5152 4.4507 44 1 -2.8790 -4.1748 2.5900 45 1 -0.5947 -3.2112 2.0265 46 1 -0.2322 -4.9532 2.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598967979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:52 Heat of formation + Delta-G solvation = -2.877699 kcal Electronic energy + Delta-G solvation = -26317.753999 eV Core-core repulsion = 22785.739633 eV Total energy + Delta-G solvation = -3532.014366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63622 -40.20891 -39.11484 -37.03811 -35.51265 -34.74207 -33.36523 -32.20201 -30.73841 -29.69664 -28.37488 -27.01901 -26.55945 -24.73522 -23.11739 -22.41024 -21.86302 -20.63137 -20.00475 -19.08167 -18.71255 -17.73760 -17.31661 -16.89575 -16.30336 -15.93770 -15.84768 -15.63428 -15.18172 -14.98409 -14.72267 -14.61295 -14.57789 -14.23863 -13.88334 -13.66812 -13.53337 -13.36654 -13.22660 -13.10939 -12.98113 -12.67721 -12.62985 -12.57288 -12.25845 -12.07724 -12.01664 -11.77470 -11.62164 -11.37751 -11.20406 -10.97327 -10.69055 -9.93806 -9.43619 -9.29757 -9.19420 -8.85501 -6.47531 0.78218 0.80125 1.22803 1.37709 1.44875 1.53872 2.00548 2.09795 2.60847 2.83737 2.90167 3.42731 3.68997 3.85064 3.91588 3.96195 4.04694 4.18363 4.21635 4.26571 4.39243 4.48823 4.53279 4.60473 4.71303 4.78185 4.78730 4.87974 4.92144 4.92192 4.97631 5.04579 5.05821 5.08462 5.11765 5.15344 5.28539 5.30121 5.42752 5.44696 5.58466 5.66585 5.82402 5.91557 5.97775 6.01449 6.27288 6.43237 6.77260 6.86060 6.91219 7.49330 8.22660 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.003543 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.593647 B = 7901.729371 C = 8227.952561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.131 4.131 3 C -0.116 4.116 4 C -0.167 4.167 5 C 0.078 3.922 6 H 0.112 0.888 7 N -0.703 5.703 8 C 0.710 3.290 9 O -0.634 6.634 10 N -0.624 5.624 11 C 0.140 3.860 12 C -0.066 4.066 13 C -0.166 4.166 14 C 0.069 3.931 15 C -0.477 4.477 16 H 0.063 0.937 17 C 0.043 3.957 18 N -0.860 5.860 19 Si 0.967 3.033 20 H -0.259 1.259 21 H -0.286 1.286 22 H -0.256 1.256 23 C -0.257 4.257 24 C -0.087 4.087 25 C -0.210 4.210 26 C -0.073 4.073 27 C 0.163 3.837 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.408 0.592 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.290 0.710 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.142 0.858 45 H 0.103 0.897 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 7.130 -21.995 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 C -0.173 4.173 4 C -0.205 4.205 5 C -0.029 4.029 6 H 0.130 0.870 7 N -0.358 5.358 8 C 0.411 3.589 9 O -0.515 6.515 10 N -0.360 5.360 11 C 0.017 3.983 12 C -0.104 4.104 13 C -0.168 4.168 14 C 0.067 3.933 15 C -0.507 4.507 16 H 0.081 0.919 17 C -0.170 4.170 18 N -0.488 5.488 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.214 1.214 22 H -0.180 1.180 23 C -0.276 4.276 24 C -0.105 4.105 25 C -0.230 4.230 26 C -0.074 4.074 27 C 0.041 3.959 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.247 0.753 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.146 0.854 44 H 0.160 0.840 45 H 0.121 0.879 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.228 7.279 -21.382 22.621 hybrid contribution -0.834 0.038 1.164 1.433 sum 0.393 7.316 -20.218 21.505 Atomic orbital electron populations 1.21370 0.91152 1.03340 1.01878 1.22189 0.95972 0.92000 1.03136 1.21390 1.00638 0.93384 1.01899 1.23857 1.03328 1.00468 0.92874 1.21638 0.96334 0.92982 0.91929 0.86970 1.44431 1.18078 1.41680 1.31598 1.15841 0.83467 0.79181 0.80363 1.90849 1.23320 1.70712 1.66644 1.47229 1.15111 1.34807 1.38834 1.21455 0.97623 0.94339 0.84933 1.20398 0.92162 1.00514 0.97336 1.19604 0.94594 1.09366 0.93187 1.17930 0.92186 0.89999 0.93214 1.19516 1.05367 1.35663 0.90190 0.91895 1.26762 0.99912 0.96111 0.94211 1.69693 1.39851 1.38688 1.00531 0.85484 0.78475 0.78825 0.77996 1.18430 1.21389 1.17976 1.21119 0.95046 1.14101 0.97348 1.20918 0.99609 0.97654 0.92276 1.20780 0.91431 1.11542 0.99205 1.19674 0.94668 0.99823 0.93209 1.20551 0.78687 1.02906 0.93764 0.93134 0.90421 0.91292 0.91536 0.90524 0.93072 0.86957 0.87378 0.75327 0.89411 0.89844 0.91582 0.94225 0.89974 0.89009 0.85425 0.84021 0.87901 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.85 71.98 0.64 -0.98 16 2 C -0.13 -2.04 2.70 -52.16 -0.14 -2.18 16 3 C -0.12 -1.60 9.85 71.98 0.71 -0.89 16 4 C -0.17 -2.40 9.75 30.62 0.30 -2.10 16 5 C 0.08 1.67 6.14 44.99 0.28 1.94 16 6 H 0.11 2.97 7.39 -2.39 -0.02 2.95 16 7 N -0.70 -16.75 5.25 -457.80 -2.40 -19.15 16 8 C 0.71 23.09 8.32 179.05 1.49 24.58 16 9 O -0.63 -25.73 15.42 -3.98 -0.06 -25.79 16 10 N -0.62 -19.45 2.94 -841.95 -2.47 -21.92 16 11 C 0.14 4.75 6.43 86.17 0.55 5.30 16 12 C -0.07 -2.76 5.29 29.78 0.16 -2.60 16 13 C -0.17 -7.26 5.82 -19.36 -0.11 -7.37 16 14 C 0.07 3.44 5.13 -21.19 -0.11 3.33 16 15 C -0.48 -26.61 8.80 23.46 0.21 -26.40 16 16 H 0.06 3.75 6.55 -2.91 -0.02 3.74 16 17 C 0.04 2.33 5.46 85.26 0.47 2.80 16 18 N -0.86 -48.35 13.93 21.83 0.30 -48.05 16 19 Si 0.97 44.14 24.41 68.60 1.67 45.82 16 20 H -0.26 -11.09 6.66 99.48 0.66 -10.42 16 21 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.26 -11.91 6.71 99.48 0.67 -11.24 16 23 C -0.26 -11.80 7.01 22.66 0.16 -11.64 16 24 C -0.09 -3.24 10.03 22.15 0.22 -3.02 16 25 C -0.21 -6.89 9.63 22.55 0.22 -6.68 16 26 C -0.07 -2.57 5.82 -19.84 -0.12 -2.69 16 27 C 0.16 4.22 6.06 85.65 0.52 4.74 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.85 7.92 -2.39 -0.02 0.83 16 30 H 0.07 0.75 7.61 -2.39 -0.02 0.73 16 31 H 0.07 0.81 7.90 -2.39 -0.02 0.79 16 32 H 0.08 0.83 7.92 -2.38 -0.02 0.81 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 1.37 8.05 -2.39 -0.02 1.35 16 35 H 0.11 1.32 8.05 -2.38 -0.02 1.30 16 36 H 0.41 7.53 5.36 -92.71 -0.50 7.03 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.08 2.94 7.10 -2.38 -0.02 2.92 16 39 H 0.07 2.91 6.47 -2.38 -0.02 2.90 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.29 14.80 8.30 -92.70 -0.77 14.04 16 42 H 0.09 4.30 4.45 -2.91 -0.01 4.29 16 43 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 44 H 0.14 3.37 8.05 -2.91 -0.02 3.35 16 45 H 0.10 2.05 5.98 -2.39 -0.01 2.04 16 46 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -68.23 359.36 2.90 -65.33 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.42 Total: 27.61 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 5.43 Total: -23.85 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -4.57 Total: -89.11 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.06 Total: -25.79 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.82 kcal Total: -68.23 2.90 -65.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598967979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.452 kcal (2) G-P(sol) polarization free energy of solvation -68.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds