Wall clock time and date at job start Tue Mar 31 2020 11:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 115.55217 * 2 1 4 4 C 1.38233 * 119.99420 * 268.13236 * 3 2 1 5 5 C 1.38235 * 119.99754 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00002 * 359.95199 * 5 4 3 7 7 C 1.38239 * 120.00031 * 0.27622 * 6 5 4 8 8 C 1.38230 * 120.00250 * 88.10515 * 3 2 1 9 9 C 1.52998 * 117.49714 * 214.32574 * 2 1 3 10 10 C 1.52999 * 117.51641 * 145.69692 * 2 1 3 11 11 H 1.08999 * 117.50058 * 359.97438 * 10 2 1 12 12 N 1.46498 * 117.50057 * 214.97000 * 10 2 1 13 13 C 1.34778 * 120.00178 * 149.68982 * 12 10 2 14 14 O 1.21585 * 119.99973 * 5.17855 * 13 12 10 15 15 N 1.34780 * 119.99772 * 185.18029 * 13 12 10 16 16 C 1.46505 * 119.99595 * 174.86747 * 15 13 12 17 17 C 1.52996 * 109.46696 * 184.00708 * 16 15 13 18 18 C 1.50703 * 115.55106 * 306.61500 * 17 16 15 19 19 H 1.08001 * 119.99909 * 144.44281 * 18 17 16 20 20 C 1.37871 * 119.99761 * 324.43206 * 18 17 16 21 21 N 1.31512 * 120.00303 * 351.06654 * 20 18 17 22 22 Si 1.86807 * 119.99868 * 171.05649 * 20 18 17 23 23 H 1.48501 * 109.46637 * 65.00693 * 22 20 18 24 24 H 1.48501 * 109.47108 * 185.00313 * 22 20 18 25 25 H 1.48494 * 109.47269 * 305.00713 * 22 20 18 26 26 C 1.53004 * 117.49834 * 160.94640 * 17 16 15 27 27 C 1.52998 * 117.49905 * 92.28937 * 17 16 15 28 28 H 1.09002 * 109.47001 * 34.42020 * 1 2 3 29 29 H 1.09002 * 109.47285 * 154.41923 * 1 2 3 30 30 H 1.09002 * 109.47546 * 274.42058 * 1 2 3 31 31 H 1.08002 * 120.00468 * 359.97190 * 4 3 2 32 32 H 1.08005 * 120.00124 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.00446 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.00032 * 179.72503 * 7 6 5 35 35 H 1.08005 * 119.99960 * 0.02562 * 8 3 2 36 36 H 1.08994 * 117.50256 * 359.97438 * 9 2 1 37 37 H 1.09011 * 117.49752 * 144.97477 * 9 2 1 38 38 H 0.97006 * 119.99957 * 329.68941 * 12 10 2 39 39 H 0.96993 * 120.00085 * 354.86554 * 15 13 12 40 40 H 1.09004 * 109.46721 * 304.00338 * 16 15 13 41 41 H 1.08996 * 109.47227 * 64.00201 * 16 15 13 42 42 H 0.97003 * 120.00444 * 185.03678 * 21 20 18 43 43 H 1.09005 * 117.49634 * 359.97438 * 26 17 16 44 44 H 1.08995 * 117.49827 * 145.01630 * 26 17 16 45 45 H 1.09004 * 117.49952 * 214.97175 * 27 17 16 46 46 H 1.09000 * 117.50394 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.5133 1.9663 -1.1966 5 6 3.1100 3.2132 -1.1966 6 6 3.3725 3.8538 -0.0002 7 6 3.0435 3.2451 1.1966 8 6 2.4424 2.0003 1.1964 9 6 2.2363 -1.1208 -0.7653 10 6 2.2368 -1.1209 0.7647 11 1 1.6119 -1.8584 1.2684 12 7 3.4937 -0.7904 1.4408 13 6 3.8473 -1.4458 2.5642 14 8 3.1719 -2.3742 2.9645 15 7 4.9495 -1.0719 3.2439 16 6 5.2722 -1.7086 4.5232 17 6 6.5066 -1.0381 5.1295 18 6 7.7151 -0.9683 4.2319 19 1 8.3685 -0.1093 4.2718 20 6 7.9868 -2.0012 3.3600 21 7 7.2996 -3.1202 3.4317 22 14 9.3308 -1.8110 2.0766 23 1 10.6465 -1.6825 2.7531 24 1 9.3433 -3.0041 1.1924 25 1 9.0711 -0.5955 1.2642 26 6 6.7496 -1.2285 6.6280 27 6 6.2756 0.1259 6.0952 28 1 -0.3633 0.8478 -0.5809 29 1 -0.3634 -0.9269 -0.4437 30 1 -0.3634 0.0792 1.0246 31 1 2.3082 1.4657 -2.1314 32 1 3.3708 3.6870 -2.1315 33 1 3.8384 4.8282 -0.0001 34 1 3.2527 3.7437 2.1314 35 1 2.1820 1.5263 2.1313 36 1 1.6112 -1.8584 -1.2684 37 1 3.1711 -0.8746 -1.2692 38 1 4.0715 -0.0998 1.0799 39 1 5.5290 -0.3813 2.8860 40 1 4.4287 -1.6016 5.2053 41 1 5.4762 -2.7670 4.3611 42 1 7.5383 -3.8730 2.8683 43 1 6.0298 -1.8312 7.1821 44 1 7.7836 -1.3030 6.9647 45 1 6.9980 0.9420 6.0817 46 1 5.2443 0.4143 6.2984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619529740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:51 Heat of formation + Delta-G solvation = 43.171253 kcal Electronic energy + Delta-G solvation = -26325.730965 eV Core-core repulsion = 22795.713431 eV Total energy + Delta-G solvation = -3530.017533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.17767 -38.87868 -37.36483 -36.53773 -33.10844 -32.58488 -32.12082 -30.91371 -30.48024 -28.25368 -25.95043 -25.14232 -23.17096 -22.77812 -21.63764 -21.19575 -20.09560 -19.51962 -19.23364 -17.59923 -17.02194 -16.22642 -15.85419 -14.92834 -14.86409 -14.78675 -14.42821 -14.34213 -14.11442 -13.71469 -13.45204 -13.26392 -13.04657 -12.87529 -12.76812 -12.52645 -12.25503 -11.84087 -11.80606 -11.54251 -11.18249 -11.11078 -11.04115 -10.86527 -10.72857 -10.51052 -10.25602 -9.95693 -9.68177 -9.29529 -9.09563 -8.95823 -8.81636 -8.80935 -8.37680 -8.20721 -7.68373 -6.03995 -4.16542 1.29796 1.36790 3.21624 3.29988 3.30369 3.31136 3.60568 3.73256 4.15072 4.29668 4.54297 4.71846 4.88354 4.89760 4.95348 4.99182 5.10287 5.13885 5.18581 5.44701 5.51335 5.52889 5.67526 5.71873 5.74886 5.77996 5.97987 6.01146 6.03559 6.07956 6.11807 6.33048 6.44620 6.49723 6.57659 6.60199 6.63604 6.74028 6.90864 6.95420 6.98355 7.08430 7.29144 7.56777 7.64681 7.79706 7.96513 8.33873 8.77726 8.95134 9.44287 9.45723 10.91296 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.004099 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.402680 B = 6829.295169 C = 7066.548375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.112 4.112 3 C -0.045 4.045 4 C -0.112 4.112 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.118 4.118 8 C -0.102 4.102 9 C -0.184 4.184 10 C 0.132 3.868 11 H 0.139 0.861 12 N -0.724 5.724 13 C 0.702 3.298 14 O -0.606 6.606 15 N -0.704 5.704 16 C 0.181 3.819 17 C 0.039 3.961 18 C -0.501 4.501 19 H 0.060 0.940 20 C 0.077 3.923 21 N -0.864 5.864 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.196 4.196 27 C -0.212 4.212 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.394 0.606 39 H 0.396 0.604 40 H 0.022 0.978 41 H 0.107 0.893 42 H 0.264 0.736 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.802 10.253 -9.381 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.114 4.114 3 C -0.046 4.046 4 C -0.130 4.130 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.136 4.136 8 C -0.120 4.120 9 C -0.223 4.223 10 C 0.024 3.976 11 H 0.157 0.843 12 N -0.377 5.377 13 C 0.402 3.598 14 O -0.486 6.486 15 N -0.355 5.355 16 C 0.058 3.942 17 C 0.039 3.961 18 C -0.538 4.538 19 H 0.078 0.922 20 C -0.128 4.128 21 N -0.499 5.499 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.235 4.235 27 C -0.249 4.249 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.228 0.772 39 H 0.230 0.770 40 H 0.040 0.960 41 H 0.125 0.875 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.443 9.210 -9.051 17.253 hybrid contribution 1.499 0.788 -1.029 1.981 sum -9.944 9.998 -10.080 17.333 Atomic orbital electron populations 1.21268 0.90859 1.01980 1.02206 1.20798 0.94896 0.88534 1.07198 1.18990 0.98462 0.94009 0.93106 1.20988 0.99136 0.95293 0.97606 1.21101 0.99629 0.95400 0.98010 1.21150 1.00325 0.99989 0.92655 1.21186 0.98789 0.95445 0.98172 1.21088 0.98267 0.94749 0.97919 1.23721 1.02363 1.00116 0.96094 1.21427 0.87591 0.98320 0.90278 0.84330 1.44517 1.22730 1.42641 1.27839 1.15934 0.82172 0.82010 0.79713 1.90831 1.56351 1.30882 1.70519 1.44938 1.24347 1.42621 1.23629 1.20859 0.92462 1.00322 0.80589 1.19185 0.94874 0.94243 0.87834 1.20423 1.08743 1.05050 1.19582 0.92179 1.24967 0.95870 0.95181 0.96814 1.69843 1.38562 1.02494 1.38999 0.86692 0.82288 0.77615 0.81672 1.20296 1.21236 1.20082 1.22916 1.00004 0.98845 1.01686 1.22948 0.99246 0.92326 1.10384 0.92171 0.91945 0.91934 0.86245 0.86326 0.86319 0.85999 0.85902 0.87932 0.88583 0.77209 0.77027 0.95962 0.87544 0.92582 0.91511 0.90238 0.90728 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.84 37.16 0.37 -0.64 16 2 C -0.11 -1.27 2.17 -155.66 -0.34 -1.60 16 3 C -0.05 -0.53 4.28 -104.63 -0.45 -0.98 16 4 C -0.11 -1.19 9.53 -39.58 -0.38 -1.57 16 5 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 7 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 8 C -0.10 -1.24 8.42 -39.59 -0.33 -1.58 16 9 C -0.18 -2.10 9.61 -26.73 -0.26 -2.36 16 10 C 0.13 1.87 6.08 -67.93 -0.41 1.46 16 11 H 0.14 2.15 7.38 -51.93 -0.38 1.76 16 12 N -0.72 -11.92 4.74 -58.68 -0.28 -12.20 16 13 C 0.70 14.77 8.55 -86.91 -0.74 14.02 16 14 O -0.61 -14.86 15.92 5.29 0.08 -14.78 16 15 N -0.70 -15.23 5.30 -65.22 -0.35 -15.58 16 16 C 0.18 4.33 4.73 -4.04 -0.02 4.31 16 17 C 0.04 0.93 2.00 -155.66 -0.31 0.62 16 18 C -0.50 -12.71 8.26 -34.44 -0.28 -12.99 16 19 H 0.06 1.53 7.83 -52.49 -0.41 1.11 16 20 C 0.08 1.97 5.16 -17.82 -0.09 1.88 16 21 N -0.86 -23.32 10.71 55.43 0.59 -22.73 16 22 Si 0.89 20.15 29.55 -169.99 -5.02 15.13 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.20 -4.33 9.96 -26.69 -0.27 -4.59 16 27 C -0.21 -4.42 9.92 -26.70 -0.26 -4.68 16 28 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 37 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 38 H 0.39 6.02 7.62 -40.82 -0.31 5.71 16 39 H 0.40 8.24 7.93 -40.82 -0.32 7.92 16 40 H 0.02 0.52 8.08 -51.93 -0.42 0.11 16 41 H 0.11 2.92 6.04 -51.93 -0.31 2.60 16 42 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 45 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -28.91 382.56 -11.37 -40.28 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -7.20 Total: 17.84 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -4.97 Total: -13.73 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.03 Total: -50.50 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.08 Total: -14.78 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.91 -11.37 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.455 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds