Wall clock time and date at job start Tue Mar 31 2020 10:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34547 * 126.08298 * 2 1 4 4 O 1.34775 * 107.27027 * 180.26512 * 3 2 1 5 5 C 1.34428 * 107.69223 * 359.57168 * 4 3 2 6 6 C 1.47842 * 125.72297 * 180.12829 * 5 4 3 7 7 C 1.39614 * 120.10622 * 180.08329 * 6 5 4 8 8 C 1.37995 * 120.00375 * 179.71866 * 7 6 5 9 9 C 1.38241 * 120.22222 * 0.55605 * 8 7 6 10 10 C 1.50703 * 119.89210 * 179.69736 * 9 8 7 11 11 C 1.38995 * 120.21870 * 359.71861 * 9 8 7 12 12 N 1.39694 * 120.00468 * 179.97438 * 11 9 8 13 13 C 1.46498 * 120.00195 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47371 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.46996 * 305.00732 * 14 13 12 16 16 C 1.52998 * 109.46814 * 65.00068 * 14 13 12 17 17 C 1.52998 * 109.47293 * 185.00306 * 14 13 12 18 18 C 1.50699 * 109.46965 * 175.00202 * 17 14 13 19 19 H 1.08000 * 119.99920 * 359.97438 * 18 17 14 20 20 C 1.37879 * 119.99501 * 180.02562 * 18 17 14 21 21 N 1.31515 * 120.00293 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99618 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47093 * 60.00168 * 22 20 18 24 24 H 1.48497 * 109.47185 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47564 * 299.99834 * 22 20 18 26 26 C 1.38674 * 119.98876 * 0.02562 * 11 9 8 27 27 N 1.31215 * 108.55144 * 0.43585 * 5 4 3 28 28 H 1.09001 * 109.46948 * 89.99732 * 1 2 3 29 29 H 1.08996 * 109.47742 * 210.00141 * 1 2 3 30 30 H 1.08994 * 109.47292 * 330.00561 * 1 2 3 31 31 H 1.08002 * 126.36062 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00258 * 359.97438 * 7 6 5 33 33 H 1.07996 * 119.88488 * 180.25214 * 8 7 6 34 34 H 1.08995 * 109.47108 * 270.02588 * 10 9 8 35 35 H 1.09000 * 109.46979 * 30.02076 * 10 9 8 36 36 H 1.09000 * 109.47127 * 150.02187 * 10 9 8 37 37 H 0.97006 * 120.00045 * 0.02841 * 12 11 9 38 38 H 1.09001 * 109.47427 * 300.00849 * 13 12 11 39 39 H 1.09004 * 109.46661 * 60.00771 * 13 12 11 40 40 H 1.08998 * 109.47285 * 179.97438 * 16 14 13 41 41 H 1.08996 * 109.47576 * 300.00075 * 16 14 13 42 42 H 1.09007 * 109.47126 * 60.00510 * 16 14 13 43 43 H 1.09000 * 109.47137 * 295.00511 * 17 14 13 44 44 H 1.09001 * 109.46946 * 54.99946 * 17 14 13 45 45 H 0.96998 * 119.99957 * 179.97438 * 21 20 18 46 46 H 1.08004 * 120.10795 * 179.97438 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2994 1.0874 0.0000 4 8 3.5752 0.6528 -0.0060 5 6 3.5489 -0.6913 0.0001 6 6 4.7321 -1.5777 -0.0007 7 6 4.5683 -2.9642 0.0043 8 6 5.6741 -3.7897 -0.0023 9 6 6.9463 -3.2488 -0.0022 10 6 8.1487 -4.1572 -0.0025 11 6 7.1201 -1.8697 -0.0014 12 7 8.4077 -1.3279 -0.0008 13 6 8.5908 0.1256 0.0007 14 6 10.0857 0.4514 0.0004 15 1 10.5665 -0.0481 0.8415 16 6 10.7133 -0.0343 -1.3076 17 6 10.2781 1.9639 0.1277 18 6 11.7476 2.2747 0.2509 19 1 12.4717 1.4735 0.2400 20 6 12.1673 3.5818 0.3787 21 7 11.2854 4.5573 0.3924 22 14 13.9887 3.9670 0.5322 23 1 14.7016 3.4776 -0.6751 24 1 14.1755 5.4350 0.6556 25 1 14.5371 3.2948 1.7374 26 6 6.0151 -1.0318 -0.0001 27 7 2.2970 -1.0844 0.0000 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9736 2.1171 -0.0004 32 1 3.5761 -3.3908 0.0091 33 1 5.5452 -4.8619 -0.0025 34 1 8.4384 -4.3769 1.0251 35 1 7.9022 -5.0860 -0.5169 36 1 8.9752 -3.6658 -0.5159 37 1 9.1806 -1.9141 -0.0013 38 1 8.1263 0.5512 -0.8889 39 1 8.1264 0.5494 0.8911 40 1 11.7782 0.1981 -1.3081 41 1 10.5762 -1.1118 -1.3983 42 1 10.2325 0.4652 -2.1488 43 1 9.8753 2.4571 -0.7569 44 1 9.7551 2.3234 1.0139 45 1 11.5807 5.4769 0.4827 46 1 6.1479 0.0400 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602495126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:08 Heat of formation + Delta-G solvation = 23.859289 kcal Electronic energy + Delta-G solvation = -25015.820947 eV Core-core repulsion = 21484.965984 eV Total energy + Delta-G solvation = -3530.854963 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.34572 -39.68802 -36.76243 -35.28540 -34.34228 -33.25227 -32.03253 -31.26916 -29.28742 -28.04764 -26.93372 -26.46570 -25.85337 -23.27170 -22.85414 -21.86528 -20.88489 -20.67184 -19.23302 -17.78953 -16.73331 -16.65001 -16.44973 -15.85524 -15.25266 -14.80873 -14.69681 -14.55448 -14.20825 -13.85753 -13.71060 -13.55519 -13.53097 -13.09194 -12.83580 -12.61138 -12.44449 -12.33128 -12.27299 -12.00719 -11.59645 -11.41830 -11.14631 -11.12594 -10.95553 -10.90464 -10.64200 -10.45692 -10.39482 -10.14408 -9.78877 -9.35820 -9.33080 -9.09598 -8.39739 -8.27601 -7.22579 -6.04295 -4.06462 0.64072 1.59227 1.79385 2.62185 2.67109 3.29827 3.34916 3.36481 3.57209 3.86288 3.88497 4.42229 4.61848 4.71385 4.83432 4.93638 5.15819 5.27271 5.31400 5.32220 5.34348 5.40515 5.47576 5.55816 5.59028 5.65037 5.68041 5.71329 5.77009 5.84186 5.91640 6.00879 6.10661 6.16167 6.29620 6.34585 6.38789 6.49333 6.52175 6.75304 6.85485 6.95881 7.00447 7.46837 7.58722 7.62990 7.72187 7.90572 7.93956 8.36083 8.98960 9.57358 11.07057 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002819 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.952546 B = 9929.674949 C =11870.436790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.017 4.017 3 C -0.078 4.078 4 O -0.192 6.192 5 C 0.245 3.755 6 C 0.017 3.983 7 C -0.133 4.133 8 C -0.077 4.077 9 C -0.149 4.149 10 C -0.108 4.108 11 C 0.225 3.775 12 N -0.737 5.737 13 C 0.123 3.877 14 C -0.095 4.095 15 H 0.062 0.938 16 C -0.132 4.132 17 C 0.030 3.970 18 C -0.517 4.517 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.166 4.166 27 N -0.474 5.474 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.215 0.785 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.400 0.600 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.047 0.953 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.261 0.739 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.963 -13.987 -1.321 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 C -0.148 4.148 4 O -0.077 6.077 5 C 0.042 3.958 6 C 0.015 3.985 7 C -0.155 4.155 8 C -0.095 4.095 9 C -0.154 4.154 10 C -0.164 4.164 11 C 0.119 3.881 12 N -0.366 5.366 13 C -0.001 4.001 14 C -0.114 4.114 15 H 0.081 0.919 16 C -0.189 4.189 17 C -0.007 4.007 18 C -0.556 4.556 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.190 4.190 27 N -0.204 5.204 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.232 0.768 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.237 0.763 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.103 -14.139 -1.313 22.229 hybrid contribution 1.370 1.143 0.086 1.787 sum -15.732 -12.996 -1.227 20.443 Atomic orbital electron populations 1.20091 0.86436 1.03337 1.02856 1.21823 0.98185 0.88283 1.05539 1.24890 0.80050 1.01092 1.08804 1.84557 1.30347 1.23532 1.69308 1.23938 0.93174 0.78613 1.00100 1.16950 0.86834 0.90716 1.03951 1.20763 0.99427 0.90771 1.04501 1.20635 0.90812 0.99338 0.98737 1.19553 0.95727 0.91968 1.08189 1.20637 0.95342 0.98351 1.02120 1.17474 0.85787 0.91181 0.93693 1.45087 1.03729 1.07329 1.80413 1.21683 0.98873 0.78792 1.00705 1.21436 0.91101 1.01273 0.97610 0.91935 1.21726 1.02121 0.97731 0.97368 1.19075 0.97101 0.87181 0.97361 1.21142 0.92232 0.92074 1.50103 0.92601 1.25013 0.97490 0.96530 0.95396 1.69948 1.33493 0.99593 1.50367 0.86674 0.85621 0.77172 0.78628 1.20268 1.21306 1.20269 1.20673 0.90027 1.00056 1.08249 1.70535 0.99902 1.30964 1.18997 0.90742 0.90612 0.90709 0.76809 0.85189 0.85532 0.91361 0.91422 0.91964 0.76349 0.92518 0.92425 0.91707 0.95147 0.93432 0.96300 0.96440 0.92912 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.43 36.01 0.38 -0.15 16 2 C -0.02 -0.20 7.10 -82.88 -0.59 -0.79 16 3 C -0.08 -0.86 12.08 29.43 0.36 -0.50 16 4 O -0.19 -2.74 10.52 4.06 0.04 -2.70 16 5 C 0.25 3.61 7.90 -13.89 -0.11 3.50 16 6 C 0.02 0.25 5.87 -105.01 -0.62 -0.37 16 7 C -0.13 -1.66 9.68 -39.16 -0.38 -2.04 16 8 C -0.08 -0.85 9.67 -39.67 -0.38 -1.23 16 9 C -0.15 -1.77 5.90 -104.34 -0.62 -2.38 16 10 C -0.11 -1.01 9.56 36.01 0.34 -0.66 16 11 C 0.22 3.11 6.63 -83.83 -0.56 2.56 16 12 N -0.74 -10.39 5.36 -58.67 -0.31 -10.70 16 13 C 0.12 2.03 4.30 -4.04 -0.02 2.01 16 14 C -0.10 -1.81 2.37 -90.62 -0.22 -2.02 16 15 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.13 -2.32 8.88 37.16 0.33 -1.99 16 17 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 18 C -0.52 -14.00 8.41 -34.44 -0.29 -14.29 16 19 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.17 -2.42 8.97 -38.98 -0.35 -2.77 16 27 N -0.47 -6.75 10.91 -7.96 -0.09 -6.84 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.22 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.13 1.52 7.83 -52.48 -0.41 1.11 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 37 H 0.40 5.12 5.63 -40.82 -0.23 4.89 16 38 H 0.06 0.96 7.95 -51.93 -0.41 0.54 16 39 H 0.06 0.99 7.95 -51.93 -0.41 0.57 16 40 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 41 H 0.03 0.44 7.18 -51.93 -0.37 0.07 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.13 2.00 6.57 -52.48 -0.34 1.65 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -31.24 379.86 -8.89 -40.13 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.04 Total: 2.81 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.94 Total: -19.01 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.34 Total: -43.20 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.24 -8.89 -40.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.990 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds