Wall clock time and date at job start Tue Mar 31 2020 11:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 110.43721 * 2 1 4 4 C 1.38234 * 120.00297 * 182.93216 * 3 2 1 5 5 C 1.38229 * 120.00239 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00022 * 359.97438 * 5 4 3 7 7 C 1.38239 * 119.99755 * 359.95823 * 6 5 4 8 8 C 1.38226 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.54632 * 110.60041 * 122.61856 * 2 1 3 10 10 C 1.54486 * 101.76592 * 93.93472 * 9 2 1 11 11 N 1.46763 * 105.47424 * 25.41591 * 10 9 2 12 12 C 1.46497 * 124.34919 * 163.00053 * 11 10 9 13 13 N 1.46497 * 109.47436 * 269.95443 * 12 11 10 14 14 C 1.36940 * 119.99997 * 269.99799 * 13 12 11 15 15 H 1.08001 * 119.99559 * 141.51251 * 14 13 12 16 16 C 1.38808 * 120.00008 * 321.52080 * 14 13 12 17 17 N 1.31614 * 120.00225 * 340.13299 * 16 14 13 18 18 Si 1.86805 * 120.00033 * 160.14174 * 16 14 13 19 19 H 1.48503 * 109.46826 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47378 * 119.99240 * 18 16 14 21 21 H 1.48499 * 109.46938 * 239.99878 * 18 16 14 22 22 C 1.46495 * 119.99892 * 90.00013 * 13 12 11 23 23 C 1.53005 * 117.49779 * 191.43361 * 22 13 12 24 24 C 1.52999 * 60.00025 * 252.50915 * 23 22 13 25 25 C 1.34419 * 111.29974 * 342.98502 * 11 10 9 26 26 O 1.21287 * 124.94049 * 180.44078 * 25 11 10 27 27 H 1.09000 * 109.47180 * 59.30337 * 1 2 3 28 28 H 1.09000 * 109.47013 * 179.30388 * 1 2 3 29 29 H 1.09002 * 109.47077 * 299.29787 * 1 2 3 30 30 H 1.07998 * 119.99804 * 0.24471 * 4 3 2 31 31 H 1.08006 * 120.00515 * 179.97438 * 5 4 3 32 32 H 1.08003 * 120.00677 * 179.97438 * 6 5 4 33 33 H 1.08000 * 119.99686 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.00761 * 179.97438 * 8 7 6 35 35 H 1.08997 * 110.96857 * 212.05131 * 9 2 1 36 36 H 1.08997 * 110.96584 * 335.82084 * 9 2 1 37 37 H 1.09001 * 110.24573 * 266.41947 * 10 9 2 38 38 H 1.09001 * 110.31822 * 144.45845 * 10 9 2 39 39 H 1.08999 * 109.46991 * 29.95560 * 12 11 10 40 40 H 1.09000 * 109.47004 * 149.95407 * 12 11 10 41 41 H 0.97001 * 120.00536 * 185.07964 * 17 16 14 42 42 H 1.09000 * 115.55532 * 337.14103 * 22 13 12 43 43 H 1.08993 * 117.49946 * 0.02562 * 23 22 13 44 44 H 1.09003 * 117.49499 * 145.02325 * 23 22 13 45 45 H 1.09002 * 117.50220 * 252.50884 * 24 23 22 46 46 H 1.09002 * 117.49815 * 107.49007 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 6 3.4178 1.6424 -0.0612 5 6 3.9005 2.9376 -0.0618 6 6 3.0214 4.0028 -0.0016 7 6 1.6597 3.7726 0.0582 8 6 1.1770 2.4773 0.0584 9 6 2.0741 -0.7802 1.2191 10 6 2.2820 -2.1904 0.6234 11 7 2.4783 -1.9823 -0.8160 12 6 3.0562 -2.9764 -1.7237 13 7 4.5092 -2.7986 -1.7818 14 6 5.0598 -1.9622 -2.7158 15 1 5.9061 -1.3439 -2.4549 16 6 4.5303 -1.9089 -3.9978 17 7 3.7859 -2.8983 -4.4440 18 14 4.8742 -0.4328 -5.0898 19 1 5.7305 0.5352 -4.3583 20 1 5.5730 -0.8802 -6.3213 21 1 3.5923 0.2203 -5.4575 22 6 5.3730 -3.5156 -0.8406 23 6 6.8420 -3.0938 -0.7680 24 6 6.4587 -4.4204 -1.4267 25 6 2.0595 -0.7624 -1.1946 26 8 2.0995 -0.3353 -2.3291 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5029 0.8962 30 1 4.1044 0.8103 -0.1131 31 1 4.9644 3.1176 -0.1092 32 1 3.3984 5.0149 -0.0016 33 1 0.9729 4.6047 0.1057 34 1 0.1132 2.2973 0.1056 35 1 3.0188 -0.3585 1.5622 36 1 1.3421 -0.8020 2.0265 37 1 1.4008 -2.8075 0.7986 38 1 3.1635 -2.6596 1.0604 39 1 2.8270 -3.9778 -1.3592 40 1 2.6342 -2.8471 -2.7204 41 1 3.4770 -2.8964 -5.3635 42 1 4.8952 -3.8374 0.0847 43 1 7.1655 -2.2826 -1.4201 44 1 7.3307 -3.1380 0.2054 45 1 6.6953 -5.3373 -0.8869 46 1 6.5301 -4.4823 -2.5127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780427052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:51 Heat of formation + Delta-G solvation = 32.616872 kcal Electronic energy + Delta-G solvation = -27659.986744 eV Core-core repulsion = 24129.511538 eV Total energy + Delta-G solvation = -3530.475206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83894 -39.67964 -38.61465 -37.18362 -35.69912 -34.54068 -32.37746 -31.86615 -30.60458 -29.45930 -27.56798 -26.29563 -25.12797 -23.50004 -23.08571 -23.00263 -21.74766 -21.53007 -19.88824 -18.53081 -18.14954 -17.38769 -16.97167 -16.84754 -16.44568 -15.97745 -15.76222 -15.61640 -15.37251 -14.94225 -14.78853 -14.44617 -14.35410 -14.13157 -13.71893 -13.52214 -13.28718 -13.11136 -13.03796 -13.00164 -12.82355 -12.76740 -12.54442 -12.39569 -12.14563 -12.03123 -11.83137 -11.66120 -11.57284 -11.49307 -11.00839 -10.61038 -10.45831 -9.80469 -9.52599 -9.45945 -8.54524 -8.00383 -5.53973 0.43796 0.51058 1.25056 1.38458 1.39765 1.88715 2.35714 2.52261 2.86559 3.16872 3.43591 3.47368 3.55418 3.64550 3.81679 4.03010 4.13498 4.17008 4.23886 4.27374 4.28596 4.42857 4.47286 4.50845 4.58582 4.63429 4.73481 4.75213 4.83493 4.86745 4.92882 5.02564 5.07154 5.12456 5.13039 5.15326 5.27857 5.34477 5.42954 5.53452 5.58859 5.61663 5.66825 5.71864 5.99606 6.13118 6.39577 6.62814 7.08650 7.58538 7.76390 8.22922 9.02148 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.005861 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.489382 B = 4775.788497 C = 5446.112021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 C -0.068 4.068 4 C -0.128 4.128 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.106 4.106 10 C 0.095 3.905 11 N -0.622 5.622 12 C 0.364 3.636 13 N -0.554 5.554 14 C -0.255 4.255 15 H 0.043 0.957 16 C 0.001 3.999 17 N -0.909 5.909 18 Si 0.937 3.063 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.304 1.304 22 C 0.104 3.896 23 C -0.190 4.190 24 C -0.207 4.207 25 C 0.513 3.487 26 O -0.576 6.576 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.252 0.748 42 H 0.122 0.878 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.299 5.886 17.450 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.061 4.061 3 C -0.069 4.069 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.143 4.143 10 C -0.028 4.028 11 N -0.359 5.359 12 C 0.157 3.843 13 N -0.273 5.273 14 C -0.386 4.386 15 H 0.061 0.939 16 C -0.198 4.198 17 N -0.553 5.553 18 Si 0.767 3.233 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.232 1.232 22 C -0.004 4.004 23 C -0.229 4.229 24 C -0.248 4.248 25 C 0.300 3.700 26 O -0.455 6.455 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.369 5.999 16.636 18.796 hybrid contribution 0.788 0.544 -1.610 1.873 sum -5.582 6.543 15.025 17.313 Atomic orbital electron populations 1.21750 0.89716 1.03334 1.03417 1.20446 0.98764 0.92049 0.94832 1.19556 0.93242 0.94213 0.99885 1.21000 0.95533 0.97247 1.00833 1.21311 1.00650 0.92592 1.00607 1.21451 0.93765 0.99397 0.99983 1.21504 0.95871 0.97234 0.99362 1.21408 1.00499 0.92061 0.99958 1.22782 1.02736 0.92853 0.95979 1.22302 1.02606 0.98072 0.79838 1.49993 1.59573 1.15918 1.10432 1.20871 0.81639 0.88046 0.93697 1.44002 1.01071 1.48060 1.34138 1.18782 1.14429 1.15226 0.90127 0.93890 1.25435 0.98994 0.97614 0.97718 1.69860 1.39456 1.30728 1.15215 0.85694 0.76545 0.81651 0.79366 1.20270 1.20794 1.23164 1.21570 0.86721 0.97816 0.94298 1.23033 0.99838 0.98139 1.01847 1.23198 1.08459 0.94107 0.99035 1.21239 0.76772 0.82770 0.89243 1.90674 1.57757 1.72411 1.24627 0.93317 0.91198 0.87812 0.89071 0.85639 0.83615 0.82964 0.83473 0.90882 0.85535 0.89102 0.90190 0.91211 0.90351 0.93897 0.86064 0.91702 0.87124 0.87570 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 7.16 71.98 0.52 -2.38 16 2 C -0.06 -1.72 0.76 -52.93 -0.04 -1.76 16 3 C -0.07 -2.17 4.76 -19.87 -0.09 -2.26 16 4 C -0.13 -4.50 8.47 22.27 0.19 -4.31 16 5 C -0.13 -4.05 10.05 22.27 0.22 -3.82 16 6 C -0.13 -3.17 10.05 22.27 0.22 -2.94 16 7 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 8 C -0.12 -3.15 9.04 22.27 0.20 -2.95 16 9 C -0.11 -2.42 6.15 31.66 0.19 -2.22 16 10 C 0.09 2.45 7.35 86.83 0.64 3.09 16 11 N -0.62 -24.41 3.17 -829.71 -2.63 -27.05 16 12 C 0.36 17.02 6.12 170.96 1.05 18.06 16 13 N -0.55 -27.12 3.01 -689.70 -2.08 -29.20 16 14 C -0.26 -14.51 8.58 84.03 0.72 -13.79 16 15 H 0.04 2.55 6.45 -2.91 -0.02 2.53 16 16 C 0.00 0.08 4.99 84.86 0.42 0.50 16 17 N -0.91 -55.48 11.43 21.65 0.25 -55.24 16 18 Si 0.94 51.16 29.60 68.60 2.03 53.19 16 19 H -0.28 -14.90 7.11 99.48 0.71 -14.19 16 20 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 21 H -0.30 -17.60 7.11 99.48 0.71 -16.89 16 22 C 0.10 4.12 6.60 44.99 0.30 4.42 16 23 C -0.19 -7.11 9.84 30.60 0.30 -6.81 16 24 C -0.21 -7.99 10.22 30.59 0.31 -7.68 16 25 C 0.51 22.07 6.24 87.90 0.55 22.62 16 26 O -0.58 -32.07 17.42 -3.05 -0.05 -32.12 16 27 H 0.05 1.29 7.67 -2.39 -0.02 1.27 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 1.61 7.49 -2.39 -0.02 1.59 16 30 H 0.09 3.67 7.82 -2.91 -0.02 3.65 16 31 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.15 3.01 6.00 -2.91 -0.02 2.99 16 35 H 0.07 1.79 7.18 -2.39 -0.02 1.77 16 36 H 0.13 1.83 7.90 -2.39 -0.02 1.81 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 1.93 7.80 -2.39 -0.02 1.91 16 39 H 0.07 2.88 8.07 -2.39 -0.02 2.87 16 40 H 0.08 4.50 5.30 -2.39 -0.01 4.48 16 41 H 0.25 15.09 8.32 -92.71 -0.77 14.32 16 42 H 0.12 3.95 7.80 -2.39 -0.02 3.93 16 43 H 0.06 2.84 6.36 -2.39 -0.02 2.82 16 44 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -77.80 371.44 4.41 -73.40 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.97 Total: 21.87 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.92 Total: -4.84 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.46 Total: -111.48 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.03 Total: 53.19 kcal Total: -77.80 4.41 -73.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780427052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.014 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds