Wall clock time and date at job start Tue Mar 31 2020 11:16:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50694 * 110.43721 * 2 1
4 4 C 1.38234 * 120.00297 * 182.93216 * 3 2 1
5 5 C 1.38229 * 120.00239 * 179.97438 * 4 3 2
6 6 C 1.38236 * 120.00022 * 359.97438 * 5 4 3
7 7 C 1.38239 * 119.99755 * 359.95823 * 6 5 4
8 8 C 1.38226 * 120.00282 * 0.02562 * 7 6 5
9 9 C 1.54632 * 110.60041 * 122.61856 * 2 1 3
10 10 C 1.54486 * 101.76592 * 93.93472 * 9 2 1
11 11 N 1.46763 * 105.47424 * 25.41591 * 10 9 2
12 12 C 1.46497 * 124.34919 * 163.00053 * 11 10 9
13 13 N 1.46497 * 109.47436 * 269.95443 * 12 11 10
14 14 C 1.36940 * 119.99997 * 269.99799 * 13 12 11
15 15 H 1.08001 * 119.99559 * 141.51251 * 14 13 12
16 16 C 1.38808 * 120.00008 * 321.52080 * 14 13 12
17 17 N 1.31614 * 120.00225 * 340.13299 * 16 14 13
18 18 Si 1.86805 * 120.00033 * 160.14174 * 16 14 13
19 19 H 1.48503 * 109.46826 * 359.97438 * 18 16 14
20 20 H 1.48494 * 109.47378 * 119.99240 * 18 16 14
21 21 H 1.48499 * 109.46938 * 239.99878 * 18 16 14
22 22 C 1.46495 * 119.99892 * 90.00013 * 13 12 11
23 23 C 1.53005 * 117.49779 * 191.43361 * 22 13 12
24 24 C 1.52999 * 60.00025 * 252.50915 * 23 22 13
25 25 C 1.34419 * 111.29974 * 342.98502 * 11 10 9
26 26 O 1.21287 * 124.94049 * 180.44078 * 25 11 10
27 27 H 1.09000 * 109.47180 * 59.30337 * 1 2 3
28 28 H 1.09000 * 109.47013 * 179.30388 * 1 2 3
29 29 H 1.09002 * 109.47077 * 299.29787 * 1 2 3
30 30 H 1.07998 * 119.99804 * 0.24471 * 4 3 2
31 31 H 1.08006 * 120.00515 * 179.97438 * 5 4 3
32 32 H 1.08003 * 120.00677 * 179.97438 * 6 5 4
33 33 H 1.08000 * 119.99686 * 179.97438 * 7 6 5
34 34 H 1.07999 * 120.00761 * 179.97438 * 8 7 6
35 35 H 1.08997 * 110.96857 * 212.05131 * 9 2 1
36 36 H 1.08997 * 110.96584 * 335.82084 * 9 2 1
37 37 H 1.09001 * 110.24573 * 266.41947 * 10 9 2
38 38 H 1.09001 * 110.31822 * 144.45845 * 10 9 2
39 39 H 1.08999 * 109.46991 * 29.95560 * 12 11 10
40 40 H 1.09000 * 109.47004 * 149.95407 * 12 11 10
41 41 H 0.97001 * 120.00536 * 185.07964 * 17 16 14
42 42 H 1.09000 * 115.55532 * 337.14103 * 22 13 12
43 43 H 1.08993 * 117.49946 * 0.02562 * 23 22 13
44 44 H 1.09003 * 117.49499 * 145.02325 * 23 22 13
45 45 H 1.09002 * 117.50220 * 252.50884 * 24 23 22
46 46 H 1.09002 * 117.49815 * 107.49007 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0562 1.4121 0.0000
4 6 3.4178 1.6424 -0.0612
5 6 3.9005 2.9376 -0.0618
6 6 3.0214 4.0028 -0.0016
7 6 1.6597 3.7726 0.0582
8 6 1.1770 2.4773 0.0584
9 6 2.0741 -0.7802 1.2191
10 6 2.2820 -2.1904 0.6234
11 7 2.4783 -1.9823 -0.8160
12 6 3.0562 -2.9764 -1.7237
13 7 4.5092 -2.7986 -1.7818
14 6 5.0598 -1.9622 -2.7158
15 1 5.9061 -1.3439 -2.4549
16 6 4.5303 -1.9089 -3.9978
17 7 3.7859 -2.8983 -4.4440
18 14 4.8742 -0.4328 -5.0898
19 1 5.7305 0.5352 -4.3583
20 1 5.5730 -0.8802 -6.3213
21 1 3.5923 0.2203 -5.4575
22 6 5.3730 -3.5156 -0.8406
23 6 6.8420 -3.0938 -0.7680
24 6 6.4587 -4.4204 -1.4267
25 6 2.0595 -0.7624 -1.1946
26 8 2.0995 -0.3353 -2.3291
27 1 -0.3633 0.5246 -0.8837
28 1 -0.3633 -1.0276 -0.0125
29 1 -0.3633 0.5029 0.8962
30 1 4.1044 0.8103 -0.1131
31 1 4.9644 3.1176 -0.1092
32 1 3.3984 5.0149 -0.0016
33 1 0.9729 4.6047 0.1057
34 1 0.1132 2.2973 0.1056
35 1 3.0188 -0.3585 1.5622
36 1 1.3421 -0.8020 2.0265
37 1 1.4008 -2.8075 0.7986
38 1 3.1635 -2.6596 1.0604
39 1 2.8270 -3.9778 -1.3592
40 1 2.6342 -2.8471 -2.7204
41 1 3.4770 -2.8964 -5.3635
42 1 4.8952 -3.8374 0.0847
43 1 7.1655 -2.2826 -1.4201
44 1 7.3307 -3.1380 0.2054
45 1 6.6953 -5.3373 -0.8869
46 1 6.5301 -4.4823 -2.5127
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000780427052.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:16:52
Heat of formation + Delta-G solvation = 50.221837 kcal
Electronic energy + Delta-G solvation = -27659.223335 eV
Core-core repulsion = 24129.511538 eV
Total energy + Delta-G solvation = -3529.711797 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.50181 -38.40819 -36.91559 -35.59784 -34.15921 -32.81345 -30.85978 -30.49207
-29.25840 -28.26579 -25.80266 -24.88302 -23.40779 -22.34971 -21.95405 -21.40173
-20.31624 -19.84573 -18.44028 -16.96904 -16.62568 -15.66897 -15.48576 -15.46077
-14.69972 -14.48909 -14.44052 -14.14386 -13.80493 -13.48796 -13.46407 -13.21847
-12.97115 -12.60546 -12.36661 -12.00916 -11.92548 -11.86727 -11.80868 -11.47693
-11.12808 -11.01536 -10.91023 -10.70168 -10.56901 -10.48793 -10.38675 -10.27645
-9.88881 -9.66816 -9.41723 -9.01962 -8.67634 -8.44216 -8.27624 -7.88093
-6.57953 -5.87277 -3.40991 1.56524 1.64235 3.37939 3.50632 3.55097
3.59520 3.89609 4.06369 4.53370 4.66057 4.81380 4.91103 4.94664
5.13636 5.18524 5.22282 5.28493 5.30809 5.36858 5.48577 5.62476
5.68988 5.71576 5.78924 5.82602 5.92355 5.93928 6.04869 6.09223
6.13735 6.17448 6.20069 6.26593 6.30361 6.32813 6.46233 6.58904
6.67536 6.74122 6.87092 6.99717 7.21138 7.22259 7.32633 7.57839
7.86173 8.13874 8.51682 9.12585 9.17576 9.76004 10.28147 11.19569
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.012297 B = 0.005861 C = 0.005140
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2276.489382 B = 4775.788497 C = 5446.112021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.064 4.064
3 C -0.050 4.050
4 C -0.100 4.100
5 C -0.118 4.118
6 C -0.128 4.128
7 C -0.125 4.125
8 C -0.117 4.117
9 C -0.119 4.119
10 C 0.099 3.901
11 N -0.618 5.618
12 C 0.359 3.641
13 N -0.538 5.538
14 C -0.270 4.270
15 H 0.060 0.940
16 C 0.042 3.958
17 N -0.888 5.888
18 Si 0.904 3.096
19 H -0.278 1.278
20 H -0.293 1.293
21 H -0.281 1.281
22 C 0.117 3.883
23 C -0.201 4.201
24 C -0.214 4.214
25 C 0.529 3.471
26 O -0.507 6.507
27 H 0.064 0.936
28 H 0.061 0.939
29 H 0.064 0.936
30 H 0.123 0.877
31 H 0.119 0.881
32 H 0.116 0.884
33 H 0.117 0.883
34 H 0.123 0.877
35 H 0.079 0.921
36 H 0.082 0.918
37 H 0.059 0.941
38 H 0.069 0.931
39 H 0.048 0.952
40 H 0.127 0.873
41 H 0.258 0.742
42 H 0.086 0.914
43 H 0.095 0.905
44 H 0.072 0.928
45 H 0.069 0.931
46 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.203 5.320 13.724 15.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.068 4.068
3 C -0.051 4.051
4 C -0.118 4.118
5 C -0.136 4.136
6 C -0.146 4.146
7 C -0.143 4.143
8 C -0.135 4.135
9 C -0.156 4.156
10 C -0.026 4.026
11 N -0.357 5.357
12 C 0.153 3.847
13 N -0.255 5.255
14 C -0.399 4.399
15 H 0.078 0.922
16 C -0.160 4.160
17 N -0.529 5.529
18 Si 0.734 3.266
19 H -0.203 1.203
20 H -0.221 1.221
21 H -0.207 1.207
22 C 0.008 3.992
23 C -0.239 4.239
24 C -0.254 4.254
25 C 0.312 3.688
26 O -0.381 6.381
27 H 0.083 0.917
28 H 0.081 0.919
29 H 0.083 0.917
30 H 0.141 0.859
31 H 0.137 0.863
32 H 0.134 0.866
33 H 0.135 0.865
34 H 0.141 0.859
35 H 0.098 0.902
36 H 0.101 0.899
37 H 0.077 0.923
38 H 0.088 0.912
39 H 0.067 0.933
40 H 0.144 0.856
41 H 0.068 0.932
42 H 0.104 0.896
43 H 0.114 0.886
44 H 0.090 0.910
45 H 0.088 0.912
46 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -5.290 5.453 12.842 14.921
hybrid contribution 0.437 0.685 -0.534 0.972
sum -4.853 6.138 12.309 14.585
Atomic orbital electron populations
1.21708 0.92106 1.02465 1.02330 1.20461 0.97068 0.92654 0.96655
1.19396 0.93397 0.93279 0.98993 1.21083 0.95118 0.97274 0.98292
1.21099 0.99654 0.92626 1.00185 1.21078 0.93596 0.98634 1.01309
1.21038 0.95441 0.96554 1.01263 1.21073 0.99564 0.92146 1.00742
1.22740 1.01864 0.94860 0.96185 1.21964 1.00704 0.96407 0.83510
1.50218 1.60643 1.16704 1.08138 1.21350 0.82114 0.86510 0.94739
1.43950 1.00216 1.47516 1.33823 1.18841 1.15665 1.15621 0.89803
0.92228 1.25069 0.97935 0.96389 0.96594 1.69772 1.37901 1.29743
1.15532 0.86230 0.77874 0.82961 0.79572 1.20284 1.22073 1.20725
1.21259 0.86516 0.97485 0.93900 1.23055 1.00605 0.99524 1.00763
1.23274 1.08876 0.92354 1.00943 1.20242 0.77620 0.82282 0.88611
1.90727 1.54978 1.70940 1.21418 0.91662 0.91946 0.91676 0.85877
0.86278 0.86556 0.86467 0.85880 0.90222 0.89932 0.92260 0.91240
0.93344 0.85634 0.93206 0.89586 0.88649 0.90968 0.91215 0.88778
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.67 7.16 37.16 0.27 -1.40 16
2 C -0.06 -1.01 0.76 -155.67 -0.12 -1.13 16
3 C -0.05 -0.81 4.76 -104.63 -0.50 -1.31 16
4 C -0.10 -1.71 8.47 -39.59 -0.34 -2.04 16
5 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16
6 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16
7 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16
8 C -0.12 -1.66 9.04 -39.58 -0.36 -2.02 16
9 C -0.12 -1.53 6.15 -25.09 -0.15 -1.69 16
10 C 0.10 1.42 7.35 -3.12 -0.02 1.40 16
11 N -0.62 -12.15 3.17 -176.12 -0.56 -12.70 16
12 C 0.36 8.21 6.12 -63.76 -0.39 7.82 16
13 N -0.54 -12.92 3.01 -169.35 -0.51 -13.43 16
14 C -0.27 -7.35 8.58 -15.06 -0.13 -7.48 16
15 H 0.06 1.67 6.45 -52.49 -0.34 1.33 16
16 C 0.04 1.19 4.99 -17.43 -0.09 1.10 16
17 N -0.89 -25.73 11.43 55.49 0.63 -25.10 16
18 Si 0.90 23.71 29.60 -169.99 -5.03 18.68 16
19 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16
20 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16
21 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16
22 C 0.12 2.41 6.60 -67.93 -0.45 1.96 16
23 C -0.20 -3.88 9.84 -26.73 -0.26 -4.14 16
24 C -0.21 -4.24 10.22 -26.73 -0.27 -4.52 16
25 C 0.53 11.11 6.24 -10.86 -0.07 11.04 16
26 O -0.51 -13.32 17.42 5.55 0.10 -13.23 16
27 H 0.06 0.91 7.67 -51.93 -0.40 0.52 16
28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
29 H 0.06 0.66 7.49 -51.93 -0.39 0.27 16
30 H 0.12 2.31 7.82 -52.49 -0.41 1.90 16
31 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16
32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16
33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16
34 H 0.12 1.48 6.00 -52.49 -0.31 1.16 16
35 H 0.08 1.05 7.18 -51.93 -0.37 0.68 16
36 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16
37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.07 0.96 7.80 -51.93 -0.41 0.56 16
39 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16
40 H 0.13 3.42 5.30 -51.93 -0.28 3.15 16
41 H 0.26 7.31 8.32 -40.82 -0.34 6.97 16
42 H 0.09 1.55 7.80 -51.93 -0.41 1.14 16
43 H 0.10 2.05 6.36 -51.93 -0.33 1.72 16
44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
45 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
46 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16
LS Contribution 371.44 15.07 5.60 5.60
Total: -1.00 -32.20 371.44 -10.83 -43.03
By element:
Atomic # 1 Polarization: 12.88 SS G_CDS: -6.99 Total: 5.89 kcal
Atomic # 6 Polarization: -4.66 SS G_CDS: -4.07 Total: -8.74 kcal
Atomic # 7 Polarization: -50.80 SS G_CDS: -0.43 Total: -51.23 kcal
Atomic # 8 Polarization: -13.32 SS G_CDS: 0.10 Total: -13.23 kcal
Atomic # 14 Polarization: 23.71 SS G_CDS: -5.03 Total: 18.68 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -32.20 -10.83 -43.03 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000780427052.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.256 kcal
(2) G-P(sol) polarization free energy of solvation -32.202 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.054 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds