Wall clock time and date at job start Tue Mar 31 2020 11:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 115.54650 * 2 1 4 4 C 1.38233 * 120.00471 * 271.46931 * 3 2 1 5 5 C 1.38231 * 120.00320 * 180.25353 * 4 3 2 6 6 C 1.38242 * 119.99784 * 359.51792 * 5 4 3 7 7 C 1.38224 * 120.00060 * 0.26841 * 6 5 4 8 8 C 1.38232 * 119.99821 * 91.25800 * 3 2 1 9 9 C 1.52993 * 117.50476 * 145.67366 * 2 1 3 10 10 C 1.52997 * 60.00466 * 107.51465 * 9 2 1 11 11 H 1.08995 * 117.49589 * 252.51815 * 10 9 2 12 12 N 1.46490 * 117.49858 * 107.48983 * 10 9 2 13 13 C 1.34776 * 120.00370 * 137.48829 * 12 10 9 14 14 O 1.21595 * 119.99310 * 359.97438 * 13 12 10 15 15 N 1.34772 * 120.00540 * 179.97438 * 13 12 10 16 16 C 1.46502 * 120.00092 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47258 * 184.43130 * 16 15 13 18 18 C 1.50702 * 115.54874 * 65.08547 * 17 16 15 19 19 H 1.07995 * 120.00351 * 264.70228 * 18 17 16 20 20 C 1.37880 * 119.99569 * 84.70135 * 18 17 16 21 21 N 1.31517 * 120.00071 * 1.89729 * 20 18 17 22 22 Si 1.86797 * 119.99835 * 181.90268 * 20 18 17 23 23 H 1.48503 * 109.47330 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47413 * 119.99806 * 22 20 18 25 25 H 1.48497 * 109.47233 * 239.99999 * 22 20 18 26 26 C 1.52996 * 117.49806 * 279.42042 * 17 16 15 27 27 C 1.52999 * 117.50199 * 210.76210 * 17 16 15 28 28 H 1.09001 * 109.47361 * 85.58585 * 1 2 3 29 29 H 1.09012 * 109.46535 * 205.57938 * 1 2 3 30 30 H 1.09000 * 109.47463 * 325.57289 * 1 2 3 31 31 H 1.08001 * 119.99639 * 0.04002 * 4 3 2 32 32 H 1.07998 * 120.00345 * 179.78041 * 5 4 3 33 33 H 1.07995 * 119.99804 * 180.25392 * 6 5 4 34 34 H 1.08004 * 120.00263 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.00304 * 359.97438 * 8 3 2 36 36 H 1.09005 * 117.50355 * 215.00646 * 9 2 1 37 37 H 1.09005 * 117.49916 * 359.97438 * 9 2 1 38 38 H 0.97003 * 120.00553 * 317.48021 * 12 10 9 39 39 H 0.97000 * 119.99801 * 359.97438 * 15 13 12 40 40 H 1.09000 * 109.47151 * 304.43501 * 16 15 13 41 41 H 1.09000 * 109.47147 * 64.43198 * 16 15 13 42 42 H 0.96998 * 119.99539 * 185.01245 * 21 20 18 43 43 H 1.09004 * 117.50164 * 0.02562 * 26 17 16 44 44 H 1.09007 * 117.49819 * 145.01709 * 26 17 16 45 45 H 1.08996 * 117.49895 * 214.98022 * 27 17 16 46 46 H 1.09006 * 117.49391 * 359.97391 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 6 2.4503 1.9966 -1.1967 5 6 3.0512 3.2415 -1.1968 6 6 3.3726 3.8539 0.0002 7 6 3.0982 3.2190 1.1969 8 6 2.5016 1.9719 1.1969 9 6 2.2365 -1.1207 0.7652 10 6 2.2370 -1.1209 -0.7647 11 1 1.6120 -1.8585 -1.2681 12 7 3.4938 -0.7902 -1.4408 13 6 3.8889 -1.5020 -2.5149 14 8 3.2022 -2.4190 -2.9225 15 7 5.0449 -1.1975 -3.1372 16 6 5.4745 -1.9716 -4.3044 17 6 6.8595 -1.4977 -4.7492 18 6 7.9769 -1.7444 -3.7684 19 1 8.2743 -0.9659 -3.0816 20 6 8.6193 -2.9642 -3.7481 21 7 8.2824 -3.8994 -4.6092 22 14 9.9681 -3.2886 -2.4972 23 1 10.1564 -2.0845 -1.6487 24 1 9.5846 -4.4414 -1.6432 25 1 11.2362 -3.5976 -3.2054 26 6 6.9324 -0.2268 -5.5980 27 6 7.1938 -1.5919 -6.2392 28 1 -0.3634 0.0791 -1.0246 29 1 -0.3633 -0.9271 0.4438 30 1 -0.3634 0.8476 0.5810 31 1 2.1952 1.5200 -2.1317 32 1 3.2657 3.7375 -2.1318 33 1 3.8383 4.8283 0.0002 34 1 3.3497 3.6972 2.1321 35 1 2.2869 1.4760 2.1320 36 1 3.1714 -0.8746 1.2688 37 1 1.6114 -1.8579 1.2691 38 1 4.0418 -0.0588 -1.1155 39 1 5.5924 -0.4657 -2.8123 40 1 5.5188 -3.0289 -4.0429 41 1 4.7629 -1.8281 -5.1176 42 1 8.6822 -4.7811 -4.5488 43 1 5.9937 0.2719 -5.8392 44 1 7.7888 0.4306 -5.4473 45 1 8.2218 -1.8321 -6.5102 46 1 6.4269 -1.9920 -6.9027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619529742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:02 Heat of formation + Delta-G solvation = 39.044985 kcal Electronic energy + Delta-G solvation = -25877.890623 eV Core-core repulsion = 22347.694161 eV Total energy + Delta-G solvation = -3530.196462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.31021 -39.06704 -37.45961 -36.57998 -33.34860 -32.75918 -31.93350 -31.00675 -30.58790 -28.35244 -26.19167 -25.08536 -23.26511 -22.88057 -21.76716 -21.15300 -20.26459 -19.62600 -19.36895 -17.74077 -17.11358 -16.26040 -15.88077 -15.02209 -14.95374 -14.78078 -14.62658 -14.42176 -14.25143 -13.80582 -13.54515 -13.36374 -13.16032 -12.97503 -12.87634 -12.65403 -12.34015 -11.97476 -11.90951 -11.54420 -11.27548 -11.21807 -10.99228 -10.92935 -10.85174 -10.51734 -10.24468 -10.03814 -9.73560 -9.45352 -9.05388 -9.03907 -8.91856 -8.54926 -8.45495 -8.21791 -7.94971 -6.06319 -4.14878 1.20324 1.27200 3.10694 3.26240 3.35139 3.36877 3.45755 3.63797 3.96508 4.36995 4.44217 4.59455 4.77021 4.83839 4.88269 4.90157 5.01703 5.05766 5.22909 5.35622 5.37034 5.43954 5.59070 5.63900 5.67108 5.69494 5.89625 5.91772 5.95323 6.03746 6.05342 6.35112 6.35892 6.40204 6.48972 6.50108 6.58003 6.70602 6.79552 6.85271 6.87786 7.11913 7.32622 7.43855 7.47168 7.61620 7.82831 8.35492 8.64400 8.86273 9.19372 9.52172 11.01902 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.003440 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.911489 B = 8138.321455 C = 8360.914675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C -0.047 4.047 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.122 4.122 8 C -0.111 4.111 9 C -0.183 4.183 10 C 0.129 3.871 11 H 0.140 0.860 12 N -0.722 5.722 13 C 0.702 3.298 14 O -0.602 6.602 15 N -0.719 5.719 16 C 0.183 3.817 17 C 0.025 3.975 18 C -0.496 4.496 19 H 0.059 0.941 20 C 0.073 3.927 21 N -0.875 5.875 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.212 4.212 27 C -0.143 4.143 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.395 0.605 39 H 0.395 0.605 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.261 0.739 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 12.743 10.645 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.111 4.111 3 C -0.047 4.047 4 C -0.123 4.123 5 C -0.136 4.136 6 C -0.141 4.141 7 C -0.140 4.140 8 C -0.129 4.129 9 C -0.222 4.222 10 C 0.021 3.979 11 H 0.157 0.843 12 N -0.375 5.375 13 C 0.402 3.598 14 O -0.481 6.481 15 N -0.370 5.370 16 C 0.059 3.941 17 C 0.024 3.976 18 C -0.533 4.533 19 H 0.077 0.923 20 C -0.131 4.131 21 N -0.511 5.511 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.249 4.249 27 C -0.181 4.181 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.230 0.770 39 H 0.228 0.772 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.337 11.685 10.090 20.402 hybrid contribution 1.388 0.423 1.057 1.795 sum -11.949 12.108 11.147 20.339 Atomic orbital electron populations 1.21283 0.90755 1.02100 1.02275 1.20774 0.94959 0.88454 1.06925 1.19001 0.98518 0.94047 0.93142 1.21095 0.98459 0.94883 0.97908 1.21188 0.98856 0.95389 0.98201 1.21162 1.00258 1.00009 0.92639 1.21121 0.99459 0.95387 0.98066 1.21002 0.99028 0.95244 0.97630 1.23745 1.02413 1.00060 0.95983 1.21461 0.87440 0.98648 0.90385 0.84258 1.44524 1.23676 1.37486 1.31834 1.15978 0.82157 0.82019 0.79659 1.90866 1.56436 1.32599 1.68193 1.45128 1.21290 1.37543 1.33073 1.20856 0.93728 0.95519 0.83989 1.19059 0.92587 0.94821 0.91109 1.20371 1.15562 0.99248 1.18158 0.92292 1.24971 0.96504 0.96502 0.95082 1.70000 1.43444 1.03412 1.34232 0.86601 0.81989 0.78307 0.81474 1.19794 1.20987 1.21027 1.23017 1.00341 0.91804 1.09732 1.22470 1.00999 0.97578 0.97050 0.91887 0.91864 0.92080 0.85889 0.85981 0.86247 0.86230 0.86155 0.88471 0.87828 0.77030 0.77165 0.91204 0.94823 0.92953 0.91698 0.90451 0.89607 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.84 37.16 0.37 -0.56 16 2 C -0.11 -1.11 2.17 -155.66 -0.34 -1.45 16 3 C -0.05 -0.49 4.27 -104.62 -0.45 -0.94 16 4 C -0.11 -1.15 8.28 -39.59 -0.33 -1.47 16 5 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 6 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 7 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 8 C -0.11 -1.07 9.54 -39.58 -0.38 -1.44 16 9 C -0.18 -1.90 9.62 -26.74 -0.26 -2.16 16 10 C 0.13 1.66 6.07 -67.93 -0.41 1.25 16 11 H 0.14 1.99 7.39 -51.93 -0.38 1.61 16 12 N -0.72 -10.69 4.84 -58.68 -0.28 -10.97 16 13 C 0.70 13.56 8.57 -86.92 -0.74 12.82 16 14 O -0.60 -13.86 15.90 5.28 0.08 -13.78 16 15 N -0.72 -14.15 5.46 -65.22 -0.36 -14.51 16 16 C 0.18 4.18 5.50 -4.04 -0.02 4.16 16 17 C 0.03 0.59 1.42 -155.66 -0.22 0.37 16 18 C -0.50 -12.83 8.71 -34.44 -0.30 -13.13 16 19 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 20 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 21 N -0.87 -24.45 12.72 55.43 0.71 -23.74 16 22 Si 0.89 20.81 29.54 -169.99 -5.02 15.78 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.21 -4.38 9.96 -26.70 -0.27 -4.65 16 27 C -0.14 -3.27 9.23 -26.70 -0.25 -3.52 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.48 7.90 -51.92 -0.41 0.07 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.12 1.43 8.05 -52.49 -0.42 1.00 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 0.92 8.05 -51.93 -0.42 0.51 16 38 H 0.40 5.28 7.36 -40.82 -0.30 4.98 16 39 H 0.40 7.12 8.46 -40.82 -0.35 6.77 16 40 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 42 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.58 8.14 -51.92 -0.42 1.15 16 45 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 46 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -30.07 387.27 -11.24 -41.31 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -7.32 Total: 13.55 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -4.88 Total: -13.47 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.07 Total: -49.22 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.08 Total: -13.78 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.07 -11.24 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.351 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds