Wall clock time and date at job start Tue Mar 31 2020 10:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38096 * 119.92656 * 2 1 4 4 C 1.38062 * 120.29853 * 180.23431 * 3 2 1 5 5 C 1.39697 * 120.15990 * 359.48694 * 4 3 2 6 6 C 1.47863 * 120.07274 * 180.23199 * 5 4 3 7 7 O 1.21550 * 120.00512 * 149.74954 * 6 5 4 8 8 N 1.34783 * 120.00020 * 329.75838 * 6 5 4 9 9 C 1.46502 * 119.99482 * 6.35295 * 8 6 5 10 10 C 1.50702 * 109.46767 * 98.63352 * 9 8 6 11 11 H 1.08002 * 119.99870 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99966 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99937 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99913 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47223 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46900 * 119.99978 * 14 12 10 17 17 H 1.48495 * 109.47357 * 239.99895 * 14 12 10 18 18 C 1.46490 * 120.00016 * 186.36225 * 8 6 5 19 19 C 1.52999 * 109.47374 * 88.95845 * 18 8 6 20 20 C 1.53002 * 109.47201 * 63.54844 * 19 18 8 21 21 C 1.53010 * 109.47021 * 183.54422 * 19 18 8 22 22 C 1.52995 * 109.47202 * 303.54610 * 19 18 8 23 23 C 1.39289 * 119.85778 * 0.25401 * 5 4 3 24 24 C 1.39396 * 119.70258 * 0.02562 * 23 5 4 25 25 C 1.43198 * 120.07966 * 180.02562 * 24 23 5 26 26 N 3.48462 * 80.31249 * 179.72289 * 2 1 3 27 27 H 1.09001 * 109.47677 * 270.27784 * 1 2 3 28 28 H 1.09003 * 109.47251 * 30.28050 * 1 2 3 29 29 H 1.08997 * 109.47310 * 150.27551 * 1 2 3 30 30 H 1.07995 * 119.85128 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.91379 * 179.76625 * 4 3 2 32 32 H 1.09003 * 109.46817 * 218.62054 * 9 8 6 33 33 H 1.08994 * 109.47946 * 338.63135 * 9 8 6 34 34 H 0.97007 * 120.00154 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46952 * 208.95750 * 18 8 6 36 36 H 1.09003 * 109.47403 * 328.95908 * 18 8 6 37 37 H 1.08997 * 109.47264 * 59.99861 * 20 19 18 38 38 H 1.08998 * 109.47201 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.46511 * 299.99958 * 20 19 18 40 40 H 1.08997 * 109.46726 * 60.00346 * 21 19 18 41 41 H 1.08998 * 109.46622 * 179.97438 * 21 19 18 42 42 H 1.08998 * 109.46819 * 299.99962 * 21 19 18 43 43 H 1.09000 * 109.46975 * 65.37408 * 22 19 18 44 44 H 1.09004 * 109.47459 * 185.37936 * 22 19 18 45 45 H 1.09003 * 109.47213 * 305.37474 * 22 19 18 46 46 H 1.08007 * 120.14860 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1968 0.0000 4 6 3.5765 1.2058 -0.0049 5 6 4.2862 0.0026 0.0010 6 6 5.7648 0.0144 0.0009 7 8 6.3799 -0.8873 0.5356 8 7 6.4306 1.0254 -0.5919 9 6 5.6954 2.1803 -1.1132 10 6 5.7563 3.3071 -0.1143 11 1 6.2890 3.1757 0.8160 12 6 5.1320 4.5056 -0.3880 13 7 4.4838 4.6656 -1.5210 14 14 5.2068 5.9019 0.8505 15 1 5.9906 5.4707 2.0359 16 1 5.8591 7.0816 0.2276 17 1 3.8299 6.2633 1.2730 18 6 7.8892 0.9691 -0.7150 19 6 8.2641 0.2660 -2.0212 20 6 7.7581 1.0897 -3.2072 21 6 9.7855 0.1284 -2.1079 22 6 7.6236 -1.1231 -2.0547 23 6 3.5980 -1.2084 0.0064 24 6 2.2041 -1.2107 0.0054 25 6 1.4884 -2.4510 0.0115 26 7 0.9206 -3.4349 0.0166 27 1 -0.3634 0.0050 1.0276 28 1 -0.3634 0.8875 -0.5182 29 1 -0.3634 -0.8924 -0.5095 30 1 1.6523 2.1300 -0.0004 31 1 4.1090 2.1454 -0.0087 32 1 6.1445 2.5030 -2.0525 33 1 4.6555 1.9022 -1.2842 34 1 4.0442 5.5087 -1.7135 35 1 8.2929 1.9816 -0.7186 36 1 8.3039 0.4155 0.1275 37 1 8.2144 2.0793 -3.1833 38 1 8.0247 0.5886 -4.1377 39 1 6.6742 1.1877 -3.1453 40 1 10.1459 -0.4584 -1.2631 41 1 10.0524 -0.3728 -3.0383 42 1 10.2417 1.1181 -2.0841 43 1 6.5388 -1.0222 -2.0892 44 1 7.9670 -1.6603 -2.9388 45 1 7.9088 -1.6764 -1.1599 46 1 4.1420 -2.1415 0.0105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799335307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:04 Heat of formation + Delta-G solvation = 22.623864 kcal Electronic energy + Delta-G solvation = -26942.473094 eV Core-core repulsion = 23411.564559 eV Total energy + Delta-G solvation = -3530.908535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25984 -38.74519 -36.71911 -36.18846 -34.80917 -32.65055 -32.49047 -31.04563 -27.98944 -27.71349 -26.97093 -26.77836 -25.54532 -23.43474 -23.12260 -21.67769 -19.99482 -18.56979 -17.75143 -16.80023 -16.07736 -15.67833 -15.45873 -15.06182 -14.79330 -14.53727 -14.25106 -14.09108 -13.69990 -13.39148 -13.22890 -13.07603 -13.03436 -12.73973 -12.62555 -12.49612 -12.24909 -12.12950 -11.88554 -11.83270 -11.52076 -11.30709 -11.26401 -11.13923 -11.04172 -10.97293 -10.69483 -10.46955 -10.33624 -10.24525 -9.88124 -9.80345 -9.15859 -8.84055 -8.62410 -8.30649 -7.75088 -6.38981 -4.48834 0.98121 1.34329 2.76688 2.99418 3.10568 3.21104 3.25179 3.51609 3.76257 4.10388 4.14805 4.24182 4.83427 4.90790 4.99064 5.15234 5.17577 5.26331 5.35180 5.36605 5.57418 5.63053 5.76512 5.85027 5.86028 5.89903 5.92197 6.08088 6.11011 6.16012 6.18571 6.20716 6.29324 6.35347 6.44775 6.47085 6.54563 6.57645 6.73619 6.75644 6.78629 6.83355 7.09174 7.16997 7.42845 7.57180 7.60004 7.82913 8.23819 8.61638 8.89690 9.20132 10.64679 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.006202 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.327474 B = 4513.281059 C = 6955.493934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.021 4.021 3 C -0.135 4.135 4 C -0.058 4.058 5 C -0.141 4.141 6 C 0.559 3.441 7 O -0.564 6.564 8 N -0.582 5.582 9 C 0.201 3.799 10 C -0.546 4.546 11 H 0.067 0.933 12 C 0.070 3.930 13 N -0.879 5.879 14 Si 0.894 3.106 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.131 3.869 19 C -0.084 4.084 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.016 4.016 24 C -0.068 4.068 25 C 0.271 3.729 26 N -0.439 5.439 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.209 0.791 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 -3.655 -1.293 3.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.024 4.024 3 C -0.153 4.153 4 C -0.076 4.076 5 C -0.144 4.144 6 C 0.348 3.652 7 O -0.446 6.446 8 N -0.311 5.311 9 C 0.082 3.918 10 C -0.584 4.584 11 H 0.085 0.915 12 C -0.135 4.135 13 N -0.516 5.516 14 Si 0.721 3.279 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.206 1.206 18 C 0.008 3.992 19 C -0.086 4.086 20 C -0.199 4.199 21 C -0.194 4.194 22 C -0.190 4.190 23 C -0.038 4.038 24 C -0.071 4.071 25 C -0.043 4.043 26 N -0.114 5.114 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.224 0.776 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.687 -5.485 -1.141 5.645 hybrid contribution 0.179 1.343 0.480 1.437 sum -0.508 -4.142 -0.661 4.226 Atomic orbital electron populations 1.20927 0.90941 1.03211 1.02878 1.20085 0.95875 0.91781 0.94658 1.21065 0.94497 0.96966 1.02805 1.23768 0.94803 1.01987 0.87020 1.19888 0.94070 0.93559 1.06862 1.18078 0.86645 0.81981 0.78527 1.90680 1.69302 1.38028 1.46554 1.47966 1.06794 1.20079 1.56211 1.20464 0.93768 0.81982 0.95601 1.21533 1.34841 0.97360 1.04644 0.91492 1.24984 0.94640 0.98380 0.95498 1.69932 1.32926 1.26132 1.22585 0.86476 0.78240 0.81791 0.81356 1.19435 1.20694 1.20551 1.21382 0.80820 1.00884 0.96163 1.20957 0.95162 0.96098 0.96343 1.21976 1.02349 0.99223 0.96308 1.21784 0.94800 1.01468 1.01317 1.21843 1.00508 0.95603 1.01083 1.21100 0.91368 0.98255 0.93031 1.15642 0.91842 0.86464 1.13188 1.25648 0.92993 0.92683 0.93004 1.81195 1.09107 1.10912 1.10225 0.90457 0.90356 0.91803 0.84636 0.77553 0.93665 0.91895 0.92138 0.90142 0.90873 0.92601 0.93722 0.91512 0.92803 0.92933 0.92671 0.93101 0.93898 0.91933 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.60 36.00 0.35 -0.99 16 2 C -0.02 -0.29 5.92 -104.13 -0.62 -0.91 16 3 C -0.14 -2.04 9.67 -39.70 -0.38 -2.42 16 4 C -0.06 -1.03 7.47 -39.10 -0.29 -1.32 16 5 C -0.14 -2.51 5.57 -105.02 -0.59 -3.10 16 6 C 0.56 10.90 5.67 -12.32 -0.07 10.83 16 7 O -0.56 -11.84 14.66 5.32 0.08 -11.76 16 8 N -0.58 -11.09 2.01 -176.17 -0.35 -11.44 16 9 C 0.20 4.16 3.91 -5.19 -0.02 4.14 16 10 C -0.55 -12.38 7.49 -34.44 -0.26 -12.64 16 11 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.07 1.62 5.34 -17.82 -0.10 1.53 16 13 N -0.88 -21.09 13.29 55.43 0.74 -20.35 16 14 Si 0.89 18.45 29.54 -169.99 -5.02 13.43 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 C 0.13 2.25 4.59 -4.05 -0.02 2.23 16 19 C -0.08 -1.26 0.85 -154.50 -0.13 -1.39 16 20 C -0.14 -2.13 7.46 37.16 0.28 -1.85 16 21 C -0.14 -1.70 8.47 37.16 0.31 -1.38 16 22 C -0.13 -2.05 7.12 37.16 0.26 -1.79 16 23 C -0.02 -0.26 9.30 -38.76 -0.36 -0.62 16 24 C -0.07 -1.00 5.73 -106.99 -0.61 -1.61 16 25 C 0.27 4.06 13.77 -22.48 -0.31 3.75 16 26 N -0.44 -7.12 18.54 41.84 0.78 -6.35 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.06 0.70 7.07 -51.93 -0.37 0.34 16 30 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.21 4.18 3.09 -52.49 -0.16 4.02 16 32 H 0.05 0.99 5.78 -51.93 -0.30 0.69 16 33 H 0.06 1.33 4.04 -51.98 -0.21 1.12 16 34 H 0.27 6.18 8.31 -40.82 -0.34 5.84 16 35 H 0.08 1.39 8.06 -51.93 -0.42 0.98 16 36 H 0.07 1.29 7.37 -51.93 -0.38 0.91 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.13 5.83 -51.93 -0.30 0.82 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.86 6.64 -51.93 -0.34 0.51 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 1.03 7.28 -51.93 -0.38 0.65 16 46 H 0.13 2.07 7.92 -52.48 -0.42 1.65 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -24.92 369.63 -7.39 -32.32 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.63 Total: 6.13 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.55 Total: -7.55 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 1.16 Total: -38.14 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -24.92 -7.39 -32.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799335307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.941 kcal (2) G-P(sol) polarization free energy of solvation -24.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds