Wall clock time and date at job start Tue Mar 31 2020 11:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 115.55217 * 2 1 4 4 C 1.38233 * 119.99420 * 268.13236 * 3 2 1 5 5 C 1.38235 * 119.99754 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00002 * 359.95199 * 5 4 3 7 7 C 1.38239 * 120.00031 * 0.27622 * 6 5 4 8 8 C 1.38230 * 120.00250 * 88.10515 * 3 2 1 9 9 C 1.52998 * 117.49714 * 214.32574 * 2 1 3 10 10 C 1.52999 * 117.51641 * 145.69692 * 2 1 3 11 11 H 1.08999 * 117.50058 * 359.97438 * 10 2 1 12 12 N 1.46498 * 117.50057 * 214.97000 * 10 2 1 13 13 C 1.34778 * 120.00178 * 149.68982 * 12 10 2 14 14 O 1.21585 * 119.99973 * 5.17855 * 13 12 10 15 15 N 1.34780 * 119.99772 * 185.18029 * 13 12 10 16 16 C 1.46505 * 119.99595 * 174.86747 * 15 13 12 17 17 C 1.52996 * 109.46696 * 184.00708 * 16 15 13 18 18 C 1.50703 * 115.55106 * 306.61500 * 17 16 15 19 19 H 1.08001 * 119.99909 * 144.44281 * 18 17 16 20 20 C 1.37871 * 119.99761 * 324.43206 * 18 17 16 21 21 N 1.31512 * 120.00303 * 351.06654 * 20 18 17 22 22 Si 1.86807 * 119.99868 * 171.05649 * 20 18 17 23 23 H 1.48501 * 109.46637 * 65.00693 * 22 20 18 24 24 H 1.48501 * 109.47108 * 185.00313 * 22 20 18 25 25 H 1.48494 * 109.47269 * 305.00713 * 22 20 18 26 26 C 1.53004 * 117.49834 * 160.94640 * 17 16 15 27 27 C 1.52998 * 117.49905 * 92.28937 * 17 16 15 28 28 H 1.09002 * 109.47001 * 34.42020 * 1 2 3 29 29 H 1.09002 * 109.47285 * 154.41923 * 1 2 3 30 30 H 1.09002 * 109.47546 * 274.42058 * 1 2 3 31 31 H 1.08002 * 120.00468 * 359.97190 * 4 3 2 32 32 H 1.08005 * 120.00124 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.00446 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.00032 * 179.72503 * 7 6 5 35 35 H 1.08005 * 119.99960 * 0.02562 * 8 3 2 36 36 H 1.08994 * 117.50256 * 359.97438 * 9 2 1 37 37 H 1.09011 * 117.49752 * 144.97477 * 9 2 1 38 38 H 0.97006 * 119.99957 * 329.68941 * 12 10 2 39 39 H 0.96993 * 120.00085 * 354.86554 * 15 13 12 40 40 H 1.09004 * 109.46721 * 304.00338 * 16 15 13 41 41 H 1.08996 * 109.47227 * 64.00201 * 16 15 13 42 42 H 0.97003 * 120.00444 * 185.03678 * 21 20 18 43 43 H 1.09005 * 117.49634 * 359.97438 * 26 17 16 44 44 H 1.08995 * 117.49827 * 145.01630 * 26 17 16 45 45 H 1.09004 * 117.49952 * 214.97175 * 27 17 16 46 46 H 1.09000 * 117.50394 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.5133 1.9663 -1.1966 5 6 3.1100 3.2132 -1.1966 6 6 3.3725 3.8538 -0.0002 7 6 3.0435 3.2451 1.1966 8 6 2.4424 2.0003 1.1964 9 6 2.2363 -1.1208 -0.7653 10 6 2.2368 -1.1209 0.7647 11 1 1.6119 -1.8584 1.2684 12 7 3.4937 -0.7904 1.4408 13 6 3.8473 -1.4458 2.5642 14 8 3.1719 -2.3742 2.9645 15 7 4.9495 -1.0719 3.2439 16 6 5.2722 -1.7086 4.5232 17 6 6.5066 -1.0381 5.1295 18 6 7.7151 -0.9683 4.2319 19 1 8.3685 -0.1093 4.2718 20 6 7.9868 -2.0012 3.3600 21 7 7.2996 -3.1202 3.4317 22 14 9.3308 -1.8110 2.0766 23 1 10.6465 -1.6825 2.7531 24 1 9.3433 -3.0041 1.1924 25 1 9.0711 -0.5955 1.2642 26 6 6.7496 -1.2285 6.6280 27 6 6.2756 0.1259 6.0952 28 1 -0.3633 0.8478 -0.5809 29 1 -0.3634 -0.9269 -0.4437 30 1 -0.3634 0.0792 1.0246 31 1 2.3082 1.4657 -2.1314 32 1 3.3708 3.6870 -2.1315 33 1 3.8384 4.8282 -0.0001 34 1 3.2527 3.7437 2.1314 35 1 2.1820 1.5263 2.1313 36 1 1.6112 -1.8584 -1.2684 37 1 3.1711 -0.8746 -1.2692 38 1 4.0715 -0.0998 1.0799 39 1 5.5290 -0.3813 2.8860 40 1 4.4287 -1.6016 5.2053 41 1 5.4762 -2.7670 4.3611 42 1 7.5383 -3.8730 2.8683 43 1 6.0298 -1.8312 7.1821 44 1 7.7836 -1.3030 6.9647 45 1 6.9980 0.9420 6.0817 46 1 5.2443 0.4143 6.2984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619529740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:50 Heat of formation + Delta-G solvation = 28.702613 kcal Electronic energy + Delta-G solvation = -26326.358372 eV Core-core repulsion = 22795.713431 eV Total energy + Delta-G solvation = -3530.644941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.31916 -40.26689 -38.67187 -38.05344 -34.84628 -34.19526 -33.87967 -31.73523 -31.37023 -29.17214 -27.80045 -26.98396 -24.00977 -23.73593 -22.98382 -22.66113 -21.66191 -21.10561 -20.43912 -19.24697 -18.22733 -17.75312 -17.03122 -16.74151 -16.15308 -16.03852 -15.77914 -15.74654 -15.23056 -15.15786 -14.79639 -14.31357 -14.24642 -14.19413 -13.86419 -13.64432 -13.53746 -13.41317 -13.02563 -12.86606 -12.75624 -12.68654 -12.32888 -12.20429 -12.03484 -11.98321 -11.72955 -11.49597 -11.15755 -11.00379 -10.90277 -10.63629 -10.14318 -9.90136 -9.77584 -9.61820 -9.26681 -7.99281 -6.17589 0.46427 0.53513 1.42098 1.45042 1.51479 1.87085 2.22711 2.41475 2.87192 2.90860 3.02379 3.46205 3.63494 3.69687 3.80161 3.91750 4.15505 4.20925 4.23179 4.27297 4.33561 4.54147 4.63168 4.70880 4.73288 4.78096 4.81378 4.86368 4.93364 4.95536 4.97161 5.00803 5.13651 5.19067 5.20200 5.30179 5.32883 5.54009 5.60647 5.61600 5.66731 5.69228 5.74711 5.89801 5.96242 6.14266 6.21003 6.39559 6.83004 7.30781 7.45864 7.78464 8.93465 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.004099 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.402680 B = 6829.295169 C = 7066.548375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.089 4.089 3 C -0.057 4.057 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.129 4.129 8 C -0.119 4.119 9 C -0.165 4.165 10 C 0.093 3.907 11 H 0.120 0.880 12 N -0.706 5.706 13 C 0.699 3.301 14 O -0.646 6.646 15 N -0.702 5.702 16 C 0.195 3.805 17 C 0.011 3.989 18 C -0.506 4.506 19 H 0.059 0.941 20 C 0.038 3.962 21 N -0.891 5.891 22 Si 0.945 3.055 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.264 1.264 26 C -0.198 4.198 27 C -0.184 4.184 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.401 0.599 39 H 0.399 0.601 40 H 0.018 0.982 41 H 0.069 0.931 42 H 0.257 0.743 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.825 12.331 -11.308 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.091 4.091 3 C -0.057 4.057 4 C -0.133 4.133 5 C -0.142 4.142 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.137 4.137 9 C -0.203 4.203 10 C -0.014 4.014 11 H 0.138 0.862 12 N -0.359 5.359 13 C 0.399 3.601 14 O -0.529 6.529 15 N -0.354 5.354 16 C 0.070 3.930 17 C 0.010 3.990 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.164 4.164 21 N -0.528 5.528 22 Si 0.771 3.229 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.189 1.189 26 C -0.237 4.237 27 C -0.221 4.221 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.237 0.763 39 H 0.234 0.766 40 H 0.036 0.964 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.472 11.338 -11.011 19.530 hybrid contribution 1.471 0.196 -0.417 1.541 sum -10.002 11.534 -11.428 19.070 Atomic orbital electron populations 1.21315 0.89457 1.03279 1.02240 1.20810 0.95777 0.87972 1.04550 1.19061 0.99105 0.94121 0.93448 1.21197 0.98798 0.95666 0.97670 1.21438 0.98646 0.95112 0.98956 1.21443 0.99862 1.00803 0.92327 1.21354 0.98884 0.95253 0.99179 1.21033 0.99583 0.95539 0.97539 1.23795 1.02723 1.00286 0.93522 1.21577 0.87117 1.00711 0.91972 0.86238 1.44305 1.23485 1.41794 1.26356 1.16085 0.81628 0.81806 0.80550 1.90794 1.57479 1.32777 1.71840 1.44779 1.24730 1.42581 1.23261 1.20489 0.92486 0.98466 0.81514 1.19230 0.94422 0.96811 0.88496 1.20619 1.09099 1.04745 1.19856 0.92290 1.25556 0.97652 0.94847 0.98339 1.70024 1.39970 1.03016 1.39757 0.85818 0.80040 0.77465 0.79577 1.20102 1.22001 1.18913 1.22931 1.00196 1.00079 1.00454 1.22933 1.00330 0.91631 1.07240 0.90971 0.90531 0.92567 0.84621 0.83888 0.84286 0.85368 0.87730 0.85856 0.88364 0.76350 0.76587 0.96383 0.91289 0.93305 0.90781 0.90525 0.89711 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.84 71.98 0.71 -1.13 16 2 C -0.09 -1.90 2.17 -52.93 -0.12 -2.01 16 3 C -0.06 -1.24 4.28 -19.87 -0.08 -1.33 16 4 C -0.12 -2.14 9.53 22.27 0.21 -1.93 16 5 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 6 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 7 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 8 C -0.12 -2.83 8.42 22.27 0.19 -2.65 16 9 C -0.16 -3.46 9.61 30.59 0.29 -3.17 16 10 C 0.09 2.64 6.08 44.99 0.27 2.91 16 11 H 0.12 3.85 7.38 -2.39 -0.02 3.83 16 12 N -0.71 -23.58 4.74 -457.82 -2.17 -25.75 16 13 C 0.70 30.33 8.55 179.05 1.53 31.86 16 14 O -0.65 -33.02 15.92 -3.98 -0.06 -33.09 16 15 N -0.70 -31.04 5.30 -478.53 -2.53 -33.58 16 16 C 0.20 9.56 4.73 86.38 0.41 9.97 16 17 C 0.01 0.53 2.00 -52.93 -0.11 0.42 16 18 C -0.51 -25.54 8.26 25.60 0.21 -25.32 16 19 H 0.06 2.94 7.83 -2.91 -0.02 2.91 16 20 C 0.04 1.96 5.16 84.65 0.44 2.40 16 21 N -0.89 -49.21 10.71 21.44 0.23 -48.98 16 22 Si 0.94 41.18 29.55 68.60 2.03 43.21 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 C -0.20 -8.64 9.96 30.62 0.30 -8.33 16 27 C -0.18 -7.41 9.92 30.62 0.30 -7.11 16 28 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 29 H 0.08 1.12 7.90 -2.39 -0.02 1.10 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.10 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.12 2.09 8.05 -2.39 -0.02 2.08 16 37 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.40 12.22 7.62 -92.70 -0.71 11.51 16 39 H 0.40 16.80 7.93 -92.71 -0.74 16.06 16 40 H 0.02 0.88 8.08 -2.38 -0.02 0.86 16 41 H 0.07 3.95 6.04 -2.39 -0.01 3.93 16 42 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 43 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 44 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 45 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 46 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -62.92 382.56 2.27 -60.65 By element: Atomic # 1 Polarization: 49.88 SS G_CDS: -0.46 Total: 49.42 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 5.24 Total: -11.89 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.47 Total: -108.30 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.06 Total: -33.09 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -62.92 2.27 -60.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.352 kcal (2) G-P(sol) polarization free energy of solvation -62.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds