Wall clock time and date at job start Tue Mar 31 2020 11:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 110.85681 * 2 1 4 4 C 1.38226 * 120.00017 * 355.56614 * 3 2 1 5 5 C 1.38238 * 120.00059 * 179.74859 * 4 3 2 6 6 C 1.38237 * 119.99816 * 0.53261 * 5 4 3 7 7 C 1.38239 * 119.99812 * 359.74185 * 6 5 4 8 8 C 1.38235 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.54625 * 110.97371 * 236.20197 * 2 1 3 10 10 C 1.51283 * 104.19457 * 266.68393 * 9 2 1 11 11 O 1.21286 * 124.93886 * 163.72086 * 10 9 2 12 12 N 1.34410 * 110.11759 * 343.74230 * 10 9 2 13 13 C 1.46498 * 124.34726 * 179.59021 * 12 10 9 14 14 N 1.46504 * 109.47022 * 90.03092 * 13 12 10 15 15 C 1.36936 * 120.00013 * 89.99558 * 14 13 12 16 16 H 1.08002 * 120.00360 * 217.83410 * 15 14 13 17 17 C 1.38814 * 119.99885 * 38.11499 * 15 14 13 18 18 N 1.31611 * 120.00469 * 20.33614 * 17 15 14 19 19 Si 1.86804 * 119.99846 * 200.34117 * 17 15 14 20 20 H 1.48503 * 109.47068 * 59.99545 * 19 17 15 21 21 H 1.48498 * 109.47257 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47155 * 299.99732 * 19 17 15 23 23 C 1.46501 * 120.00148 * 269.99828 * 14 13 12 24 24 C 1.52995 * 117.50221 * 194.23587 * 23 14 13 25 25 C 1.52994 * 117.49753 * 125.61203 * 23 14 13 26 26 C 1.46767 * 111.30320 * 359.86327 * 12 10 9 27 27 H 1.08998 * 109.47619 * 182.33842 * 1 2 3 28 28 H 1.09002 * 109.47410 * 302.34305 * 1 2 3 29 29 H 1.09002 * 109.46966 * 62.33903 * 1 2 3 30 30 H 1.08004 * 120.00294 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.00160 * 180.29472 * 5 4 3 32 32 H 1.07998 * 120.00241 * 179.77480 * 6 5 4 33 33 H 1.08000 * 120.00085 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.00015 * 179.97438 * 8 7 6 35 35 H 1.08995 * 110.48856 * 147.99882 * 9 2 1 36 36 H 1.09002 * 110.59250 * 25.41439 * 9 2 1 37 37 H 1.08996 * 109.47590 * 330.03077 * 13 12 10 38 38 H 1.09006 * 109.47528 * 210.02639 * 13 12 10 39 39 H 0.96995 * 120.00894 * 184.95391 * 18 17 15 40 40 H 1.09004 * 115.54246 * 339.94924 * 23 14 13 41 41 H 1.09000 * 117.49615 * 0.02562 * 24 23 14 42 42 H 1.08997 * 117.49769 * 145.02086 * 24 23 14 43 43 H 1.09002 * 117.50017 * 214.98195 * 25 23 14 44 44 H 1.09002 * 117.50276 * 0.02562 * 25 23 14 45 45 H 1.09000 * 110.24624 * 135.74995 * 26 12 10 46 46 H 1.08999 * 110.24143 * 257.75053 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 6 1.1973 2.4790 -0.0925 5 6 1.6891 3.7710 -0.0873 6 6 3.0509 3.9918 -0.0006 7 6 3.9206 2.9207 0.0862 8 6 3.4284 1.6290 0.0869 9 6 2.0834 -0.8031 -1.1998 10 6 2.2954 -2.1957 -0.6479 11 8 2.4515 -3.1930 -1.3203 12 7 2.2852 -2.1669 0.6958 13 6 2.4542 -3.3457 1.5491 14 7 3.8771 -3.5378 1.8402 15 6 4.4371 -2.9448 2.9402 16 1 5.4387 -2.5445 2.8868 17 6 3.7194 -2.8635 4.1257 18 7 2.7032 -3.6727 4.3367 19 14 4.1959 -1.6051 5.4215 20 1 4.0948 -0.2397 4.8463 21 1 3.2799 -1.7209 6.5845 22 1 5.5916 -1.8539 5.8634 23 6 4.7010 -4.3643 0.9545 24 6 6.0727 -4.8029 1.4711 25 6 5.9717 -3.7346 0.3806 26 6 2.0765 -0.8039 1.1984 27 1 -0.3634 -1.0268 0.0419 28 1 -0.3634 0.5498 0.8682 29 1 -0.3633 0.4771 -0.9102 30 1 0.1336 2.3065 -0.1644 31 1 1.0096 4.6077 -0.1548 32 1 3.4355 5.0010 -0.0002 33 1 4.9846 3.0932 0.1544 34 1 4.1078 0.7922 0.1543 35 1 3.0285 -0.3793 -1.5393 36 1 1.3601 -0.8219 -2.0150 37 1 2.0667 -4.2252 1.0348 38 1 1.9090 -3.2005 2.4817 39 1 2.1574 -3.5690 5.1318 40 1 4.1547 -5.0626 0.3205 41 1 6.3620 -4.4769 2.4702 42 1 6.4291 -5.7901 1.1772 43 1 6.2618 -4.0190 -0.6309 44 1 6.1951 -2.7055 0.6622 45 1 1.3519 -0.8090 2.0127 46 1 3.0212 -0.3776 1.5357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777527278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:29 Heat of formation + Delta-G solvation = 41.826025 kcal Electronic energy + Delta-G solvation = -27269.781647 eV Core-core repulsion = 23739.705780 eV Total energy + Delta-G solvation = -3530.075867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.53031 -38.75223 -36.92435 -36.10765 -34.05228 -32.70766 -31.05803 -30.51886 -29.39464 -28.07305 -26.46644 -25.08938 -23.41454 -22.66158 -22.14438 -21.33840 -19.92907 -19.47396 -18.92739 -17.19697 -16.74676 -15.76506 -15.45642 -15.41931 -14.76173 -14.70495 -14.45717 -14.36945 -13.82774 -13.77006 -13.62093 -13.27216 -13.20771 -12.66824 -12.54440 -12.42557 -11.97125 -11.76585 -11.69019 -11.33227 -11.30353 -11.03945 -10.94851 -10.86856 -10.70872 -10.60936 -10.55591 -10.53498 -10.12444 -9.70041 -9.34593 -9.17115 -8.89090 -8.60468 -8.54893 -7.94573 -6.75192 -5.98648 -3.59983 1.35464 1.42620 3.23991 3.29066 3.32600 3.34814 3.74558 3.97127 4.33540 4.53337 4.73133 4.78025 4.95936 4.99150 5.05124 5.11544 5.18240 5.22240 5.27790 5.31114 5.50039 5.61686 5.69648 5.86178 5.87332 5.95683 5.97305 6.04570 6.07624 6.09113 6.14299 6.20626 6.24362 6.35642 6.45510 6.51703 6.52104 6.53999 6.66083 6.68759 6.99442 7.00680 7.02120 7.17344 7.53767 7.65781 8.00084 8.35013 8.95973 8.98609 9.59154 10.18218 11.00873 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.005393 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.116206 B = 5191.020608 C = 6056.637904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 C -0.059 4.059 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.127 4.127 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.144 4.144 10 C 0.512 3.488 11 O -0.550 6.550 12 N -0.605 5.605 13 C 0.360 3.640 14 N -0.541 5.541 15 C -0.261 4.261 16 H 0.062 0.938 17 C 0.019 3.981 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.128 3.872 24 C -0.194 4.194 25 C -0.220 4.220 26 C 0.121 3.879 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.259 0.741 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 12.427 -7.505 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.040 4.040 3 C -0.060 4.060 4 C -0.135 4.135 5 C -0.141 4.141 6 C -0.145 4.145 7 C -0.135 4.135 8 C -0.128 4.128 9 C -0.184 4.184 10 C 0.298 3.702 11 O -0.429 6.429 12 N -0.342 5.342 13 C 0.153 3.847 14 N -0.258 5.258 15 C -0.390 4.390 16 H 0.080 0.920 17 C -0.182 4.182 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.205 1.205 23 C 0.019 3.981 24 C -0.233 4.233 25 C -0.261 4.261 26 C -0.004 4.004 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.718 11.701 -7.530 14.403 hybrid contribution 0.487 0.875 0.790 1.275 sum -3.231 12.577 -6.740 14.630 Atomic orbital electron populations 1.21862 0.92913 1.02647 1.01936 1.20422 0.96149 0.91325 0.96110 1.19603 0.93370 0.93777 0.99221 1.21132 0.99848 0.92044 1.00463 1.21101 0.95443 0.96752 1.00788 1.21118 0.93652 0.98749 1.01008 1.21134 0.99738 0.92608 1.00053 1.21137 0.95127 0.97292 0.99233 1.22562 1.03123 0.94819 0.97939 1.20708 0.76104 0.89846 0.83498 1.90643 1.51775 1.37294 1.63185 1.50150 1.68464 1.09252 1.06306 1.21245 0.86019 0.83706 0.93684 1.43946 1.05938 1.51552 1.24334 1.18943 1.01347 1.31284 0.87435 0.92018 1.25171 0.99040 0.97607 0.96350 1.69991 1.20477 1.34239 1.27992 0.86487 0.78287 0.81838 0.80984 1.20557 1.21377 1.20498 1.21191 0.85846 0.95316 0.95711 1.23071 1.03787 0.97364 0.99085 1.23247 1.08511 0.97919 0.96402 1.22075 1.00918 0.82640 0.94765 0.91772 0.91778 0.92100 0.85658 0.86361 0.86470 0.86172 0.85645 0.88518 0.88902 0.92546 0.86455 0.93118 0.89059 0.88383 0.90759 0.90938 0.90038 0.90797 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.10 37.16 0.26 -1.29 16 2 C -0.04 -0.53 0.86 -154.12 -0.13 -0.66 16 3 C -0.06 -0.76 4.94 -104.63 -0.52 -1.28 16 4 C -0.12 -1.30 9.06 -39.59 -0.36 -1.66 16 5 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 7 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 8 C -0.11 -1.46 8.07 -39.58 -0.32 -1.78 16 9 C -0.14 -2.13 5.89 -26.74 -0.16 -2.29 16 10 C 0.51 9.95 8.02 -10.86 -0.09 9.86 16 11 O -0.55 -12.57 17.59 5.55 0.10 -12.47 16 12 N -0.60 -11.92 3.17 -176.23 -0.56 -12.48 16 13 C 0.36 8.23 6.12 -63.75 -0.39 7.83 16 14 N -0.54 -13.08 3.02 -169.35 -0.51 -13.59 16 15 C -0.26 -6.65 8.04 -15.06 -0.12 -6.77 16 16 H 0.06 1.62 7.21 -52.49 -0.38 1.24 16 17 C 0.02 0.49 4.98 -17.43 -0.09 0.40 16 18 N -0.89 -23.60 11.44 55.49 0.63 -22.96 16 19 Si 0.90 20.30 29.60 -169.99 -5.03 15.26 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.13 2.90 6.62 -67.94 -0.45 2.45 16 24 C -0.19 -4.04 9.81 -26.74 -0.26 -4.30 16 25 C -0.22 -4.53 10.08 -26.74 -0.27 -4.80 16 26 C 0.12 2.05 6.36 -3.21 -0.02 2.03 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 29 H 0.06 0.59 7.55 -51.93 -0.39 0.19 16 30 H 0.13 1.17 6.06 -52.48 -0.32 0.86 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.77 7.34 -52.49 -0.39 1.39 16 35 H 0.10 1.40 7.20 -51.93 -0.37 1.03 16 36 H 0.09 1.24 7.92 -51.93 -0.41 0.82 16 37 H 0.06 1.33 7.83 -51.93 -0.41 0.92 16 38 H 0.12 2.88 5.51 -51.93 -0.29 2.60 16 39 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 40 H 0.09 2.08 8.10 -51.93 -0.42 1.66 16 41 H 0.10 2.20 6.96 -51.93 -0.36 1.84 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.08 1.75 7.98 -51.93 -0.41 1.33 16 45 H 0.07 1.25 7.90 -51.93 -0.41 0.84 16 46 H 0.07 1.34 6.61 -51.93 -0.34 1.00 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -28.77 370.99 -10.85 -39.62 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.97 Total: 8.45 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -4.10 Total: -7.43 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.44 Total: -49.03 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.10 Total: -12.47 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.77 -10.85 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777527278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.450 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds