Wall clock time and date at job start Tue Mar 31 2020 10:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34547 * 126.08298 * 2 1 4 4 O 1.34775 * 107.27027 * 180.26512 * 3 2 1 5 5 C 1.34428 * 107.69223 * 359.57168 * 4 3 2 6 6 C 1.47842 * 125.72297 * 180.12829 * 5 4 3 7 7 C 1.39614 * 120.10622 * 180.08329 * 6 5 4 8 8 C 1.37995 * 120.00375 * 179.71866 * 7 6 5 9 9 C 1.38241 * 120.22222 * 0.55605 * 8 7 6 10 10 C 1.50703 * 119.89210 * 179.69736 * 9 8 7 11 11 C 1.38995 * 120.21870 * 359.71861 * 9 8 7 12 12 N 1.39694 * 120.00468 * 179.97438 * 11 9 8 13 13 C 1.46498 * 120.00195 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47371 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.46996 * 305.00732 * 14 13 12 16 16 C 1.52998 * 109.46814 * 65.00068 * 14 13 12 17 17 C 1.52998 * 109.47293 * 185.00306 * 14 13 12 18 18 C 1.50699 * 109.46965 * 175.00202 * 17 14 13 19 19 H 1.08000 * 119.99920 * 359.97438 * 18 17 14 20 20 C 1.37879 * 119.99501 * 180.02562 * 18 17 14 21 21 N 1.31515 * 120.00293 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99618 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47093 * 60.00168 * 22 20 18 24 24 H 1.48497 * 109.47185 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47564 * 299.99834 * 22 20 18 26 26 C 1.38674 * 119.98876 * 0.02562 * 11 9 8 27 27 N 1.31215 * 108.55144 * 0.43585 * 5 4 3 28 28 H 1.09001 * 109.46948 * 89.99732 * 1 2 3 29 29 H 1.08996 * 109.47742 * 210.00141 * 1 2 3 30 30 H 1.08994 * 109.47292 * 330.00561 * 1 2 3 31 31 H 1.08002 * 126.36062 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00258 * 359.97438 * 7 6 5 33 33 H 1.07996 * 119.88488 * 180.25214 * 8 7 6 34 34 H 1.08995 * 109.47108 * 270.02588 * 10 9 8 35 35 H 1.09000 * 109.46979 * 30.02076 * 10 9 8 36 36 H 1.09000 * 109.47127 * 150.02187 * 10 9 8 37 37 H 0.97006 * 120.00045 * 0.02841 * 12 11 9 38 38 H 1.09001 * 109.47427 * 300.00849 * 13 12 11 39 39 H 1.09004 * 109.46661 * 60.00771 * 13 12 11 40 40 H 1.08998 * 109.47285 * 179.97438 * 16 14 13 41 41 H 1.08996 * 109.47576 * 300.00075 * 16 14 13 42 42 H 1.09007 * 109.47126 * 60.00510 * 16 14 13 43 43 H 1.09000 * 109.47137 * 295.00511 * 17 14 13 44 44 H 1.09001 * 109.46946 * 54.99946 * 17 14 13 45 45 H 0.96998 * 119.99957 * 179.97438 * 21 20 18 46 46 H 1.08004 * 120.10795 * 179.97438 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2994 1.0874 0.0000 4 8 3.5752 0.6528 -0.0060 5 6 3.5489 -0.6913 0.0001 6 6 4.7321 -1.5777 -0.0007 7 6 4.5683 -2.9642 0.0043 8 6 5.6741 -3.7897 -0.0023 9 6 6.9463 -3.2488 -0.0022 10 6 8.1487 -4.1572 -0.0025 11 6 7.1201 -1.8697 -0.0014 12 7 8.4077 -1.3279 -0.0008 13 6 8.5908 0.1256 0.0007 14 6 10.0857 0.4514 0.0004 15 1 10.5665 -0.0481 0.8415 16 6 10.7133 -0.0343 -1.3076 17 6 10.2781 1.9639 0.1277 18 6 11.7476 2.2747 0.2509 19 1 12.4717 1.4735 0.2400 20 6 12.1673 3.5818 0.3787 21 7 11.2854 4.5573 0.3924 22 14 13.9887 3.9670 0.5322 23 1 14.7016 3.4776 -0.6751 24 1 14.1755 5.4350 0.6556 25 1 14.5371 3.2948 1.7374 26 6 6.0151 -1.0318 -0.0001 27 7 2.2970 -1.0844 0.0000 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9736 2.1171 -0.0004 32 1 3.5761 -3.3908 0.0091 33 1 5.5452 -4.8619 -0.0025 34 1 8.4384 -4.3769 1.0251 35 1 7.9022 -5.0860 -0.5169 36 1 8.9752 -3.6658 -0.5159 37 1 9.1806 -1.9141 -0.0013 38 1 8.1263 0.5512 -0.8889 39 1 8.1264 0.5494 0.8911 40 1 11.7782 0.1981 -1.3081 41 1 10.5762 -1.1118 -1.3983 42 1 10.2325 0.4652 -2.1488 43 1 9.8753 2.4571 -0.7569 44 1 9.7551 2.3234 1.0139 45 1 11.5807 5.4769 0.4827 46 1 6.1479 0.0400 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602495126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:07 Heat of formation + Delta-G solvation = 5.224712 kcal Electronic energy + Delta-G solvation = -25016.629003 eV Core-core repulsion = 21484.965984 eV Total energy + Delta-G solvation = -3531.663019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.32123 -40.71563 -38.16535 -36.26426 -35.73899 -34.52377 -33.69493 -32.11171 -30.47077 -29.02061 -28.58038 -27.43213 -27.14014 -24.99781 -23.83749 -23.00960 -21.92681 -21.72250 -20.71169 -18.83417 -18.56054 -17.74390 -17.51975 -17.04190 -16.56438 -16.24720 -16.06135 -15.69806 -15.30795 -14.93703 -14.85679 -14.50139 -14.28458 -14.22001 -14.17300 -13.88115 -13.79822 -13.40452 -13.18452 -13.13336 -12.99873 -12.78720 -12.71026 -12.35554 -12.27081 -12.13445 -12.09623 -11.99612 -11.70582 -11.64392 -11.19046 -11.07254 -11.05162 -10.54588 -10.26064 -9.24239 -8.30293 -8.18759 -6.28234 -0.35740 0.60159 0.85239 1.40343 1.42609 1.50215 1.69038 1.71096 2.38345 2.48365 2.87899 2.91869 3.15227 3.78978 3.90545 3.94165 4.00815 4.08554 4.14763 4.26753 4.33256 4.41782 4.51776 4.58433 4.72854 4.76708 4.79526 4.80749 4.83805 4.86042 4.87927 4.91954 4.92749 4.98572 5.19188 5.25856 5.29363 5.30661 5.40405 5.44130 5.49788 5.52131 5.57505 5.74376 5.84656 5.85775 6.22581 6.33543 6.65162 6.85007 6.88453 7.40296 8.93212 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.002819 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.952546 B = 9929.674949 C =11870.436790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.033 4.033 3 C -0.078 4.078 4 O -0.214 6.214 5 C 0.218 3.782 6 C 0.001 3.999 7 C -0.132 4.132 8 C -0.069 4.069 9 C -0.143 4.143 10 C -0.108 4.108 11 C 0.209 3.791 12 N -0.733 5.733 13 C 0.141 3.859 14 C -0.083 4.083 15 H 0.066 0.934 16 C -0.125 4.125 17 C 0.034 3.966 18 C -0.529 4.529 19 H 0.065 0.935 20 C -0.002 4.002 21 N -0.936 5.936 22 Si 0.961 3.039 23 H -0.266 1.266 24 H -0.287 1.287 25 H -0.267 1.267 26 C -0.185 4.185 27 N -0.489 5.489 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.254 0.746 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.408 0.592 38 H 0.048 0.952 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.039 0.961 43 H -0.008 1.008 44 H -0.012 1.012 45 H 0.262 0.738 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 -16.230 -1.459 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.154 4.154 3 C -0.147 4.147 4 O -0.100 6.100 5 C 0.015 3.985 6 C -0.001 4.001 7 C -0.154 4.154 8 C -0.088 4.088 9 C -0.148 4.148 10 C -0.164 4.164 11 C 0.104 3.896 12 N -0.364 5.364 13 C 0.016 3.984 14 C -0.102 4.102 15 H 0.084 0.916 16 C -0.182 4.182 17 C -0.004 4.004 18 C -0.567 4.567 19 H 0.083 0.917 20 C -0.200 4.200 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.213 1.213 25 H -0.192 1.192 26 C -0.209 4.209 27 N -0.219 5.219 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.270 0.730 32 H 0.154 0.846 33 H 0.180 0.820 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.247 0.753 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.010 0.990 44 H 0.007 0.993 45 H 0.071 0.929 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.998 -16.418 -1.453 23.677 hybrid contribution 1.183 1.826 0.135 2.180 sum -15.815 -14.592 -1.318 21.559 Atomic orbital electron populations 1.20232 0.83572 1.04554 1.03958 1.22536 0.99979 0.87703 1.05206 1.25758 0.78877 1.02813 1.07259 1.84551 1.32153 1.23709 1.69580 1.24170 0.93685 0.78927 1.01710 1.17144 0.86588 0.91636 1.04688 1.20973 1.00426 0.90156 1.03807 1.21027 0.89811 1.00918 0.96996 1.19905 0.97248 0.91258 1.06394 1.20723 0.94017 0.98606 1.03085 1.17623 0.85075 0.92188 0.94672 1.44773 1.04371 1.05905 1.81309 1.21244 0.96786 0.80656 0.99732 1.21193 0.92971 0.97260 0.98790 0.91555 1.21640 1.00746 0.99932 0.95894 1.18960 0.95733 0.91004 0.94701 1.21585 0.93467 0.92463 1.49205 0.91672 1.25955 1.02345 0.96531 0.95149 1.70096 1.35821 0.99968 1.51727 0.85560 0.79819 0.76871 0.79170 1.19124 1.21269 1.19201 1.20609 0.90961 0.99404 1.09964 1.70517 1.00037 1.32238 1.19151 0.89586 0.90789 0.88104 0.73021 0.84563 0.81968 0.90379 0.89168 0.91892 0.75335 0.93420 0.93836 0.93080 0.91519 0.94190 0.98970 0.99325 0.92941 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.43 71.24 0.74 -0.14 16 2 C -0.03 -0.75 7.10 41.36 0.29 -0.46 16 3 C -0.08 -1.69 12.08 66.97 0.81 -0.88 16 4 O -0.21 -6.40 10.52 -8.37 -0.09 -6.49 16 5 C 0.22 6.68 7.90 87.33 0.69 7.37 16 6 C 0.00 0.04 5.87 -20.12 -0.12 -0.08 16 7 C -0.13 -3.20 9.68 22.54 0.22 -2.98 16 8 C -0.07 -1.36 9.67 22.21 0.21 -1.14 16 9 C -0.14 -3.09 5.90 -19.68 -0.12 -3.21 16 10 C -0.11 -1.65 9.56 71.24 0.68 -0.97 16 11 C 0.21 5.73 6.63 38.17 0.25 5.98 16 12 N -0.73 -20.31 5.36 -339.52 -1.82 -22.13 16 13 C 0.14 4.80 4.30 86.38 0.37 5.17 16 14 C -0.08 -3.20 2.37 -10.79 -0.03 -3.23 16 15 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 16 C -0.12 -4.30 8.88 71.98 0.64 -3.66 16 17 C 0.03 1.72 4.45 29.85 0.13 1.86 16 18 C -0.53 -29.09 8.41 25.60 0.22 -28.87 16 19 H 0.07 3.39 7.06 -2.91 -0.02 3.37 16 20 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 21 N -0.94 -56.81 13.29 21.45 0.28 -56.53 16 22 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 C -0.18 -5.66 8.97 22.66 0.20 -5.46 16 27 N -0.49 -14.08 10.91 -293.18 -3.20 -17.27 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.14 3.07 7.83 -2.91 -0.02 3.05 16 33 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 36 H 0.06 0.97 6.53 -2.39 -0.02 0.96 16 37 H 0.41 9.74 5.63 -92.70 -0.52 9.22 16 38 H 0.05 1.70 7.95 -2.39 -0.02 1.68 16 39 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 40 H 0.05 1.89 6.95 -2.39 -0.02 1.87 16 41 H 0.07 1.80 7.18 -2.39 -0.02 1.79 16 42 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.11 3.75 6.57 -2.91 -0.02 3.73 16 Total: -1.00 -70.43 379.86 3.33 -67.10 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.46 Total: 19.93 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 5.67 Total: -30.39 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -4.73 Total: -95.93 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.09 Total: -6.49 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.43 3.33 -67.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal (2) G-P(sol) polarization free energy of solvation -70.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds