Wall clock time and date at job start Tue Mar 31 2020 11:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34220 * 126.07403 * 2 1 4 4 C 1.31277 * 108.63493 * 179.97438 * 3 2 1 5 5 C 1.47708 * 125.73837 * 180.02562 * 4 3 2 6 6 C 1.39674 * 120.06717 * 359.72712 * 5 4 3 7 7 C 1.37752 * 119.92947 * 179.76791 * 6 5 4 8 8 C 1.39095 * 120.06924 * 0.50593 * 7 6 5 9 9 N 1.39431 * 119.93068 * 179.76617 * 8 7 6 10 10 C 1.46502 * 119.99854 * 359.97438 * 9 8 7 11 11 C 1.52996 * 109.46772 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47252 * 55.00083 * 11 10 9 13 13 C 1.53004 * 109.47353 * 295.00296 * 11 10 9 14 14 C 1.53002 * 109.46823 * 175.00265 * 11 10 9 15 15 C 1.50702 * 109.46744 * 185.00406 * 14 11 10 16 16 H 1.07995 * 120.00150 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99714 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47360 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47222 * 120.00190 * 19 17 15 22 22 H 1.48505 * 109.47239 * 240.00108 * 19 17 15 23 23 C 1.39091 * 120.13588 * 359.74558 * 8 7 6 24 24 C 1.37745 * 120.07270 * 359.97438 * 23 8 7 25 25 O 1.34453 * 108.53146 * 359.73897 * 4 3 2 26 26 C 1.34479 * 126.07317 * 179.97438 * 2 1 3 27 27 C 1.50706 * 126.35417 * 0.02899 * 26 2 1 28 28 H 1.09004 * 109.47411 * 270.04361 * 1 2 3 29 29 H 1.09005 * 109.46961 * 30.03964 * 1 2 3 30 30 H 1.08995 * 109.47767 * 150.03866 * 1 2 3 31 31 H 1.07996 * 120.03526 * 359.97438 * 6 5 4 32 32 H 1.07991 * 119.96766 * 180.27485 * 7 6 5 33 33 H 0.97002 * 119.99872 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.46987 * 299.99897 * 10 9 8 35 35 H 1.08997 * 109.46833 * 60.00027 * 10 9 8 36 36 H 1.09004 * 109.46708 * 299.99538 * 13 11 10 37 37 H 1.08991 * 109.47053 * 59.99869 * 13 11 10 38 38 H 1.09000 * 109.47244 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46925 * 304.99708 * 14 11 10 40 40 H 1.08991 * 109.47292 * 65.00051 * 14 11 10 41 41 H 0.97009 * 120.00301 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.95968 * 180.02562 * 23 8 7 43 43 H 1.08003 * 120.03894 * 180.02562 * 24 23 8 44 44 H 1.09001 * 109.46953 * 90.00251 * 27 26 2 45 45 H 1.09000 * 109.47318 * 209.99848 * 27 26 2 46 46 H 1.09000 * 109.47161 * 330.00479 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2973 1.0848 0.0000 4 6 3.5497 0.6914 0.0006 5 6 4.7321 1.5767 0.0013 6 6 4.5679 2.9637 -0.0043 7 6 5.6725 3.7867 0.0012 8 6 6.9506 3.2377 0.0017 9 7 8.0667 4.0735 0.0024 10 6 7.8925 5.5281 0.0020 11 6 9.2642 6.2058 0.0035 12 1 9.8521 5.8382 -0.8375 13 6 9.9900 5.8853 1.3118 14 6 9.0849 7.7201 -0.1226 15 6 10.4356 8.3773 -0.2447 16 1 11.3321 7.7753 -0.2330 17 6 10.5267 9.7472 -0.3712 18 7 9.4350 10.4804 -0.3849 19 14 12.2008 10.5620 -0.5218 20 1 13.2622 9.5243 -0.4779 21 1 12.2795 11.2971 -1.8097 22 1 12.3918 11.5125 0.6031 23 6 7.1174 1.8569 0.0020 24 6 6.0168 1.0286 0.0023 25 8 3.5754 -0.6529 0.0067 26 6 2.2988 -1.0870 0.0005 27 6 1.8438 -2.5237 0.0005 28 1 -0.3634 0.0008 1.0277 29 1 -0.3633 0.8897 -0.5145 30 1 -0.3634 -0.8902 -0.5132 31 1 3.5758 3.3905 -0.0096 32 1 5.5462 4.8592 0.0014 33 1 8.9584 3.6917 0.0032 34 1 7.3399 5.8276 -0.8884 35 1 7.3385 5.8279 0.8915 36 1 9.4022 6.2531 2.1529 37 1 10.1176 4.8067 1.4016 38 1 10.9670 6.3686 1.3131 39 1 8.4910 7.9430 -1.0089 40 1 8.5744 8.1004 0.7621 41 1 9.4990 11.4442 -0.4743 42 1 8.1111 1.4337 0.0029 43 1 6.1471 -0.0435 0.0030 44 1 1.7346 -2.8702 -1.0272 45 1 2.5824 -3.1387 0.5147 46 1 0.8854 -2.6013 0.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602491986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:19 Heat of formation + Delta-G solvation = 20.670973 kcal Electronic energy + Delta-G solvation = -24311.804498 eV Core-core repulsion = 20780.811279 eV Total energy + Delta-G solvation = -3530.993219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.34149 -39.46640 -36.83218 -35.30892 -34.38422 -33.10568 -32.08748 -31.03268 -29.73895 -29.20504 -27.02547 -26.27808 -25.16280 -23.30030 -23.07138 -21.92295 -21.27474 -20.36565 -19.32979 -17.59132 -16.90767 -16.82343 -16.56401 -15.86365 -15.31485 -14.68473 -14.56471 -14.34035 -14.17638 -13.68308 -13.65222 -13.60335 -13.42512 -13.35853 -13.22446 -12.75725 -12.68103 -12.48080 -12.33757 -12.09647 -11.98610 -11.61010 -11.18395 -11.03806 -10.96374 -10.92385 -10.53443 -10.44636 -10.42106 -10.22564 -9.84848 -9.37433 -9.09298 -9.01808 -8.69290 -8.41680 -7.19847 -6.05914 -4.08018 0.77351 1.43894 1.77223 2.50192 2.71429 3.27085 3.35138 3.37971 3.56197 3.85906 3.90452 4.41206 4.50790 4.61183 4.80432 4.89454 4.95975 5.04544 5.17709 5.30061 5.31463 5.32787 5.35088 5.41689 5.48968 5.55706 5.58511 5.65515 5.77339 5.83614 5.91414 6.02902 6.09695 6.12053 6.27429 6.27859 6.35362 6.43700 6.48969 6.70076 6.81163 6.93206 6.97980 7.39262 7.56985 7.67440 7.69771 7.80370 7.92345 8.34323 8.97803 9.56111 11.05407 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.037816 B = 0.001875 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.244134 B =14933.168195 C =15529.032920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.008 4.008 3 N -0.485 5.485 4 C 0.263 3.737 5 C -0.106 4.106 6 C -0.013 4.013 7 C -0.205 4.205 8 C 0.250 3.750 9 N -0.729 5.729 10 C 0.120 3.880 11 C -0.096 4.096 12 H 0.063 0.937 13 C -0.133 4.133 14 C 0.030 3.970 15 C -0.517 4.517 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.208 4.208 24 C -0.035 4.035 25 O -0.200 6.200 26 C -0.069 4.069 27 C -0.063 4.063 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.401 0.599 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.771 -24.550 1.330 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.129 4.129 3 N -0.214 5.214 4 C 0.060 3.940 5 C -0.110 4.110 6 C -0.033 4.033 7 C -0.227 4.227 8 C 0.141 3.859 9 N -0.354 5.354 10 C -0.003 4.003 11 C -0.115 4.115 12 H 0.081 0.919 13 C -0.190 4.190 14 C -0.008 4.008 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.231 4.231 24 C -0.055 4.055 25 O -0.088 6.088 26 C -0.122 4.122 27 C -0.120 4.120 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.236 0.764 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.017 -23.522 1.324 27.414 hybrid contribution 1.476 -0.237 -0.095 1.498 sum -12.542 -23.760 1.229 26.895 Atomic orbital electron populations 1.20102 0.86654 1.03235 1.02734 1.21494 0.97849 0.87835 1.05750 1.70593 0.99941 1.30745 1.20161 1.23803 0.93250 0.78015 0.98941 1.16930 0.87296 0.90744 1.15987 1.20845 0.99135 0.90721 0.92611 1.20652 0.90336 1.00454 1.11301 1.18146 0.88051 0.90008 0.89723 1.45160 1.05854 1.05934 1.78452 1.21758 0.99815 0.77702 1.01041 1.21456 0.92631 0.99769 0.97683 0.91885 1.21733 1.01705 0.98249 0.97331 1.19088 0.97463 0.86823 0.97418 1.21216 0.92627 0.91734 1.49963 0.92490 1.25019 0.96460 0.97617 0.95390 1.69966 1.27273 1.05609 1.50461 0.86554 0.84400 0.79493 0.77656 1.19785 1.21033 1.21033 1.20440 0.98961 0.91279 1.12417 1.20820 0.90631 0.99438 0.94599 1.84436 1.29892 1.23803 1.70712 1.23129 0.80756 0.98144 1.10176 1.20207 1.01708 0.86596 1.03472 0.90819 0.90547 0.90892 0.84833 0.84911 0.76427 0.92054 0.92130 0.93390 0.95104 0.91671 0.96377 0.96238 0.93004 0.85630 0.85754 0.90091 0.90501 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.04 36.01 0.36 -0.17 16 2 C -0.01 -0.10 7.10 -82.88 -0.59 -0.69 16 3 N -0.49 -6.93 10.91 -7.99 -0.09 -7.02 16 4 C 0.26 3.67 7.89 -13.92 -0.11 3.56 16 5 C -0.11 -1.41 5.87 -104.96 -0.62 -2.02 16 6 C -0.01 -0.17 9.68 -39.22 -0.38 -0.55 16 7 C -0.20 -2.72 9.29 -39.44 -0.37 -3.09 16 8 C 0.25 3.27 6.65 -83.77 -0.56 2.72 16 9 N -0.73 -9.70 5.45 -58.60 -0.32 -10.02 16 10 C 0.12 1.87 4.29 -4.04 -0.02 1.86 16 11 C -0.10 -1.78 2.37 -90.62 -0.22 -1.99 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.13 -2.28 8.88 37.16 0.33 -1.95 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.52 -13.86 8.41 -34.44 -0.29 -14.15 16 16 H 0.06 1.49 7.06 -52.49 -0.37 1.11 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.21 -2.43 9.87 -39.45 -0.39 -2.82 16 24 C -0.03 -0.41 9.70 -39.23 -0.38 -0.79 16 25 O -0.20 -2.59 10.52 3.82 0.04 -2.55 16 26 C -0.07 -0.74 7.38 -35.63 -0.26 -1.00 16 27 C -0.06 -0.37 10.04 36.01 0.36 -0.01 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.38 7.77 -51.93 -0.40 -0.03 16 31 H 0.13 1.69 7.83 -52.49 -0.41 1.28 16 32 H 0.13 1.73 6.70 -52.49 -0.35 1.37 16 33 H 0.40 4.81 7.66 -40.82 -0.31 4.50 16 34 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 35 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.44 7.18 -51.93 -0.37 0.06 16 38 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.12 1.26 7.89 -52.48 -0.41 0.84 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.34 7.78 -51.93 -0.40 -0.06 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -31.16 382.59 -9.39 -40.56 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.17 Total: 1.60 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -3.34 Total: -19.04 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.33 Total: -42.44 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.16 -9.39 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.227 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds