Wall clock time and date at job start Tue Mar 31 2020 11:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34220 * 126.07403 * 2 1 4 4 C 1.31277 * 108.63493 * 179.97438 * 3 2 1 5 5 C 1.47708 * 125.73837 * 180.02562 * 4 3 2 6 6 C 1.39674 * 120.06717 * 359.72712 * 5 4 3 7 7 C 1.37752 * 119.92947 * 179.76791 * 6 5 4 8 8 C 1.39095 * 120.06924 * 0.50593 * 7 6 5 9 9 N 1.39431 * 119.93068 * 179.76617 * 8 7 6 10 10 C 1.46502 * 119.99854 * 359.97438 * 9 8 7 11 11 C 1.52996 * 109.46772 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47252 * 55.00083 * 11 10 9 13 13 C 1.53004 * 109.47353 * 295.00296 * 11 10 9 14 14 C 1.53002 * 109.46823 * 175.00265 * 11 10 9 15 15 C 1.50702 * 109.46744 * 185.00406 * 14 11 10 16 16 H 1.07995 * 120.00150 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99714 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47360 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47222 * 120.00190 * 19 17 15 22 22 H 1.48505 * 109.47239 * 240.00108 * 19 17 15 23 23 C 1.39091 * 120.13588 * 359.74558 * 8 7 6 24 24 C 1.37745 * 120.07270 * 359.97438 * 23 8 7 25 25 O 1.34453 * 108.53146 * 359.73897 * 4 3 2 26 26 C 1.34479 * 126.07317 * 179.97438 * 2 1 3 27 27 C 1.50706 * 126.35417 * 0.02899 * 26 2 1 28 28 H 1.09004 * 109.47411 * 270.04361 * 1 2 3 29 29 H 1.09005 * 109.46961 * 30.03964 * 1 2 3 30 30 H 1.08995 * 109.47767 * 150.03866 * 1 2 3 31 31 H 1.07996 * 120.03526 * 359.97438 * 6 5 4 32 32 H 1.07991 * 119.96766 * 180.27485 * 7 6 5 33 33 H 0.97002 * 119.99872 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.46987 * 299.99897 * 10 9 8 35 35 H 1.08997 * 109.46833 * 60.00027 * 10 9 8 36 36 H 1.09004 * 109.46708 * 299.99538 * 13 11 10 37 37 H 1.08991 * 109.47053 * 59.99869 * 13 11 10 38 38 H 1.09000 * 109.47244 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46925 * 304.99708 * 14 11 10 40 40 H 1.08991 * 109.47292 * 65.00051 * 14 11 10 41 41 H 0.97009 * 120.00301 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.95968 * 180.02562 * 23 8 7 43 43 H 1.08003 * 120.03894 * 180.02562 * 24 23 8 44 44 H 1.09001 * 109.46953 * 90.00251 * 27 26 2 45 45 H 1.09000 * 109.47318 * 209.99848 * 27 26 2 46 46 H 1.09000 * 109.47161 * 330.00479 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2973 1.0848 0.0000 4 6 3.5497 0.6914 0.0006 5 6 4.7321 1.5767 0.0013 6 6 4.5679 2.9637 -0.0043 7 6 5.6725 3.7867 0.0012 8 6 6.9506 3.2377 0.0017 9 7 8.0667 4.0735 0.0024 10 6 7.8925 5.5281 0.0020 11 6 9.2642 6.2058 0.0035 12 1 9.8521 5.8382 -0.8375 13 6 9.9900 5.8853 1.3118 14 6 9.0849 7.7201 -0.1226 15 6 10.4356 8.3773 -0.2447 16 1 11.3321 7.7753 -0.2330 17 6 10.5267 9.7472 -0.3712 18 7 9.4350 10.4804 -0.3849 19 14 12.2008 10.5620 -0.5218 20 1 13.2622 9.5243 -0.4779 21 1 12.2795 11.2971 -1.8097 22 1 12.3918 11.5125 0.6031 23 6 7.1174 1.8569 0.0020 24 6 6.0168 1.0286 0.0023 25 8 3.5754 -0.6529 0.0067 26 6 2.2988 -1.0870 0.0005 27 6 1.8438 -2.5237 0.0005 28 1 -0.3634 0.0008 1.0277 29 1 -0.3633 0.8897 -0.5145 30 1 -0.3634 -0.8902 -0.5132 31 1 3.5758 3.3905 -0.0096 32 1 5.5462 4.8592 0.0014 33 1 8.9584 3.6917 0.0032 34 1 7.3399 5.8276 -0.8884 35 1 7.3385 5.8279 0.8915 36 1 9.4022 6.2531 2.1529 37 1 10.1176 4.8067 1.4016 38 1 10.9670 6.3686 1.3131 39 1 8.4910 7.9430 -1.0089 40 1 8.5744 8.1004 0.7621 41 1 9.4990 11.4442 -0.4743 42 1 8.1111 1.4337 0.0029 43 1 6.1471 -0.0435 0.0030 44 1 1.7346 -2.8702 -1.0272 45 1 2.5824 -3.1387 0.5147 46 1 0.8854 -2.6013 0.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602491986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:18 Heat of formation + Delta-G solvation = 2.270985 kcal Electronic energy + Delta-G solvation = -24312.602382 eV Core-core repulsion = 20780.811279 eV Total energy + Delta-G solvation = -3531.791102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.23960 -40.49012 -38.16578 -36.19304 -35.79520 -34.33215 -33.56911 -32.00831 -30.73282 -29.94006 -28.80283 -27.48290 -26.15044 -24.90628 -24.05243 -23.07430 -22.22390 -21.34050 -20.78195 -18.58711 -18.54504 -17.85194 -17.81270 -16.90895 -16.54828 -16.31916 -16.00410 -15.21490 -15.16607 -14.74398 -14.62848 -14.42318 -14.27397 -14.24109 -14.19852 -14.08266 -13.86556 -13.43498 -13.37678 -13.16075 -13.10152 -12.91754 -12.80160 -12.67978 -12.27669 -12.15232 -12.04949 -11.90407 -11.68241 -11.45703 -11.18295 -11.10569 -11.02222 -10.54503 -9.99189 -9.57335 -8.21185 -8.18072 -6.26910 -0.18548 0.46406 0.88075 1.40178 1.41396 1.53243 1.65386 1.76395 2.38555 2.48743 2.91166 3.01661 3.16273 3.78077 3.87739 3.92978 4.01753 4.05614 4.17877 4.29029 4.37538 4.38817 4.45839 4.60321 4.64438 4.67140 4.76673 4.77610 4.83077 4.84574 4.93258 4.95212 5.03838 5.08558 5.15063 5.20859 5.29408 5.33021 5.37678 5.46576 5.47831 5.52679 5.54994 5.73417 5.78333 5.86892 6.23255 6.32753 6.76131 6.81256 6.89721 7.41606 8.93960 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.037816 B = 0.001875 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.244134 B =14933.168195 C =15529.032920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.037 4.037 3 N -0.511 5.511 4 C 0.237 3.763 5 C -0.112 4.112 6 C -0.022 4.022 7 C -0.214 4.214 8 C 0.239 3.761 9 N -0.725 5.725 10 C 0.136 3.864 11 C -0.085 4.085 12 H 0.065 0.935 13 C -0.126 4.126 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.064 0.936 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.960 3.040 20 H -0.261 1.261 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.197 4.197 24 C -0.034 4.034 25 O -0.209 6.209 26 C -0.065 4.065 27 C -0.063 4.063 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.410 0.590 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.047 0.953 39 H -0.009 1.009 40 H -0.006 1.006 41 H 0.261 0.739 42 H 0.153 0.847 43 H 0.144 0.856 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.190 -27.434 1.455 30.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.157 4.157 3 N -0.241 5.241 4 C 0.035 3.965 5 C -0.116 4.116 6 C -0.042 4.042 7 C -0.237 4.237 8 C 0.131 3.869 9 N -0.351 5.351 10 C 0.011 3.989 11 C -0.104 4.104 12 H 0.084 0.916 13 C -0.184 4.184 14 C -0.005 4.005 15 C -0.566 4.566 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.785 3.215 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.220 4.220 24 C -0.054 4.054 25 O -0.097 6.097 26 C -0.117 4.117 27 C -0.119 4.119 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.247 0.753 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.010 0.990 40 H 0.013 0.987 41 H 0.070 0.930 42 H 0.170 0.830 43 H 0.161 0.839 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.433 -26.446 1.450 29.698 hybrid contribution 1.156 0.551 -0.139 1.288 sum -12.277 -25.895 1.311 28.688 Atomic orbital electron populations 1.20227 0.84178 1.04284 1.03714 1.22174 0.99580 0.87482 1.06472 1.70562 1.00659 1.32462 1.20456 1.23904 0.93414 0.78633 1.00589 1.17126 0.88059 0.90708 1.15733 1.20827 0.98979 0.91062 0.93337 1.20687 0.90854 1.00348 1.11777 1.18238 0.87592 0.90666 0.90431 1.44850 1.06441 1.04603 1.79232 1.21360 0.97735 0.79190 1.00578 1.21210 0.94506 0.95976 0.98715 0.91612 1.21652 1.00228 1.00437 0.96035 1.18977 0.95761 0.90867 0.94929 1.21659 0.93857 0.92179 1.48925 0.91803 1.25934 1.00249 0.98564 0.95263 1.70101 1.29623 1.05881 1.51862 0.85472 0.79976 0.78522 0.77515 1.18449 1.20787 1.20750 1.20688 1.00147 0.90400 1.10730 1.21036 0.89944 1.00474 0.93955 1.84428 1.31229 1.23316 1.70734 1.24104 0.79770 1.00082 1.07781 1.20490 1.02932 0.83437 1.05037 0.89787 0.91349 0.88003 0.85290 0.85381 0.75346 0.92917 0.92508 0.94025 0.91490 0.93347 0.99031 0.98733 0.92981 0.82976 0.83865 0.88359 0.89613 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.04 71.24 0.72 -0.20 16 2 C -0.04 -0.82 7.10 41.33 0.29 -0.53 16 3 N -0.51 -14.82 10.91 -293.21 -3.20 -18.02 16 4 C 0.24 6.66 7.89 87.28 0.69 7.35 16 5 C -0.11 -2.99 5.87 -20.08 -0.12 -3.11 16 6 C -0.02 -0.60 9.68 22.50 0.22 -0.38 16 7 C -0.21 -5.78 9.29 22.36 0.21 -5.57 16 8 C 0.24 6.00 6.65 38.34 0.26 6.25 16 9 N -0.72 -18.24 5.45 -339.32 -1.85 -20.09 16 10 C 0.14 4.23 4.29 86.38 0.37 4.60 16 11 C -0.09 -3.13 2.37 -10.79 -0.03 -3.15 16 12 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 13 C -0.13 -4.19 8.88 71.98 0.64 -3.55 16 14 C 0.03 1.60 4.45 29.85 0.13 1.74 16 15 C -0.53 -28.62 8.41 25.60 0.22 -28.41 16 16 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 17 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 18 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 19 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 C -0.20 -4.18 9.87 22.36 0.22 -3.96 16 24 C -0.03 -0.75 9.70 22.50 0.22 -0.53 16 25 O -0.21 -5.24 10.52 -9.23 -0.10 -5.33 16 26 C -0.06 -1.29 7.38 24.83 0.18 -1.11 16 27 C -0.06 -0.54 10.04 71.24 0.71 0.18 16 28 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.10 0.76 7.77 -2.39 -0.02 0.74 16 31 H 0.13 3.50 7.83 -2.91 -0.02 3.48 16 32 H 0.13 3.49 6.70 -2.92 -0.02 3.47 16 33 H 0.41 8.80 7.66 -92.71 -0.71 8.09 16 34 H 0.05 1.73 7.94 -2.39 -0.02 1.71 16 35 H 0.06 1.81 7.94 -2.39 -0.02 1.80 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.73 7.18 -2.39 -0.02 1.71 16 38 H 0.05 1.76 6.95 -2.39 -0.02 1.74 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 42 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.14 2.59 7.89 -2.91 -0.02 2.57 16 44 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.11 0.44 7.78 -2.39 -0.02 0.42 16 Total: -1.00 -69.29 382.59 2.82 -66.47 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.27 Total: 17.22 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 5.39 Total: -30.08 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -4.76 Total: -93.84 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.10 Total: -5.33 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -69.29 2.82 -66.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.740 kcal (2) G-P(sol) polarization free energy of solvation -69.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds