Wall clock time and date at job start Tue Mar 31 2020 11:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.27926 * 126.60438 * 2 1 4 4 N 1.39146 * 113.21402 * 179.97438 * 3 2 1 5 5 C 1.39991 * 124.44027 * 180.02562 * 4 3 2 6 6 C 1.38892 * 120.07113 * 179.74800 * 5 4 3 7 7 C 1.38100 * 119.92546 * 179.69643 * 6 5 4 8 8 C 1.38293 * 120.07085 * 0.57464 * 7 6 5 9 9 C 1.50703 * 119.92745 * 179.70010 * 8 7 6 10 10 C 1.53004 * 109.47138 * 240.02295 * 9 8 7 11 11 C 1.53005 * 109.46893 * 0.02562 * 9 8 7 12 12 C 1.52993 * 109.47037 * 120.01925 * 9 8 7 13 13 C 1.38280 * 120.14559 * 359.72092 * 8 7 6 14 14 C 1.38112 * 120.07288 * 359.97438 * 13 8 7 15 15 C 1.34959 * 111.12293 * 0.09444 * 4 3 2 16 16 O 1.21290 * 127.50174 * 180.02562 * 15 4 3 17 17 C 1.51435 * 126.41678 * 180.12253 * 2 1 3 18 18 H 1.09004 * 110.60564 * 298.62332 * 17 2 1 19 19 C 1.52997 * 110.61192 * 61.43846 * 17 2 1 20 20 C 1.50694 * 109.47460 * 182.84954 * 19 17 2 21 21 H 1.08002 * 120.00179 * 359.97438 * 20 19 17 22 22 C 1.37879 * 120.00472 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99350 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00608 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47339 * 179.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 300.00306 * 24 22 20 27 27 H 1.48504 * 109.46636 * 59.99865 * 24 22 20 28 28 H 1.09004 * 109.47037 * 269.88254 * 1 2 3 29 29 H 1.08992 * 109.47152 * 29.87915 * 1 2 3 30 30 H 1.08997 * 109.47011 * 149.88069 * 1 2 3 31 31 H 1.07993 * 120.03476 * 359.97306 * 6 5 4 32 32 H 1.08003 * 119.96841 * 180.31849 * 7 6 5 33 33 H 1.08999 * 109.46706 * 60.00093 * 10 9 8 34 34 H 1.09000 * 109.46719 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.46602 * 300.00080 * 10 9 8 36 36 H 1.09000 * 109.47281 * 60.00474 * 11 9 8 37 37 H 1.09004 * 109.46796 * 179.97438 * 11 9 8 38 38 H 1.08997 * 109.47223 * 299.99889 * 11 9 8 39 39 H 1.09004 * 109.47447 * 60.00356 * 12 9 8 40 40 H 1.09004 * 109.47144 * 179.97438 * 12 9 8 41 41 H 1.09000 * 109.47720 * 299.99883 * 12 9 8 42 42 H 1.08000 * 119.96983 * 179.97438 * 13 8 7 43 43 H 1.08000 * 120.03748 * 180.02562 * 14 13 8 44 44 H 1.09005 * 109.46800 * 62.85425 * 19 17 2 45 45 H 1.08998 * 109.47382 * 302.85224 * 19 17 2 46 46 H 0.97005 * 119.99661 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2698 1.0270 0.0000 4 7 3.6235 0.7047 0.0006 5 6 4.6610 1.6445 0.0012 6 6 5.9838 1.2209 0.0070 7 6 7.0050 2.1505 0.0013 8 6 6.7117 3.5020 0.0018 9 6 7.8287 4.5137 0.0024 10 6 7.7226 5.3898 1.2522 11 6 9.1751 3.7869 0.0017 12 6 7.7224 5.3914 -1.2463 13 6 5.3959 3.9271 0.0022 14 6 4.3699 3.0025 0.0015 15 6 3.8051 -0.6326 -0.0011 16 8 4.8579 -1.2348 -0.0007 17 6 2.4060 -1.2186 -0.0026 18 1 2.2405 -1.8194 0.8917 19 6 2.1748 -2.0558 -1.2622 20 6 3.0296 -3.2956 -1.2053 21 1 3.6738 -3.4689 -0.3559 22 6 2.9902 -4.2082 -2.2381 23 7 2.2062 -3.9969 -3.2726 24 14 4.0504 -5.7446 -2.1680 25 1 3.8258 -6.5571 -3.3904 26 1 5.4812 -5.3555 -2.0875 27 1 3.6863 -6.5428 -0.9698 28 1 -0.3633 -0.0021 1.0277 29 1 -0.3633 0.8910 -0.5119 30 1 -0.3633 -0.8889 -0.5157 31 1 6.2134 0.1656 0.0115 32 1 8.0338 1.8218 0.0006 33 1 7.7984 4.7644 2.1417 34 1 8.5308 6.1213 1.2528 35 1 6.7634 5.9075 1.2526 36 1 9.2507 3.1629 -0.8888 37 1 9.9830 4.5187 0.0016 38 1 9.2509 3.1615 0.8912 39 1 6.7632 5.9092 -1.2459 40 1 8.5300 6.1235 -1.2456 41 1 7.7980 4.7673 -2.1367 42 1 5.1701 4.9832 0.0030 43 1 3.3424 3.3352 0.0014 44 1 2.4422 -1.4702 -2.1418 45 1 1.1245 -2.3411 -1.3211 46 1 2.1787 -4.6387 -3.9994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601934054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:33 Heat of formation + Delta-G solvation = 12.080788 kcal Electronic energy + Delta-G solvation = -25955.497267 eV Core-core repulsion = 22424.131550 eV Total energy + Delta-G solvation = -3531.365717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.74724 -40.69090 -38.73124 -37.61446 -35.70175 -34.41005 -32.33338 -32.16113 -30.85823 -28.76259 -28.22404 -28.04787 -27.77590 -25.02503 -23.65714 -23.49082 -21.50600 -20.81600 -20.18122 -19.10811 -18.37144 -17.38219 -16.89562 -16.65754 -16.39075 -16.15668 -15.66828 -15.36424 -15.13353 -14.77689 -14.63636 -14.59031 -14.36522 -14.26517 -14.01219 -13.78704 -13.55242 -13.34464 -13.26758 -13.18965 -12.85692 -12.78592 -12.68404 -12.61485 -12.50498 -12.43015 -12.14735 -11.82100 -11.70349 -11.64110 -11.43746 -11.26512 -10.69406 -10.66766 -10.46070 -9.98504 -8.87870 -8.26461 -6.34422 0.13117 0.36231 0.52505 1.19428 1.35066 1.38540 1.46370 1.59371 2.37079 2.78180 2.81204 3.08658 3.12793 3.66630 3.73056 3.80703 3.96895 4.11967 4.14843 4.20593 4.32661 4.40490 4.42890 4.50505 4.58486 4.73667 4.81293 4.83331 4.86184 4.92698 4.93539 5.00300 5.03484 5.06995 5.08605 5.21938 5.24522 5.27601 5.33803 5.35800 5.41990 5.47421 5.49080 5.57959 5.68474 5.70736 5.99998 6.09039 6.54346 6.71889 6.77478 7.33546 8.84544 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.003428 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.532129 B = 8166.356541 C = 9401.563149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.134 3.866 3 N -0.268 5.268 4 N -0.428 5.428 5 C 0.143 3.857 6 C -0.178 4.178 7 C -0.095 4.095 8 C -0.090 4.090 9 C -0.025 4.025 10 C -0.136 4.136 11 C -0.147 4.147 12 C -0.137 4.137 13 C -0.085 4.085 14 C -0.136 4.136 15 C 0.493 3.507 16 O -0.508 6.508 17 C -0.134 4.134 18 H 0.141 0.859 19 C 0.068 3.932 20 C -0.535 4.535 21 H 0.053 0.947 22 C 0.011 3.989 23 N -0.925 5.925 24 Si 0.954 3.046 25 H -0.276 1.276 26 H -0.284 1.284 27 H -0.261 1.261 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.157 0.843 43 H 0.139 0.861 44 H -0.016 1.016 45 H 0.047 0.953 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 20.016 8.495 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 N -0.074 5.074 4 N -0.237 5.237 5 C 0.051 3.949 6 C -0.199 4.199 7 C -0.114 4.114 8 C -0.091 4.091 9 C -0.025 4.025 10 C -0.193 4.193 11 C -0.204 4.204 12 C -0.195 4.195 13 C -0.103 4.103 14 C -0.156 4.156 15 C 0.283 3.717 16 O -0.380 6.380 17 C -0.158 4.158 18 H 0.158 0.842 19 C 0.030 3.970 20 C -0.573 4.573 21 H 0.072 0.928 22 C -0.188 4.188 23 N -0.565 5.565 24 Si 0.780 3.220 25 H -0.201 1.201 26 H -0.210 1.210 27 H -0.185 1.185 28 H 0.140 0.860 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.174 0.826 43 H 0.157 0.843 44 H 0.002 0.998 45 H 0.065 0.935 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.610 20.625 8.336 22.719 hybrid contribution 0.714 -2.288 -0.384 2.427 sum 5.324 18.338 7.952 20.684 Atomic orbital electron populations 1.20664 0.80646 1.05797 1.06181 1.26392 0.99328 0.89167 0.90803 1.74768 0.86887 1.26658 1.19041 1.47230 1.03744 1.05447 1.67235 1.18054 0.85567 0.89416 1.01907 1.21458 0.91344 1.01793 1.05302 1.21176 0.98800 0.92445 0.98941 1.20143 0.95172 0.93606 1.00198 1.19522 0.92133 0.93509 0.97308 1.21882 1.02851 0.98995 0.95539 1.21993 0.96005 1.00705 1.01715 1.21896 1.02867 0.99026 0.95664 1.21093 0.90997 1.00103 0.98146 1.20970 1.01336 0.89595 1.03680 1.21906 0.92616 0.82374 0.74837 1.90586 1.32321 1.66636 1.48479 1.22009 0.90448 0.97858 1.05438 0.84193 1.18636 0.98303 0.92268 0.87840 1.21426 1.24616 1.05734 1.05547 0.92837 1.25733 0.96698 1.01418 0.94919 1.70026 1.39678 1.37651 1.09132 0.85658 0.78778 0.79409 0.78194 1.20106 1.21024 1.18518 0.85976 0.88013 0.88522 0.86135 0.83901 0.93266 0.90713 0.91825 0.92912 0.90646 0.92563 0.91843 0.90652 0.93609 0.82559 0.84302 0.99814 0.93520 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.54 10.49 71.24 0.75 -0.79 16 2 C 0.13 4.38 6.96 46.78 0.33 4.71 16 3 N -0.27 -9.55 11.21 -40.67 -0.46 -10.00 16 4 N -0.43 -17.71 3.73 -302.19 -1.13 -18.84 16 5 C 0.14 5.41 6.66 38.15 0.25 5.67 16 6 C -0.18 -6.71 9.35 22.39 0.21 -6.50 16 7 C -0.10 -2.78 8.97 22.25 0.20 -2.58 16 8 C -0.09 -2.15 4.76 -19.84 -0.09 -2.25 16 9 C -0.02 -0.42 0.85 -52.93 -0.05 -0.46 16 10 C -0.14 -1.87 8.29 71.98 0.60 -1.27 16 11 C -0.15 -2.35 7.13 71.98 0.51 -1.84 16 12 C -0.14 -2.02 8.29 71.98 0.60 -1.43 16 13 C -0.09 -2.02 8.70 22.25 0.19 -1.83 16 14 C -0.14 -4.10 9.62 22.40 0.22 -3.88 16 15 C 0.49 23.19 7.44 87.94 0.65 23.85 16 16 O -0.51 -26.98 14.10 -3.06 -0.04 -27.02 16 17 C -0.13 -5.59 2.98 -11.74 -0.03 -5.62 16 18 H 0.14 5.39 8.14 -2.38 -0.02 5.37 16 19 C 0.07 3.44 4.49 29.85 0.13 3.57 16 20 C -0.54 -30.82 8.39 25.60 0.21 -30.60 16 21 H 0.05 3.14 7.24 -2.91 -0.02 3.12 16 22 C 0.01 0.64 5.46 84.66 0.46 1.10 16 23 N -0.92 -55.22 13.29 21.45 0.28 -54.94 16 24 Si 0.95 45.95 29.54 68.60 2.03 47.98 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 28 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 2.05 7.49 -2.39 -0.02 2.03 16 31 H 0.12 5.29 5.35 -2.91 -0.02 5.28 16 32 H 0.14 3.62 5.88 -2.91 -0.02 3.60 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.80 7.38 -2.39 -0.02 0.78 16 36 H 0.05 0.92 7.51 -2.39 -0.02 0.90 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.93 7.51 -2.39 -0.02 0.92 16 39 H 0.06 0.86 7.38 -2.39 -0.02 0.84 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.16 2.63 7.09 -2.91 -0.02 2.61 16 43 H 0.14 3.92 7.61 -2.91 -0.02 3.90 16 44 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 45 H 0.05 2.28 7.50 -2.39 -0.02 2.27 16 46 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -73.92 371.52 6.80 -67.12 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.97 Total: 15.87 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 5.14 Total: -20.16 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.30 Total: -83.78 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.04 Total: -27.02 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.92 6.80 -67.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601934054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.198 kcal (2) G-P(sol) polarization free energy of solvation -73.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds