Wall clock time and date at job start Tue Mar 31 2020 10:52:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.34547 * 126.08298 * 2 1
4 4 O 1.34775 * 107.27027 * 180.26512 * 3 2 1
5 5 C 1.34428 * 107.69223 * 359.57168 * 4 3 2
6 6 C 1.47842 * 125.72297 * 180.12829 * 5 4 3
7 7 C 1.39614 * 120.10622 * 180.08329 * 6 5 4
8 8 C 1.37995 * 120.00375 * 179.71866 * 7 6 5
9 9 C 1.38241 * 120.22222 * 0.55605 * 8 7 6
10 10 C 1.50703 * 119.89210 * 179.69736 * 9 8 7
11 11 C 1.38995 * 120.21870 * 359.71861 * 9 8 7
12 12 N 1.39694 * 120.00468 * 179.97438 * 11 9 8
13 13 C 1.46498 * 120.00195 * 180.02562 * 12 11 9
14 14 C 1.53005 * 109.47371 * 180.02562 * 13 12 11
15 15 H 1.08999 * 109.46996 * 305.00732 * 14 13 12
16 16 C 1.52998 * 109.46814 * 65.00068 * 14 13 12
17 17 C 1.52998 * 109.47293 * 185.00306 * 14 13 12
18 18 C 1.50699 * 109.46965 * 175.00202 * 17 14 13
19 19 H 1.08000 * 119.99920 * 359.97438 * 18 17 14
20 20 C 1.37879 * 119.99501 * 180.02562 * 18 17 14
21 21 N 1.31515 * 120.00293 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 119.99618 * 179.97438 * 20 18 17
23 23 H 1.48499 * 109.47093 * 60.00168 * 22 20 18
24 24 H 1.48497 * 109.47185 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.47564 * 299.99834 * 22 20 18
26 26 C 1.38674 * 119.98876 * 0.02562 * 11 9 8
27 27 N 1.31215 * 108.55144 * 0.43585 * 5 4 3
28 28 H 1.09001 * 109.46948 * 89.99732 * 1 2 3
29 29 H 1.08996 * 109.47742 * 210.00141 * 1 2 3
30 30 H 1.08994 * 109.47292 * 330.00561 * 1 2 3
31 31 H 1.08002 * 126.36062 * 359.97438 * 3 2 1
32 32 H 1.08004 * 120.00258 * 359.97438 * 7 6 5
33 33 H 1.07996 * 119.88488 * 180.25214 * 8 7 6
34 34 H 1.08995 * 109.47108 * 270.02588 * 10 9 8
35 35 H 1.09000 * 109.46979 * 30.02076 * 10 9 8
36 36 H 1.09000 * 109.47127 * 150.02187 * 10 9 8
37 37 H 0.97006 * 120.00045 * 0.02841 * 12 11 9
38 38 H 1.09001 * 109.47427 * 300.00849 * 13 12 11
39 39 H 1.09004 * 109.46661 * 60.00771 * 13 12 11
40 40 H 1.08998 * 109.47285 * 179.97438 * 16 14 13
41 41 H 1.08996 * 109.47576 * 300.00075 * 16 14 13
42 42 H 1.09007 * 109.47126 * 60.00510 * 16 14 13
43 43 H 1.09000 * 109.47137 * 295.00511 * 17 14 13
44 44 H 1.09001 * 109.46946 * 54.99946 * 17 14 13
45 45 H 0.96998 * 119.99957 * 179.97438 * 21 20 18
46 46 H 1.08004 * 120.10795 * 179.97438 * 26 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2994 1.0874 0.0000
4 8 3.5752 0.6528 -0.0060
5 6 3.5489 -0.6913 0.0001
6 6 4.7321 -1.5777 -0.0007
7 6 4.5683 -2.9642 0.0043
8 6 5.6741 -3.7897 -0.0023
9 6 6.9463 -3.2488 -0.0022
10 6 8.1487 -4.1572 -0.0025
11 6 7.1201 -1.8697 -0.0014
12 7 8.4077 -1.3279 -0.0008
13 6 8.5908 0.1256 0.0007
14 6 10.0857 0.4514 0.0004
15 1 10.5665 -0.0481 0.8415
16 6 10.7133 -0.0343 -1.3076
17 6 10.2781 1.9639 0.1277
18 6 11.7476 2.2747 0.2509
19 1 12.4717 1.4735 0.2400
20 6 12.1673 3.5818 0.3787
21 7 11.2854 4.5573 0.3924
22 14 13.9887 3.9670 0.5322
23 1 14.7016 3.4776 -0.6751
24 1 14.1755 5.4350 0.6556
25 1 14.5371 3.2948 1.7374
26 6 6.0151 -1.0318 -0.0001
27 7 2.2970 -1.0844 0.0000
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3634 -0.8899 0.5138
30 1 -0.3633 0.8900 0.5137
31 1 1.9736 2.1171 -0.0004
32 1 3.5761 -3.3908 0.0091
33 1 5.5452 -4.8619 -0.0025
34 1 8.4384 -4.3769 1.0251
35 1 7.9022 -5.0860 -0.5169
36 1 8.9752 -3.6658 -0.5159
37 1 9.1806 -1.9141 -0.0013
38 1 8.1263 0.5512 -0.8889
39 1 8.1264 0.5494 0.8911
40 1 11.7782 0.1981 -1.3081
41 1 10.5762 -1.1118 -1.3983
42 1 10.2325 0.4652 -2.1488
43 1 9.8753 2.4571 -0.7569
44 1 9.7551 2.3234 1.0139
45 1 11.5807 5.4769 0.4827
46 1 6.1479 0.0400 0.0009
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602495126.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:52:07
Heat of formation + Delta-G solvation = 5.224712 kcal
Electronic energy + Delta-G solvation = -25016.629003 eV
Core-core repulsion = 21484.965984 eV
Total energy + Delta-G solvation = -3531.663019 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-44.32123 -40.71563 -38.16535 -36.26426 -35.73899 -34.52377 -33.69493 -32.11171
-30.47077 -29.02061 -28.58038 -27.43213 -27.14014 -24.99781 -23.83749 -23.00960
-21.92681 -21.72250 -20.71169 -18.83417 -18.56054 -17.74390 -17.51975 -17.04190
-16.56438 -16.24720 -16.06135 -15.69806 -15.30795 -14.93703 -14.85679 -14.50139
-14.28458 -14.22001 -14.17300 -13.88115 -13.79822 -13.40452 -13.18452 -13.13336
-12.99873 -12.78720 -12.71026 -12.35554 -12.27081 -12.13445 -12.09623 -11.99612
-11.70582 -11.64392 -11.19046 -11.07254 -11.05162 -10.54588 -10.26064 -9.24239
-8.30293 -8.18759 -6.28234 -0.35740 0.60159 0.85239 1.40343 1.42609
1.50215 1.69038 1.71096 2.38345 2.48365 2.87899 2.91869 3.15227
3.78978 3.90545 3.94165 4.00815 4.08554 4.14763 4.26753 4.33256
4.41782 4.51776 4.58433 4.72854 4.76708 4.79526 4.80749 4.83805
4.86042 4.87927 4.91954 4.92749 4.98572 5.19188 5.25856 5.29363
5.30661 5.40405 5.44130 5.49788 5.52131 5.57505 5.74376 5.84656
5.85775 6.22581 6.33543 6.65162 6.85007 6.88453 7.40296 8.93212
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013394 B = 0.002819 C = 0.002358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2089.952546 B = 9929.674949 C =11870.436790
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.033 4.033
3 C -0.078 4.078
4 O -0.214 6.214
5 C 0.218 3.782
6 C 0.001 3.999
7 C -0.132 4.132
8 C -0.069 4.069
9 C -0.143 4.143
10 C -0.108 4.108
11 C 0.209 3.791
12 N -0.733 5.733
13 C 0.141 3.859
14 C -0.083 4.083
15 H 0.066 0.934
16 C -0.125 4.125
17 C 0.034 3.966
18 C -0.529 4.529
19 H 0.065 0.935
20 C -0.002 4.002
21 N -0.936 5.936
22 Si 0.961 3.039
23 H -0.266 1.266
24 H -0.287 1.287
25 H -0.267 1.267
26 C -0.185 4.185
27 N -0.489 5.489
28 H 0.086 0.914
29 H 0.073 0.927
30 H 0.100 0.900
31 H 0.254 0.746
32 H 0.137 0.863
33 H 0.163 0.837
34 H 0.078 0.922
35 H 0.090 0.910
36 H 0.062 0.938
37 H 0.408 0.592
38 H 0.048 0.952
39 H 0.043 0.957
40 H 0.050 0.950
41 H 0.066 0.934
42 H 0.039 0.961
43 H -0.008 1.008
44 H -0.012 1.012
45 H 0.262 0.738
46 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.852 -16.230 -1.459 23.442
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.154 4.154
3 C -0.147 4.147
4 O -0.100 6.100
5 C 0.015 3.985
6 C -0.001 4.001
7 C -0.154 4.154
8 C -0.088 4.088
9 C -0.148 4.148
10 C -0.164 4.164
11 C 0.104 3.896
12 N -0.364 5.364
13 C 0.016 3.984
14 C -0.102 4.102
15 H 0.084 0.916
16 C -0.182 4.182
17 C -0.004 4.004
18 C -0.567 4.567
19 H 0.083 0.917
20 C -0.200 4.200
21 N -0.576 5.576
22 Si 0.786 3.214
23 H -0.191 1.191
24 H -0.213 1.213
25 H -0.192 1.192
26 C -0.209 4.209
27 N -0.219 5.219
28 H 0.104 0.896
29 H 0.092 0.908
30 H 0.119 0.881
31 H 0.270 0.730
32 H 0.154 0.846
33 H 0.180 0.820
34 H 0.096 0.904
35 H 0.108 0.892
36 H 0.081 0.919
37 H 0.247 0.753
38 H 0.066 0.934
39 H 0.062 0.938
40 H 0.069 0.931
41 H 0.085 0.915
42 H 0.058 0.942
43 H 0.010 0.990
44 H 0.007 0.993
45 H 0.071 0.929
46 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -16.998 -16.418 -1.453 23.677
hybrid contribution 1.183 1.826 0.135 2.180
sum -15.815 -14.592 -1.318 21.559
Atomic orbital electron populations
1.20232 0.83572 1.04554 1.03958 1.22536 0.99979 0.87703 1.05206
1.25758 0.78877 1.02813 1.07259 1.84551 1.32153 1.23709 1.69580
1.24170 0.93685 0.78927 1.01710 1.17144 0.86588 0.91636 1.04688
1.20973 1.00426 0.90156 1.03807 1.21027 0.89811 1.00918 0.96996
1.19905 0.97248 0.91258 1.06394 1.20723 0.94017 0.98606 1.03085
1.17623 0.85075 0.92188 0.94672 1.44773 1.04371 1.05905 1.81309
1.21244 0.96786 0.80656 0.99732 1.21193 0.92971 0.97260 0.98790
0.91555 1.21640 1.00746 0.99932 0.95894 1.18960 0.95733 0.91004
0.94701 1.21585 0.93467 0.92463 1.49205 0.91672 1.25955 1.02345
0.96531 0.95149 1.70096 1.35821 0.99968 1.51727 0.85560 0.79819
0.76871 0.79170 1.19124 1.21269 1.19201 1.20609 0.90961 0.99404
1.09964 1.70517 1.00037 1.32238 1.19151 0.89586 0.90789 0.88104
0.73021 0.84563 0.81968 0.90379 0.89168 0.91892 0.75335 0.93420
0.93836 0.93080 0.91519 0.94190 0.98970 0.99325 0.92941 0.86985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.89 10.43 71.24 0.74 -0.14 16
2 C -0.03 -0.75 7.10 41.36 0.29 -0.46 16
3 C -0.08 -1.69 12.08 66.97 0.81 -0.88 16
4 O -0.21 -6.40 10.52 -8.37 -0.09 -6.49 16
5 C 0.22 6.68 7.90 87.33 0.69 7.37 16
6 C 0.00 0.04 5.87 -20.12 -0.12 -0.08 16
7 C -0.13 -3.20 9.68 22.54 0.22 -2.98 16
8 C -0.07 -1.36 9.67 22.21 0.21 -1.14 16
9 C -0.14 -3.09 5.90 -19.68 -0.12 -3.21 16
10 C -0.11 -1.65 9.56 71.24 0.68 -0.97 16
11 C 0.21 5.73 6.63 38.17 0.25 5.98 16
12 N -0.73 -20.31 5.36 -339.52 -1.82 -22.13 16
13 C 0.14 4.80 4.30 86.38 0.37 5.17 16
14 C -0.08 -3.20 2.37 -10.79 -0.03 -3.23 16
15 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16
16 C -0.12 -4.30 8.88 71.98 0.64 -3.66 16
17 C 0.03 1.72 4.45 29.85 0.13 1.86 16
18 C -0.53 -29.09 8.41 25.60 0.22 -28.87 16
19 H 0.07 3.39 7.06 -2.91 -0.02 3.37 16
20 C 0.00 -0.14 5.46 84.65 0.46 0.33 16
21 N -0.94 -56.81 13.29 21.45 0.28 -56.53 16
22 Si 0.96 43.76 29.54 68.60 2.03 45.79 16
23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
24 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
26 C -0.18 -5.66 8.97 22.66 0.20 -5.46 16
27 N -0.49 -14.08 10.91 -293.18 -3.20 -17.27 16
28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16
32 H 0.14 3.07 7.83 -2.91 -0.02 3.05 16
33 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16
34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
35 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16
36 H 0.06 0.97 6.53 -2.39 -0.02 0.96 16
37 H 0.41 9.74 5.63 -92.70 -0.52 9.22 16
38 H 0.05 1.70 7.95 -2.39 -0.02 1.68 16
39 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16
40 H 0.05 1.89 6.95 -2.39 -0.02 1.87 16
41 H 0.07 1.80 7.18 -2.39 -0.02 1.79 16
42 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16
43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16
44 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16
45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16
46 H 0.11 3.75 6.57 -2.91 -0.02 3.73 16
Total: -1.00 -70.43 379.86 3.33 -67.10
By element:
Atomic # 1 Polarization: 19.47 SS G_CDS: 0.46 Total: 19.93 kcal
Atomic # 6 Polarization: -36.05 SS G_CDS: 5.67 Total: -30.39 kcal
Atomic # 7 Polarization: -91.20 SS G_CDS: -4.73 Total: -95.93 kcal
Atomic # 8 Polarization: -6.40 SS G_CDS: -0.09 Total: -6.49 kcal
Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal
Total: -70.43 3.33 -67.10 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602495126.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal
(2) G-P(sol) polarization free energy of solvation -70.430 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.896 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.225 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds