Wall clock time and date at job start Tue Mar 31 2020 11:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 110.43721 * 2 1 4 4 C 1.38234 * 120.00297 * 182.93216 * 3 2 1 5 5 C 1.38229 * 120.00239 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00022 * 359.97438 * 5 4 3 7 7 C 1.38239 * 119.99755 * 359.95823 * 6 5 4 8 8 C 1.38226 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.54632 * 110.60041 * 122.61856 * 2 1 3 10 10 C 1.54486 * 101.76592 * 93.93472 * 9 2 1 11 11 N 1.46763 * 105.47424 * 25.41591 * 10 9 2 12 12 C 1.46497 * 124.34919 * 163.00053 * 11 10 9 13 13 N 1.46497 * 109.47436 * 269.95443 * 12 11 10 14 14 C 1.36940 * 119.99997 * 269.99799 * 13 12 11 15 15 H 1.08001 * 119.99559 * 141.51251 * 14 13 12 16 16 C 1.38808 * 120.00008 * 321.52080 * 14 13 12 17 17 N 1.31614 * 120.00225 * 340.13299 * 16 14 13 18 18 Si 1.86805 * 120.00033 * 160.14174 * 16 14 13 19 19 H 1.48503 * 109.46826 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47378 * 119.99240 * 18 16 14 21 21 H 1.48499 * 109.46938 * 239.99878 * 18 16 14 22 22 C 1.46495 * 119.99892 * 90.00013 * 13 12 11 23 23 C 1.53005 * 117.49779 * 191.43361 * 22 13 12 24 24 C 1.52999 * 60.00025 * 252.50915 * 23 22 13 25 25 C 1.34419 * 111.29974 * 342.98502 * 11 10 9 26 26 O 1.21287 * 124.94049 * 180.44078 * 25 11 10 27 27 H 1.09000 * 109.47180 * 59.30337 * 1 2 3 28 28 H 1.09000 * 109.47013 * 179.30388 * 1 2 3 29 29 H 1.09002 * 109.47077 * 299.29787 * 1 2 3 30 30 H 1.07998 * 119.99804 * 0.24471 * 4 3 2 31 31 H 1.08006 * 120.00515 * 179.97438 * 5 4 3 32 32 H 1.08003 * 120.00677 * 179.97438 * 6 5 4 33 33 H 1.08000 * 119.99686 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.00761 * 179.97438 * 8 7 6 35 35 H 1.08997 * 110.96857 * 212.05131 * 9 2 1 36 36 H 1.08997 * 110.96584 * 335.82084 * 9 2 1 37 37 H 1.09001 * 110.24573 * 266.41947 * 10 9 2 38 38 H 1.09001 * 110.31822 * 144.45845 * 10 9 2 39 39 H 1.08999 * 109.46991 * 29.95560 * 12 11 10 40 40 H 1.09000 * 109.47004 * 149.95407 * 12 11 10 41 41 H 0.97001 * 120.00536 * 185.07964 * 17 16 14 42 42 H 1.09000 * 115.55532 * 337.14103 * 22 13 12 43 43 H 1.08993 * 117.49946 * 0.02562 * 23 22 13 44 44 H 1.09003 * 117.49499 * 145.02325 * 23 22 13 45 45 H 1.09002 * 117.50220 * 252.50884 * 24 23 22 46 46 H 1.09002 * 117.49815 * 107.49007 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 6 3.4178 1.6424 -0.0612 5 6 3.9005 2.9376 -0.0618 6 6 3.0214 4.0028 -0.0016 7 6 1.6597 3.7726 0.0582 8 6 1.1770 2.4773 0.0584 9 6 2.0741 -0.7802 1.2191 10 6 2.2820 -2.1904 0.6234 11 7 2.4783 -1.9823 -0.8160 12 6 3.0562 -2.9764 -1.7237 13 7 4.5092 -2.7986 -1.7818 14 6 5.0598 -1.9622 -2.7158 15 1 5.9061 -1.3439 -2.4549 16 6 4.5303 -1.9089 -3.9978 17 7 3.7859 -2.8983 -4.4440 18 14 4.8742 -0.4328 -5.0898 19 1 5.7305 0.5352 -4.3583 20 1 5.5730 -0.8802 -6.3213 21 1 3.5923 0.2203 -5.4575 22 6 5.3730 -3.5156 -0.8406 23 6 6.8420 -3.0938 -0.7680 24 6 6.4587 -4.4204 -1.4267 25 6 2.0595 -0.7624 -1.1946 26 8 2.0995 -0.3353 -2.3291 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5029 0.8962 30 1 4.1044 0.8103 -0.1131 31 1 4.9644 3.1176 -0.1092 32 1 3.3984 5.0149 -0.0016 33 1 0.9729 4.6047 0.1057 34 1 0.1132 2.2973 0.1056 35 1 3.0188 -0.3585 1.5622 36 1 1.3421 -0.8020 2.0265 37 1 1.4008 -2.8075 0.7986 38 1 3.1635 -2.6596 1.0604 39 1 2.8270 -3.9778 -1.3592 40 1 2.6342 -2.8471 -2.7204 41 1 3.4770 -2.8964 -5.3635 42 1 4.8952 -3.8374 0.0847 43 1 7.1655 -2.2826 -1.4201 44 1 7.3307 -3.1380 0.2054 45 1 6.6953 -5.3373 -0.8869 46 1 6.5301 -4.4823 -2.5127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780427052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:52 Heat of formation + Delta-G solvation = 50.221837 kcal Electronic energy + Delta-G solvation = -27659.223335 eV Core-core repulsion = 24129.511538 eV Total energy + Delta-G solvation = -3529.711797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.50181 -38.40819 -36.91559 -35.59784 -34.15921 -32.81345 -30.85978 -30.49207 -29.25840 -28.26579 -25.80266 -24.88302 -23.40779 -22.34971 -21.95405 -21.40173 -20.31624 -19.84573 -18.44028 -16.96904 -16.62568 -15.66897 -15.48576 -15.46077 -14.69972 -14.48909 -14.44052 -14.14386 -13.80493 -13.48796 -13.46407 -13.21847 -12.97115 -12.60546 -12.36661 -12.00916 -11.92548 -11.86727 -11.80868 -11.47693 -11.12808 -11.01536 -10.91023 -10.70168 -10.56901 -10.48793 -10.38675 -10.27645 -9.88881 -9.66816 -9.41723 -9.01962 -8.67634 -8.44216 -8.27624 -7.88093 -6.57953 -5.87277 -3.40991 1.56524 1.64235 3.37939 3.50632 3.55097 3.59520 3.89609 4.06369 4.53370 4.66057 4.81380 4.91103 4.94664 5.13636 5.18524 5.22282 5.28493 5.30809 5.36858 5.48577 5.62476 5.68988 5.71576 5.78924 5.82602 5.92355 5.93928 6.04869 6.09223 6.13735 6.17448 6.20069 6.26593 6.30361 6.32813 6.46233 6.58904 6.67536 6.74122 6.87092 6.99717 7.21138 7.22259 7.32633 7.57839 7.86173 8.13874 8.51682 9.12585 9.17576 9.76004 10.28147 11.19569 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.005861 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.489382 B = 4775.788497 C = 5446.112021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.050 4.050 4 C -0.100 4.100 5 C -0.118 4.118 6 C -0.128 4.128 7 C -0.125 4.125 8 C -0.117 4.117 9 C -0.119 4.119 10 C 0.099 3.901 11 N -0.618 5.618 12 C 0.359 3.641 13 N -0.538 5.538 14 C -0.270 4.270 15 H 0.060 0.940 16 C 0.042 3.958 17 N -0.888 5.888 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.281 1.281 22 C 0.117 3.883 23 C -0.201 4.201 24 C -0.214 4.214 25 C 0.529 3.471 26 O -0.507 6.507 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.127 0.873 41 H 0.258 0.742 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 5.320 13.724 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 C -0.051 4.051 4 C -0.118 4.118 5 C -0.136 4.136 6 C -0.146 4.146 7 C -0.143 4.143 8 C -0.135 4.135 9 C -0.156 4.156 10 C -0.026 4.026 11 N -0.357 5.357 12 C 0.153 3.847 13 N -0.255 5.255 14 C -0.399 4.399 15 H 0.078 0.922 16 C -0.160 4.160 17 N -0.529 5.529 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.207 1.207 22 C 0.008 3.992 23 C -0.239 4.239 24 C -0.254 4.254 25 C 0.312 3.688 26 O -0.381 6.381 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.144 0.856 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.290 5.453 12.842 14.921 hybrid contribution 0.437 0.685 -0.534 0.972 sum -4.853 6.138 12.309 14.585 Atomic orbital electron populations 1.21708 0.92106 1.02465 1.02330 1.20461 0.97068 0.92654 0.96655 1.19396 0.93397 0.93279 0.98993 1.21083 0.95118 0.97274 0.98292 1.21099 0.99654 0.92626 1.00185 1.21078 0.93596 0.98634 1.01309 1.21038 0.95441 0.96554 1.01263 1.21073 0.99564 0.92146 1.00742 1.22740 1.01864 0.94860 0.96185 1.21964 1.00704 0.96407 0.83510 1.50218 1.60643 1.16704 1.08138 1.21350 0.82114 0.86510 0.94739 1.43950 1.00216 1.47516 1.33823 1.18841 1.15665 1.15621 0.89803 0.92228 1.25069 0.97935 0.96389 0.96594 1.69772 1.37901 1.29743 1.15532 0.86230 0.77874 0.82961 0.79572 1.20284 1.22073 1.20725 1.21259 0.86516 0.97485 0.93900 1.23055 1.00605 0.99524 1.00763 1.23274 1.08876 0.92354 1.00943 1.20242 0.77620 0.82282 0.88611 1.90727 1.54978 1.70940 1.21418 0.91662 0.91946 0.91676 0.85877 0.86278 0.86556 0.86467 0.85880 0.90222 0.89932 0.92260 0.91240 0.93344 0.85634 0.93206 0.89586 0.88649 0.90968 0.91215 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 7.16 37.16 0.27 -1.40 16 2 C -0.06 -1.01 0.76 -155.67 -0.12 -1.13 16 3 C -0.05 -0.81 4.76 -104.63 -0.50 -1.31 16 4 C -0.10 -1.71 8.47 -39.59 -0.34 -2.04 16 5 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 6 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 7 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 8 C -0.12 -1.66 9.04 -39.58 -0.36 -2.02 16 9 C -0.12 -1.53 6.15 -25.09 -0.15 -1.69 16 10 C 0.10 1.42 7.35 -3.12 -0.02 1.40 16 11 N -0.62 -12.15 3.17 -176.12 -0.56 -12.70 16 12 C 0.36 8.21 6.12 -63.76 -0.39 7.82 16 13 N -0.54 -12.92 3.01 -169.35 -0.51 -13.43 16 14 C -0.27 -7.35 8.58 -15.06 -0.13 -7.48 16 15 H 0.06 1.67 6.45 -52.49 -0.34 1.33 16 16 C 0.04 1.19 4.99 -17.43 -0.09 1.10 16 17 N -0.89 -25.73 11.43 55.49 0.63 -25.10 16 18 Si 0.90 23.71 29.60 -169.99 -5.03 18.68 16 19 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 22 C 0.12 2.41 6.60 -67.93 -0.45 1.96 16 23 C -0.20 -3.88 9.84 -26.73 -0.26 -4.14 16 24 C -0.21 -4.24 10.22 -26.73 -0.27 -4.52 16 25 C 0.53 11.11 6.24 -10.86 -0.07 11.04 16 26 O -0.51 -13.32 17.42 5.55 0.10 -13.23 16 27 H 0.06 0.91 7.67 -51.93 -0.40 0.52 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.66 7.49 -51.93 -0.39 0.27 16 30 H 0.12 2.31 7.82 -52.49 -0.41 1.90 16 31 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.48 6.00 -52.49 -0.31 1.16 16 35 H 0.08 1.05 7.18 -51.93 -0.37 0.68 16 36 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.96 7.80 -51.93 -0.41 0.56 16 39 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 40 H 0.13 3.42 5.30 -51.93 -0.28 3.15 16 41 H 0.26 7.31 8.32 -40.82 -0.34 6.97 16 42 H 0.09 1.55 7.80 -51.93 -0.41 1.14 16 43 H 0.10 2.05 6.36 -51.93 -0.33 1.72 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -32.20 371.44 -10.83 -43.03 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.99 Total: 5.89 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -4.07 Total: -8.74 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.43 Total: -51.23 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.10 Total: -13.23 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.03 Total: 18.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.20 -10.83 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780427052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.256 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds