Wall clock time and date at job start Tue Mar 31 2020 11:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 110.85681 * 2 1 4 4 C 1.38226 * 120.00017 * 355.56614 * 3 2 1 5 5 C 1.38238 * 120.00059 * 179.74859 * 4 3 2 6 6 C 1.38237 * 119.99816 * 0.53261 * 5 4 3 7 7 C 1.38239 * 119.99812 * 359.74185 * 6 5 4 8 8 C 1.38235 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.54625 * 110.97371 * 236.20197 * 2 1 3 10 10 C 1.51283 * 104.19457 * 266.68393 * 9 2 1 11 11 O 1.21286 * 124.93886 * 163.72086 * 10 9 2 12 12 N 1.34410 * 110.11759 * 343.74230 * 10 9 2 13 13 C 1.46498 * 124.34726 * 179.59021 * 12 10 9 14 14 N 1.46504 * 109.47022 * 90.03092 * 13 12 10 15 15 C 1.36936 * 120.00013 * 89.99558 * 14 13 12 16 16 H 1.08002 * 120.00360 * 217.83410 * 15 14 13 17 17 C 1.38814 * 119.99885 * 38.11499 * 15 14 13 18 18 N 1.31611 * 120.00469 * 20.33614 * 17 15 14 19 19 Si 1.86804 * 119.99846 * 200.34117 * 17 15 14 20 20 H 1.48503 * 109.47068 * 59.99545 * 19 17 15 21 21 H 1.48498 * 109.47257 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47155 * 299.99732 * 19 17 15 23 23 C 1.46501 * 120.00148 * 269.99828 * 14 13 12 24 24 C 1.52995 * 117.50221 * 194.23587 * 23 14 13 25 25 C 1.52994 * 117.49753 * 125.61203 * 23 14 13 26 26 C 1.46767 * 111.30320 * 359.86327 * 12 10 9 27 27 H 1.08998 * 109.47619 * 182.33842 * 1 2 3 28 28 H 1.09002 * 109.47410 * 302.34305 * 1 2 3 29 29 H 1.09002 * 109.46966 * 62.33903 * 1 2 3 30 30 H 1.08004 * 120.00294 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.00160 * 180.29472 * 5 4 3 32 32 H 1.07998 * 120.00241 * 179.77480 * 6 5 4 33 33 H 1.08000 * 120.00085 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.00015 * 179.97438 * 8 7 6 35 35 H 1.08995 * 110.48856 * 147.99882 * 9 2 1 36 36 H 1.09002 * 110.59250 * 25.41439 * 9 2 1 37 37 H 1.08996 * 109.47590 * 330.03077 * 13 12 10 38 38 H 1.09006 * 109.47528 * 210.02639 * 13 12 10 39 39 H 0.96995 * 120.00894 * 184.95391 * 18 17 15 40 40 H 1.09004 * 115.54246 * 339.94924 * 23 14 13 41 41 H 1.09000 * 117.49615 * 0.02562 * 24 23 14 42 42 H 1.08997 * 117.49769 * 145.02086 * 24 23 14 43 43 H 1.09002 * 117.50017 * 214.98195 * 25 23 14 44 44 H 1.09002 * 117.50276 * 0.02562 * 25 23 14 45 45 H 1.09000 * 110.24624 * 135.74995 * 26 12 10 46 46 H 1.08999 * 110.24143 * 257.75053 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 6 1.1973 2.4790 -0.0925 5 6 1.6891 3.7710 -0.0873 6 6 3.0509 3.9918 -0.0006 7 6 3.9206 2.9207 0.0862 8 6 3.4284 1.6290 0.0869 9 6 2.0834 -0.8031 -1.1998 10 6 2.2954 -2.1957 -0.6479 11 8 2.4515 -3.1930 -1.3203 12 7 2.2852 -2.1669 0.6958 13 6 2.4542 -3.3457 1.5491 14 7 3.8771 -3.5378 1.8402 15 6 4.4371 -2.9448 2.9402 16 1 5.4387 -2.5445 2.8868 17 6 3.7194 -2.8635 4.1257 18 7 2.7032 -3.6727 4.3367 19 14 4.1959 -1.6051 5.4215 20 1 4.0948 -0.2397 4.8463 21 1 3.2799 -1.7209 6.5845 22 1 5.5916 -1.8539 5.8634 23 6 4.7010 -4.3643 0.9545 24 6 6.0727 -4.8029 1.4711 25 6 5.9717 -3.7346 0.3806 26 6 2.0765 -0.8039 1.1984 27 1 -0.3634 -1.0268 0.0419 28 1 -0.3634 0.5498 0.8682 29 1 -0.3633 0.4771 -0.9102 30 1 0.1336 2.3065 -0.1644 31 1 1.0096 4.6077 -0.1548 32 1 3.4355 5.0010 -0.0002 33 1 4.9846 3.0932 0.1544 34 1 4.1078 0.7922 0.1543 35 1 3.0285 -0.3793 -1.5393 36 1 1.3601 -0.8219 -2.0150 37 1 2.0667 -4.2252 1.0348 38 1 1.9090 -3.2005 2.4817 39 1 2.1574 -3.5690 5.1318 40 1 4.1547 -5.0626 0.3205 41 1 6.3620 -4.4769 2.4702 42 1 6.4291 -5.7901 1.1772 43 1 6.2618 -4.0190 -0.6309 44 1 6.1951 -2.7055 0.6622 45 1 1.3519 -0.8090 2.0127 46 1 3.0212 -0.3776 1.5357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777527278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:28 Heat of formation + Delta-G solvation = 28.847164 kcal Electronic energy + Delta-G solvation = -27270.344452 eV Core-core repulsion = 23739.705780 eV Total energy + Delta-G solvation = -3530.638673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81652 -39.90939 -38.70107 -37.52157 -35.71075 -34.34968 -32.30747 -31.82546 -30.58349 -29.26557 -27.99314 -26.71180 -25.12215 -23.72628 -23.05218 -23.04866 -21.77684 -20.63469 -20.44684 -18.59183 -18.21111 -17.48099 -16.96369 -16.79726 -16.35386 -16.05458 -15.76914 -15.57777 -15.49682 -15.04961 -14.83291 -14.59271 -14.33812 -14.09234 -13.83966 -13.63983 -13.54674 -13.24824 -12.93683 -12.81930 -12.70239 -12.61008 -12.45960 -12.35548 -12.28390 -12.06776 -11.96594 -11.78910 -11.59490 -11.50396 -11.08689 -10.75679 -10.48807 -9.75782 -9.59321 -9.54527 -8.67610 -7.94152 -5.60621 0.46553 0.56597 1.42390 1.45788 1.52077 1.71640 2.32029 2.46641 2.88987 3.09077 3.36442 3.41462 3.44728 3.63454 3.68319 3.97436 4.02549 4.19871 4.22052 4.23688 4.35907 4.40309 4.45232 4.52782 4.62142 4.65704 4.69859 4.74551 4.77343 4.83304 4.90108 4.95488 4.97739 5.03676 5.14390 5.17640 5.22156 5.23349 5.30959 5.44088 5.59862 5.66034 5.68957 5.75744 5.85707 6.17666 6.28389 6.52336 7.02172 7.35273 7.65953 8.23998 9.02585 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.005393 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.116206 B = 5191.020608 C = 6056.637904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.022 4.022 3 C -0.073 4.073 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.131 4.131 10 C 0.504 3.496 11 O -0.589 6.589 12 N -0.609 5.609 13 C 0.370 3.630 14 N -0.554 5.554 15 C -0.263 4.263 16 H 0.051 0.949 17 C -0.017 4.017 18 N -0.911 5.911 19 Si 0.951 3.049 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.280 1.280 23 C 0.101 3.899 24 C -0.181 4.181 25 C -0.202 4.202 26 C 0.120 3.880 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.258 0.742 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 15.235 -8.265 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 C -0.073 4.073 4 C -0.133 4.133 5 C -0.140 4.140 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.171 4.171 10 C 0.292 3.708 11 O -0.471 6.471 12 N -0.344 5.344 13 C 0.163 3.837 14 N -0.273 5.273 15 C -0.392 4.392 16 H 0.069 0.931 17 C -0.216 4.216 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.205 1.205 23 C -0.008 4.008 24 C -0.220 4.220 25 C -0.242 4.242 26 C -0.004 4.004 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.058 0.942 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.311 14.541 -8.302 17.290 hybrid contribution 0.704 0.011 0.996 1.220 sum -3.607 14.552 -7.306 16.677 Atomic orbital electron populations 1.21884 0.90829 1.02436 1.03969 1.20314 0.97566 0.91273 0.93069 1.19525 0.93400 0.93526 1.00897 1.21390 1.00663 0.91814 0.99470 1.21494 0.95829 0.97322 0.99329 1.21469 0.93834 0.99491 0.99615 1.21329 1.00717 0.92414 1.00235 1.21105 0.95373 0.97487 1.00881 1.22514 1.04163 0.91492 0.98956 1.21451 0.74961 0.91281 0.83081 1.90609 1.53399 1.39216 1.63867 1.49925 1.68248 1.09637 1.06588 1.20812 0.85503 0.84333 0.93033 1.44023 1.06289 1.52326 1.24628 1.18951 1.01076 1.31184 0.88035 0.93120 1.25745 0.99153 0.98930 0.97761 1.70092 1.21399 1.35412 1.28505 0.85615 0.77707 0.80033 0.78790 1.19956 1.21335 1.20550 1.21311 0.86573 0.96289 0.96586 1.23047 1.01970 0.98714 0.98265 1.23169 1.06404 0.97256 0.97379 1.22144 1.00194 0.81491 0.96530 0.93096 0.90468 0.89376 0.83490 0.83409 0.83987 0.85284 0.87832 0.88072 0.86572 0.94185 0.88193 0.93261 0.89670 0.90201 0.88041 0.88834 0.91229 0.91044 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 7.10 71.98 0.51 -2.22 16 2 C -0.02 -0.56 0.86 -51.93 -0.04 -0.60 16 3 C -0.07 -1.74 4.94 -19.87 -0.10 -1.84 16 4 C -0.12 -2.17 9.06 22.27 0.20 -1.97 16 5 C -0.12 -2.03 10.05 22.27 0.22 -1.80 16 6 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 7 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 8 C -0.13 -3.38 8.07 22.27 0.18 -3.20 16 9 C -0.13 -3.78 5.89 30.59 0.18 -3.60 16 10 C 0.50 19.97 8.02 87.90 0.71 20.67 16 11 O -0.59 -27.66 17.59 -3.05 -0.05 -27.71 16 12 N -0.61 -24.85 3.17 -830.06 -2.63 -27.48 16 13 C 0.37 17.79 6.12 170.96 1.05 18.84 16 14 N -0.55 -27.84 3.02 -689.69 -2.08 -29.92 16 15 C -0.26 -13.81 8.04 84.03 0.68 -13.13 16 16 H 0.05 2.74 7.21 -2.91 -0.02 2.72 16 17 C -0.02 -0.91 4.98 84.86 0.42 -0.49 16 18 N -0.91 -49.83 11.44 21.65 0.25 -49.59 16 19 Si 0.95 42.24 29.60 68.60 2.03 44.27 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.10 4.67 6.62 44.99 0.30 4.97 16 24 C -0.18 -7.53 9.81 30.59 0.30 -7.23 16 25 C -0.20 -8.30 10.08 30.59 0.31 -7.99 16 26 C 0.12 4.16 6.36 86.77 0.55 4.71 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.39 7.67 -2.39 -0.02 1.37 16 29 H 0.09 1.35 7.55 -2.39 -0.02 1.33 16 30 H 0.15 2.07 6.06 -2.91 -0.02 2.06 16 31 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.10 3.06 7.34 -2.91 -0.02 3.03 16 35 H 0.10 2.87 7.20 -2.39 -0.02 2.85 16 36 H 0.12 2.84 7.92 -2.39 -0.02 2.82 16 37 H 0.04 2.00 7.83 -2.39 -0.02 1.99 16 38 H 0.10 5.17 5.51 -2.38 -0.01 5.16 16 39 H 0.26 13.59 8.32 -92.71 -0.77 12.81 16 40 H 0.09 4.01 8.10 -2.38 -0.02 3.99 16 41 H 0.08 3.63 6.96 -2.39 -0.02 3.61 16 42 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 44 H 0.07 3.02 7.98 -2.39 -0.02 3.00 16 45 H 0.07 2.47 7.90 -2.39 -0.02 2.45 16 46 H 0.05 2.07 6.61 -2.39 -0.02 2.05 16 Total: -1.00 -63.86 370.99 4.38 -59.47 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.97 Total: 30.48 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.91 Total: 0.47 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.47 Total: -106.99 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -63.86 4.38 -59.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777527278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.322 kcal (2) G-P(sol) polarization free energy of solvation -63.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds