Wall clock time and date at job start Tue Mar 31 2020 11:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.27926 * 126.60438 * 2 1 4 4 N 1.39146 * 113.21402 * 179.97438 * 3 2 1 5 5 C 1.39991 * 124.44027 * 180.02562 * 4 3 2 6 6 C 1.38892 * 120.07113 * 179.74800 * 5 4 3 7 7 C 1.38100 * 119.92546 * 179.69643 * 6 5 4 8 8 C 1.38293 * 120.07085 * 0.57464 * 7 6 5 9 9 C 1.50703 * 119.92745 * 179.70010 * 8 7 6 10 10 C 1.53004 * 109.47138 * 240.02295 * 9 8 7 11 11 C 1.53005 * 109.46893 * 0.02562 * 9 8 7 12 12 C 1.52993 * 109.47037 * 120.01925 * 9 8 7 13 13 C 1.38280 * 120.14559 * 359.72092 * 8 7 6 14 14 C 1.38112 * 120.07288 * 359.97438 * 13 8 7 15 15 C 1.34959 * 111.12293 * 0.09444 * 4 3 2 16 16 O 1.21290 * 127.50174 * 180.02562 * 15 4 3 17 17 C 1.51435 * 126.41678 * 180.12253 * 2 1 3 18 18 H 1.09004 * 110.60564 * 298.62332 * 17 2 1 19 19 C 1.52997 * 110.61192 * 61.43846 * 17 2 1 20 20 C 1.50694 * 109.47460 * 182.84954 * 19 17 2 21 21 H 1.08002 * 120.00179 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00472 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99350 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00608 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47339 * 179.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 300.00306 * 24 22 20 27 27 H 1.48504 * 109.46636 * 59.99865 * 24 22 20 28 28 H 1.09004 * 109.47037 * 269.88254 * 1 2 3 29 29 H 1.08992 * 109.47152 * 29.87915 * 1 2 3 30 30 H 1.08997 * 109.47011 * 149.88069 * 1 2 3 31 31 H 1.07993 * 120.03476 * 359.97306 * 6 5 4 32 32 H 1.08003 * 119.96841 * 180.31849 * 7 6 5 33 33 H 1.08999 * 109.46706 * 60.00093 * 10 9 8 34 34 H 1.09000 * 109.46719 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.46602 * 300.00080 * 10 9 8 36 36 H 1.09000 * 109.47281 * 60.00474 * 11 9 8 37 37 H 1.09004 * 109.46796 * 179.97438 * 11 9 8 38 38 H 1.08997 * 109.47223 * 299.99889 * 11 9 8 39 39 H 1.09004 * 109.47447 * 60.00356 * 12 9 8 40 40 H 1.09004 * 109.47144 * 179.97438 * 12 9 8 41 41 H 1.09000 * 109.47720 * 299.99883 * 12 9 8 42 42 H 1.08000 * 119.96983 * 179.97438 * 13 8 7 43 43 H 1.08000 * 120.03748 * 180.02562 * 14 13 8 44 44 H 1.09005 * 109.46800 * 62.85425 * 19 17 2 45 45 H 1.08998 * 109.47382 * 302.85224 * 19 17 2 46 46 H 0.97005 * 119.99661 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2698 1.0270 0.0000 4 7 3.6235 0.7047 0.0006 5 6 4.6610 1.6445 0.0012 6 6 5.9838 1.2209 0.0070 7 6 7.0050 2.1505 0.0013 8 6 6.7117 3.5020 0.0018 9 6 7.8287 4.5137 0.0024 10 6 7.7226 5.3898 1.2522 11 6 9.1751 3.7869 0.0017 12 6 7.7224 5.3914 -1.2463 13 6 5.3959 3.9271 0.0022 14 6 4.3699 3.0025 0.0015 15 6 3.8051 -0.6326 -0.0011 16 8 4.8579 -1.2348 -0.0007 17 6 2.4060 -1.2186 -0.0026 18 1 2.2405 -1.8194 0.8917 19 6 2.1748 -2.0558 -1.2622 20 6 3.0296 -3.2956 -1.2053 21 1 3.6738 -3.4689 -0.3559 22 6 2.9902 -4.2082 -2.2381 23 7 2.2062 -3.9969 -3.2726 24 14 4.0504 -5.7446 -2.1680 25 1 3.8258 -6.5571 -3.3904 26 1 5.4812 -5.3555 -2.0875 27 1 3.6863 -6.5428 -0.9698 28 1 -0.3633 -0.0021 1.0277 29 1 -0.3633 0.8910 -0.5119 30 1 -0.3633 -0.8889 -0.5157 31 1 6.2134 0.1656 0.0115 32 1 8.0338 1.8218 0.0006 33 1 7.7984 4.7644 2.1417 34 1 8.5308 6.1213 1.2528 35 1 6.7634 5.9075 1.2526 36 1 9.2507 3.1629 -0.8888 37 1 9.9830 4.5187 0.0016 38 1 9.2509 3.1615 0.8912 39 1 6.7632 5.9092 -1.2459 40 1 8.5300 6.1235 -1.2456 41 1 7.7980 4.7673 -2.1367 42 1 5.1701 4.9832 0.0030 43 1 3.3424 3.3352 0.0014 44 1 2.4422 -1.4702 -2.1418 45 1 1.1245 -2.3411 -1.3211 46 1 2.1787 -4.6387 -3.9994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601934054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:34 Heat of formation + Delta-G solvation = 29.350720 kcal Electronic energy + Delta-G solvation = -25954.748387 eV Core-core repulsion = 22424.131550 eV Total energy + Delta-G solvation = -3530.616837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24221 -39.58681 -37.09465 -36.53718 -33.95889 -32.76109 -31.01550 -30.49163 -29.74943 -27.54356 -27.38339 -27.34089 -26.00395 -23.36927 -22.48827 -21.93841 -19.95587 -19.56765 -19.08200 -17.61675 -16.38059 -15.88590 -15.68941 -15.16224 -14.80144 -14.51762 -14.40025 -14.33987 -13.98759 -13.65402 -13.44217 -13.38801 -13.16024 -12.88074 -12.72235 -12.46528 -12.28410 -12.23794 -12.04599 -11.83222 -11.65099 -11.56878 -11.43967 -11.38628 -11.07300 -10.93439 -10.76744 -10.65653 -10.53100 -10.30732 -9.69912 -9.46861 -9.28785 -8.86048 -8.78580 -8.41789 -7.54106 -6.08025 -4.10088 1.38822 1.56330 1.98923 2.62131 3.09977 3.34045 3.37383 3.43102 4.02000 4.25123 4.40868 4.54004 4.59619 4.66800 4.88546 5.11758 5.15730 5.21869 5.24093 5.30851 5.41551 5.46385 5.57016 5.61851 5.61902 5.63503 5.67146 5.72620 5.76632 5.84851 5.86585 5.88446 5.92924 5.99062 6.14849 6.17360 6.19050 6.30060 6.42994 6.51008 6.69790 6.77012 6.81367 7.24179 7.32649 7.38128 7.89732 8.00703 8.20875 8.34317 8.94725 9.54873 11.03127 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.003428 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.532129 B = 8166.356541 C = 9401.563149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.117 3.883 3 N -0.261 5.261 4 N -0.425 5.425 5 C 0.182 3.818 6 C -0.154 4.154 7 C -0.093 4.093 8 C -0.103 4.103 9 C -0.025 4.025 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.138 4.138 13 C -0.094 4.094 14 C -0.137 4.137 15 C 0.510 3.490 16 O -0.465 6.465 17 C -0.132 4.132 18 H 0.128 0.872 19 C 0.055 3.945 20 C -0.519 4.519 21 H 0.065 0.935 22 C 0.061 3.939 23 N -0.897 5.897 24 Si 0.896 3.104 25 H -0.287 1.287 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.122 0.878 43 H 0.132 0.868 44 H 0.020 0.980 45 H 0.041 0.959 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 17.611 7.720 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 N -0.067 5.067 4 N -0.235 5.235 5 C 0.089 3.911 6 C -0.175 4.175 7 C -0.111 4.111 8 C -0.104 4.104 9 C -0.025 4.025 10 C -0.194 4.194 11 C -0.202 4.202 12 C -0.195 4.195 13 C -0.113 4.113 14 C -0.158 4.158 15 C 0.299 3.701 16 O -0.334 6.334 17 C -0.155 4.155 18 H 0.145 0.855 19 C 0.017 3.983 20 C -0.558 4.558 21 H 0.083 0.917 22 C -0.141 4.141 23 N -0.536 5.536 24 Si 0.724 3.276 25 H -0.213 1.213 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.170 0.830 32 H 0.147 0.853 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.817 18.183 7.552 20.270 hybrid contribution 0.598 -1.653 -0.147 1.764 sum 5.415 16.531 7.405 18.905 Atomic orbital electron populations 1.20378 0.84705 1.04790 1.03644 1.25728 0.97532 0.91742 0.92510 1.74726 0.87826 1.26627 1.17531 1.47171 1.02588 1.05958 1.67759 1.17709 0.85827 0.88409 0.99182 1.21547 0.90194 1.02571 1.03223 1.20972 0.98910 0.91903 0.99350 1.19716 0.93932 0.93763 1.02998 1.19420 0.93214 0.93963 0.95904 1.21885 1.01640 0.99021 0.96892 1.21970 0.95697 1.00324 1.02208 1.21891 1.01645 0.99027 0.96960 1.20707 0.91647 0.98869 1.00046 1.20799 1.00186 0.90643 1.04151 1.21561 0.92442 0.81174 0.74885 1.90626 1.31008 1.65503 1.46298 1.22120 0.89988 0.96508 1.06931 0.85504 1.18931 0.98807 0.93290 0.87304 1.21121 1.24449 1.04385 1.05799 0.91704 1.24953 0.95492 0.98464 0.95173 1.69941 1.38454 1.36570 1.08589 0.86570 0.81164 0.82570 0.77288 1.21301 1.20071 1.20083 0.89511 0.90096 0.88614 0.83032 0.85335 0.92533 0.92620 0.92495 0.92158 0.92585 0.92226 0.92488 0.92619 0.92433 0.86047 0.85042 0.96135 0.94101 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.49 36.01 0.38 -0.51 16 2 C 0.12 1.93 6.96 -78.58 -0.55 1.39 16 3 N -0.26 -4.67 11.21 35.75 0.40 -4.27 16 4 N -0.43 -8.46 3.73 -9.48 -0.04 -8.49 16 5 C 0.18 3.33 6.66 -83.65 -0.56 2.77 16 6 C -0.15 -2.74 9.35 -39.39 -0.37 -3.10 16 7 C -0.09 -1.33 8.97 -39.61 -0.36 -1.69 16 8 C -0.10 -1.31 4.76 -104.58 -0.50 -1.80 16 9 C -0.02 -0.24 0.85 -155.66 -0.13 -0.38 16 10 C -0.14 -1.18 8.29 37.16 0.31 -0.87 16 11 C -0.14 -1.31 7.13 37.16 0.26 -1.04 16 12 C -0.14 -1.24 8.29 37.15 0.31 -0.93 16 13 C -0.09 -1.22 8.70 -39.61 -0.34 -1.56 16 14 C -0.14 -2.12 9.62 -39.39 -0.38 -2.49 16 15 C 0.51 11.33 7.44 -10.42 -0.08 11.25 16 16 O -0.47 -11.45 14.10 5.55 0.08 -11.37 16 17 C -0.13 -2.67 2.98 -92.08 -0.27 -2.95 16 18 H 0.13 2.39 8.14 -51.93 -0.42 1.97 16 19 C 0.05 1.34 4.49 -27.89 -0.13 1.22 16 20 C -0.52 -14.45 8.39 -34.44 -0.29 -14.74 16 21 H 0.06 1.83 7.24 -52.49 -0.38 1.45 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 23 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 24 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.11 7.49 -51.93 -0.39 0.72 16 31 H 0.15 3.00 5.35 -52.49 -0.28 2.72 16 32 H 0.13 1.59 5.88 -52.48 -0.31 1.29 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 36 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 39 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.12 1.26 7.09 -52.49 -0.37 0.89 16 43 H 0.13 1.94 7.61 -52.49 -0.40 1.54 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.04 0.98 7.50 -51.93 -0.39 0.59 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -32.22 371.52 -8.03 -40.26 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.01 Total: 0.63 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.79 Total: -13.82 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 1.10 Total: -38.30 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.22 -8.03 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601934054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.607 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds