Wall clock time and date at job start Tue Mar 31 2020 11:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 115.54650 * 2 1 4 4 C 1.38233 * 120.00471 * 271.46931 * 3 2 1 5 5 C 1.38231 * 120.00320 * 180.25353 * 4 3 2 6 6 C 1.38242 * 119.99784 * 359.51792 * 5 4 3 7 7 C 1.38224 * 120.00060 * 0.26841 * 6 5 4 8 8 C 1.38232 * 119.99821 * 91.25800 * 3 2 1 9 9 C 1.52993 * 117.50476 * 145.67366 * 2 1 3 10 10 C 1.52997 * 60.00466 * 107.51465 * 9 2 1 11 11 H 1.08995 * 117.49589 * 252.51815 * 10 9 2 12 12 N 1.46490 * 117.49858 * 107.48983 * 10 9 2 13 13 C 1.34776 * 120.00370 * 137.48829 * 12 10 9 14 14 O 1.21595 * 119.99310 * 359.97438 * 13 12 10 15 15 N 1.34772 * 120.00540 * 179.97438 * 13 12 10 16 16 C 1.46502 * 120.00092 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47258 * 184.43130 * 16 15 13 18 18 C 1.50702 * 115.54874 * 65.08547 * 17 16 15 19 19 H 1.07995 * 120.00351 * 264.70228 * 18 17 16 20 20 C 1.37880 * 119.99569 * 84.70135 * 18 17 16 21 21 N 1.31517 * 120.00071 * 1.89729 * 20 18 17 22 22 Si 1.86797 * 119.99835 * 181.90268 * 20 18 17 23 23 H 1.48503 * 109.47330 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47413 * 119.99806 * 22 20 18 25 25 H 1.48497 * 109.47233 * 239.99999 * 22 20 18 26 26 C 1.52996 * 117.49806 * 279.42042 * 17 16 15 27 27 C 1.52999 * 117.50199 * 210.76210 * 17 16 15 28 28 H 1.09001 * 109.47361 * 85.58585 * 1 2 3 29 29 H 1.09012 * 109.46535 * 205.57938 * 1 2 3 30 30 H 1.09000 * 109.47463 * 325.57289 * 1 2 3 31 31 H 1.08001 * 119.99639 * 0.04002 * 4 3 2 32 32 H 1.07998 * 120.00345 * 179.78041 * 5 4 3 33 33 H 1.07995 * 119.99804 * 180.25392 * 6 5 4 34 34 H 1.08004 * 120.00263 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.00304 * 359.97438 * 8 3 2 36 36 H 1.09005 * 117.50355 * 215.00646 * 9 2 1 37 37 H 1.09005 * 117.49916 * 359.97438 * 9 2 1 38 38 H 0.97003 * 120.00553 * 317.48021 * 12 10 9 39 39 H 0.97000 * 119.99801 * 359.97438 * 15 13 12 40 40 H 1.09000 * 109.47151 * 304.43501 * 16 15 13 41 41 H 1.09000 * 109.47147 * 64.43198 * 16 15 13 42 42 H 0.96998 * 119.99539 * 185.01245 * 21 20 18 43 43 H 1.09004 * 117.50164 * 0.02562 * 26 17 16 44 44 H 1.09007 * 117.49819 * 145.01709 * 26 17 16 45 45 H 1.08996 * 117.49895 * 214.98022 * 27 17 16 46 46 H 1.09006 * 117.49391 * 359.97391 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 6 2.4503 1.9966 -1.1967 5 6 3.0512 3.2415 -1.1968 6 6 3.3726 3.8539 0.0002 7 6 3.0982 3.2190 1.1969 8 6 2.5016 1.9719 1.1969 9 6 2.2365 -1.1207 0.7652 10 6 2.2370 -1.1209 -0.7647 11 1 1.6120 -1.8585 -1.2681 12 7 3.4938 -0.7902 -1.4408 13 6 3.8889 -1.5020 -2.5149 14 8 3.2022 -2.4190 -2.9225 15 7 5.0449 -1.1975 -3.1372 16 6 5.4745 -1.9716 -4.3044 17 6 6.8595 -1.4977 -4.7492 18 6 7.9769 -1.7444 -3.7684 19 1 8.2743 -0.9659 -3.0816 20 6 8.6193 -2.9642 -3.7481 21 7 8.2824 -3.8994 -4.6092 22 14 9.9681 -3.2886 -2.4972 23 1 10.1564 -2.0845 -1.6487 24 1 9.5846 -4.4414 -1.6432 25 1 11.2362 -3.5976 -3.2054 26 6 6.9324 -0.2268 -5.5980 27 6 7.1938 -1.5919 -6.2392 28 1 -0.3634 0.0791 -1.0246 29 1 -0.3633 -0.9271 0.4438 30 1 -0.3634 0.8476 0.5810 31 1 2.1952 1.5200 -2.1317 32 1 3.2657 3.7375 -2.1318 33 1 3.8383 4.8283 0.0002 34 1 3.3497 3.6972 2.1321 35 1 2.2869 1.4760 2.1320 36 1 3.1714 -0.8746 1.2688 37 1 1.6114 -1.8579 1.2691 38 1 4.0418 -0.0588 -1.1155 39 1 5.5924 -0.4657 -2.8123 40 1 5.5188 -3.0289 -4.0429 41 1 4.7629 -1.8281 -5.1176 42 1 8.6822 -4.7811 -4.5488 43 1 5.9937 0.2719 -5.8392 44 1 7.7888 0.4306 -5.4473 45 1 8.2218 -1.8321 -6.5102 46 1 6.4269 -1.9920 -6.9027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619529742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:00 Heat of formation + Delta-G solvation = 23.233514 kcal Electronic energy + Delta-G solvation = -25878.576260 eV Core-core repulsion = 22347.694161 eV Total energy + Delta-G solvation = -3530.882099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38243 -40.32817 -38.67774 -38.08226 -35.00479 -34.13643 -33.87423 -31.73358 -31.38116 -29.20366 -27.98812 -26.96043 -24.01452 -23.75691 -22.99794 -22.66431 -21.72987 -21.22185 -20.46137 -19.27291 -18.22284 -17.75968 -17.05485 -16.67584 -16.33003 -16.07765 -15.83171 -15.74952 -15.27891 -15.19376 -14.83910 -14.39489 -14.27471 -14.18633 -13.92907 -13.68602 -13.63920 -13.39457 -13.02650 -12.90173 -12.86685 -12.75238 -12.35467 -12.23822 -12.02043 -11.98210 -11.72764 -11.47154 -11.27707 -10.95948 -10.90620 -10.41954 -10.13941 -9.96925 -9.78362 -9.66155 -9.35029 -8.09740 -6.22458 0.46223 0.53481 1.40036 1.43446 1.52381 1.74609 2.13185 2.42520 2.85202 2.90376 3.19140 3.27019 3.59345 3.62524 3.78569 3.90651 4.16014 4.21352 4.23380 4.26079 4.34287 4.56663 4.62739 4.66783 4.70804 4.73216 4.73522 4.87328 4.93480 4.95462 4.97376 5.01527 5.06694 5.19283 5.20605 5.29807 5.33017 5.56135 5.59817 5.62975 5.66261 5.68006 5.72997 5.74227 5.78866 6.10482 6.15599 6.37396 6.84747 7.18771 7.46937 7.66393 8.98329 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.003440 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.911489 B = 8138.321455 C = 8360.914675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.087 4.087 3 C -0.058 4.058 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.127 4.127 7 C -0.124 4.124 8 C -0.115 4.115 9 C -0.166 4.166 10 C 0.092 3.908 11 H 0.121 0.879 12 N -0.702 5.702 13 C 0.700 3.300 14 O -0.643 6.643 15 N -0.714 5.714 16 C 0.201 3.799 17 C 0.002 3.998 18 C -0.499 4.499 19 H 0.061 0.939 20 C 0.024 3.976 21 N -0.907 5.907 22 Si 0.947 3.053 23 H -0.262 1.262 24 H -0.289 1.289 25 H -0.284 1.284 26 C -0.176 4.176 27 C -0.154 4.154 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.405 0.595 39 H 0.405 0.595 40 H 0.025 0.975 41 H 0.034 0.966 42 H 0.258 0.742 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 15.013 12.817 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.059 4.059 4 C -0.139 4.139 5 C -0.146 4.146 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.133 4.133 9 C -0.205 4.205 10 C -0.015 4.015 11 H 0.138 0.862 12 N -0.355 5.355 13 C 0.400 3.600 14 O -0.526 6.526 15 N -0.367 5.367 16 C 0.076 3.924 17 C 0.002 3.998 18 C -0.537 4.537 19 H 0.079 0.921 20 C -0.176 4.176 21 N -0.545 5.545 22 Si 0.773 3.227 23 H -0.186 1.186 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.213 4.213 27 C -0.192 4.192 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.241 0.759 39 H 0.240 0.760 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.531 14.014 12.310 23.044 hybrid contribution 1.393 -0.211 0.407 1.467 sum -12.138 13.803 12.716 22.350 Atomic orbital electron populations 1.21331 0.89524 1.03269 1.02319 1.20778 0.95721 0.87951 1.04379 1.19066 0.99161 0.94134 0.93503 1.21060 0.99614 0.95614 0.97568 1.21364 0.98836 0.95181 0.99172 1.21451 0.99839 1.00791 0.92361 1.21441 0.98597 0.95143 0.98991 1.21197 0.98777 0.95606 0.97707 1.23817 1.02785 1.00257 0.93595 1.21597 0.87060 1.00884 0.91938 0.86153 1.44304 1.24253 1.36676 1.30303 1.16102 0.81631 0.81869 0.80367 1.90834 1.57573 1.34574 1.69571 1.44896 1.21690 1.37494 1.32597 1.20407 0.93706 0.93365 0.84965 1.19068 0.92160 0.97531 0.91074 1.20672 1.15688 0.99078 1.18238 0.92066 1.25680 0.98590 0.96615 0.96763 1.70120 1.44895 1.03643 1.35870 0.85679 0.79429 0.78137 0.79420 1.18611 1.21526 1.20984 1.23001 1.01652 0.90535 1.06105 1.22395 0.99967 0.99905 0.96929 0.92439 0.90602 0.90996 0.87388 0.85176 0.84318 0.84002 0.84707 0.88208 0.85984 0.75938 0.76024 0.95660 0.94739 0.93310 0.89215 0.89659 0.91762 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.84 71.98 0.71 -0.96 16 2 C -0.09 -1.64 2.17 -52.93 -0.12 -1.75 16 3 C -0.06 -1.12 4.27 -19.87 -0.08 -1.21 16 4 C -0.12 -2.50 8.28 22.27 0.18 -2.32 16 5 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 6 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 7 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 8 C -0.11 -1.90 9.54 22.27 0.21 -1.68 16 9 C -0.17 -3.13 9.62 30.59 0.29 -2.84 16 10 C 0.09 2.35 6.07 44.99 0.27 2.62 16 11 H 0.12 3.55 7.39 -2.39 -0.02 3.53 16 12 N -0.70 -20.70 4.84 -457.83 -2.21 -22.91 16 13 C 0.70 27.53 8.57 179.06 1.53 29.06 16 14 O -0.64 -30.67 15.90 -4.02 -0.06 -30.73 16 15 N -0.71 -28.28 5.46 -478.53 -2.61 -30.90 16 16 C 0.20 9.37 5.50 86.38 0.48 9.85 16 17 C 0.00 0.12 1.42 -52.93 -0.07 0.04 16 18 C -0.50 -25.73 8.71 25.60 0.22 -25.51 16 19 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 20 C 0.02 1.29 5.43 84.65 0.46 1.75 16 21 N -0.91 -51.93 12.72 21.45 0.27 -51.65 16 22 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 C -0.18 -6.98 9.96 30.62 0.30 -6.68 16 27 C -0.15 -7.06 9.23 30.62 0.28 -6.78 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.99 7.90 -2.38 -0.02 0.97 16 30 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.11 2.52 8.05 -2.91 -0.02 2.50 16 32 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 33 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.12 1.86 8.05 -2.38 -0.02 1.84 16 38 H 0.40 10.48 7.36 -92.71 -0.68 9.79 16 39 H 0.40 14.30 8.46 -92.71 -0.78 13.52 16 40 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.03 1.58 8.09 -2.39 -0.02 1.56 16 42 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 43 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 45 H 0.06 3.20 8.14 -2.39 -0.02 3.19 16 46 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 Total: -1.00 -65.78 387.27 2.27 -63.51 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.49 Total: 39.77 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.35 Total: -11.95 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -4.56 Total: -105.46 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.06 Total: -30.73 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.78 2.27 -63.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.743 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds