Wall clock time and date at job start Tue Mar 31 2020 10:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38093 * 119.93094 * 2 1 4 4 C 1.38058 * 120.30428 * 180.23428 * 3 2 1 5 5 C 1.39700 * 120.15731 * 359.49309 * 4 3 2 6 6 C 1.47870 * 120.07055 * 180.23469 * 5 4 3 7 7 O 1.21550 * 119.99728 * 150.10989 * 6 5 4 8 8 N 1.34769 * 119.99745 * 330.10640 * 6 5 4 9 9 C 1.46504 * 120.00355 * 6.16661 * 8 6 5 10 10 C 1.50701 * 109.46955 * 98.32887 * 9 8 6 11 11 H 1.08000 * 120.00165 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00050 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00109 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99558 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47538 * 89.99980 * 14 12 10 16 16 H 1.48500 * 109.46946 * 209.99454 * 14 12 10 17 17 H 1.48494 * 109.47343 * 329.99320 * 14 12 10 18 18 C 1.46502 * 120.00119 * 186.16654 * 8 6 5 19 19 C 1.52997 * 109.47070 * 86.77304 * 18 8 6 20 20 C 1.53009 * 109.46689 * 175.21421 * 19 18 8 21 21 C 1.52995 * 109.46834 * 63.59109 * 20 19 18 22 22 C 1.52996 * 109.46524 * 183.58844 * 20 19 18 23 23 C 1.39288 * 119.85845 * 0.24692 * 5 4 3 24 24 C 1.39391 * 119.70222 * 0.02562 * 23 5 4 25 25 C 1.43197 * 120.08440 * 180.02562 * 24 23 5 26 26 N 3.48463 * 80.31095 * 179.72467 * 2 1 3 27 27 H 1.09002 * 109.47248 * 270.27636 * 1 2 3 28 28 H 1.09007 * 109.47249 * 30.27651 * 1 2 3 29 29 H 1.08994 * 109.47149 * 150.27308 * 1 2 3 30 30 H 1.08000 * 119.84930 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.92037 * 179.76221 * 4 3 2 32 32 H 1.09000 * 109.47298 * 218.33180 * 9 8 6 33 33 H 1.08999 * 109.46873 * 338.33106 * 9 8 6 34 34 H 0.97003 * 119.99877 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47281 * 206.77782 * 18 8 6 36 36 H 1.09008 * 109.46890 * 326.77616 * 18 8 6 37 37 H 1.08995 * 109.47544 * 295.21197 * 19 18 8 38 38 H 1.08998 * 109.47038 * 55.22104 * 19 18 8 39 39 H 1.08996 * 109.47306 * 303.58532 * 20 19 18 40 40 H 1.09001 * 109.46993 * 295.19867 * 21 20 19 41 41 H 1.08993 * 109.47378 * 55.20763 * 21 20 19 42 42 H 1.09004 * 109.46520 * 175.20761 * 21 20 19 43 43 H 1.09002 * 109.47875 * 60.00449 * 22 20 19 44 44 H 1.09002 * 109.46728 * 180.02562 * 22 20 19 45 45 H 1.09002 * 109.47449 * 300.00012 * 22 20 19 46 46 H 1.08006 * 120.15243 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1968 0.0000 4 6 3.5765 1.2058 -0.0049 5 6 4.2862 0.0025 0.0008 6 6 5.7649 0.0144 0.0008 7 8 6.3799 -0.8909 0.5297 8 7 6.4305 1.0289 -0.5856 9 6 5.6950 2.1853 -1.1035 10 6 5.7456 3.3049 -0.0961 11 1 6.2731 3.1689 0.8364 12 6 5.1192 4.5034 -0.3653 13 7 5.1637 5.4806 0.5136 14 14 4.2073 4.7388 -1.9785 15 1 2.7920 4.3210 -1.8128 16 1 4.2581 6.1699 -2.3715 17 1 4.8470 3.9128 -3.0338 18 6 7.8897 0.9754 -0.7053 19 6 8.2693 0.2308 -1.9869 20 6 9.7872 0.2783 -2.1736 21 6 10.4661 -0.4649 -1.0214 22 6 10.1588 -0.3881 -3.4997 23 6 3.5980 -1.2085 0.0063 24 6 2.2041 -1.2108 0.0054 25 6 1.4883 -2.4510 0.0115 26 7 0.9205 -3.4349 0.0165 27 1 -0.3634 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6524 2.1300 -0.0004 31 1 4.1091 2.1453 -0.0087 32 1 6.1491 2.5161 -2.0375 33 1 4.6572 1.9049 -1.2833 34 1 4.7227 6.3236 0.3243 35 1 8.2886 1.9891 -0.7423 36 1 8.3059 0.4523 0.1557 37 1 7.9445 -0.8070 -1.9139 38 1 7.7834 0.7046 -2.8398 39 1 10.1199 1.3162 -2.1828 40 1 10.2711 0.0594 -0.0859 41 1 10.0703 -1.4785 -0.9594 42 1 11.5410 -0.5047 -1.1982 43 1 9.6751 0.1412 -4.3206 44 1 11.2402 -0.3548 -3.6325 45 1 9.8261 -1.4261 -3.4906 46 1 4.1419 -2.1416 0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799609997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:00 Heat of formation + Delta-G solvation = 20.360507 kcal Electronic energy + Delta-G solvation = -26191.985821 eV Core-core repulsion = 22660.979139 eV Total energy + Delta-G solvation = -3531.006682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26451 -38.62351 -36.65264 -36.28173 -35.21376 -32.91961 -32.69913 -31.27647 -29.52338 -28.12132 -27.15943 -27.01239 -24.00302 -23.16831 -22.81493 -21.56185 -19.95787 -19.67104 -17.93138 -17.21532 -16.25605 -15.80806 -15.59503 -15.09848 -15.07745 -14.62667 -14.36373 -14.23066 -13.80690 -13.54507 -13.32839 -13.28525 -13.11131 -13.07926 -12.80563 -12.69655 -12.52907 -12.29823 -12.17669 -12.04378 -11.78619 -11.58878 -11.37296 -11.15840 -11.02898 -11.00000 -10.84996 -10.51498 -10.36650 -10.28395 -10.17149 -9.79663 -9.29772 -9.00031 -8.75835 -8.48141 -7.87102 -6.44021 -4.48173 0.86118 1.22684 2.69254 2.88273 3.01982 3.12737 3.14838 3.41827 3.61840 4.01007 4.06447 4.07421 4.72062 4.82834 4.88547 4.97637 5.05651 5.07306 5.13781 5.26207 5.50374 5.51686 5.56506 5.66716 5.68262 5.76797 5.78804 5.82529 5.90882 5.95029 5.99319 6.03482 6.07856 6.17899 6.25233 6.28978 6.33589 6.33960 6.51233 6.55893 6.61392 6.61890 6.66433 7.00535 7.13231 7.27052 7.52304 7.93021 8.22808 8.63932 8.75012 9.12344 10.66907 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.005426 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.801859 B = 5159.413005 C = 7563.760797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.020 4.020 3 C -0.138 4.138 4 C -0.067 4.067 5 C -0.138 4.138 6 C 0.560 3.440 7 O -0.560 6.560 8 N -0.581 5.581 9 C 0.179 3.821 10 C -0.549 4.549 11 H 0.085 0.915 12 C 0.083 3.917 13 N -0.875 5.875 14 Si 0.859 3.141 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.260 1.260 18 C 0.120 3.880 19 C -0.129 4.129 20 C -0.094 4.094 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.014 4.014 24 C -0.064 4.064 25 C 0.270 3.730 26 N -0.435 5.435 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.203 0.797 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.271 0.729 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -5.977 -5.606 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.022 4.022 3 C -0.156 4.156 4 C -0.085 4.085 5 C -0.141 4.141 6 C 0.349 3.651 7 O -0.441 6.441 8 N -0.309 5.309 9 C 0.059 3.941 10 C -0.586 4.586 11 H 0.103 0.897 12 C -0.124 4.124 13 N -0.510 5.510 14 Si 0.684 3.316 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.184 1.184 18 C -0.003 4.003 19 C -0.168 4.168 20 C -0.113 4.113 21 C -0.205 4.205 22 C -0.202 4.202 23 C -0.036 4.036 24 C -0.067 4.067 25 C -0.045 4.045 26 N -0.110 5.110 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.219 0.781 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.912 -7.744 -5.293 9.424 hybrid contribution -0.297 0.820 -0.804 1.187 sum -1.209 -6.924 -6.097 9.305 Atomic orbital electron populations 1.20941 0.90773 1.03240 1.03086 1.20094 0.95986 0.91711 0.94447 1.21087 0.94417 0.97159 1.02962 1.23736 0.94833 1.02005 0.87893 1.19859 0.93951 0.93568 1.06708 1.18108 0.86705 0.81945 0.78369 1.90700 1.69367 1.37806 1.46213 1.47749 1.07017 1.19329 1.56842 1.20680 0.93527 0.84159 0.95769 1.21347 1.36107 0.96228 1.04936 0.89734 1.24924 0.95621 0.95414 0.96407 1.69879 1.41984 1.04460 1.34724 0.87102 0.81183 0.78767 0.84575 1.19030 1.20449 1.18391 1.21423 0.80012 1.01296 0.97560 1.22022 0.94987 1.01186 0.98581 1.21054 0.95157 1.00022 0.95057 1.21878 0.99563 1.00640 0.98444 1.21825 1.00763 1.00631 0.97013 1.21124 0.91393 0.98286 0.92773 1.15651 0.91824 0.86513 1.12757 1.25609 0.93063 0.92676 0.93127 1.81207 1.09008 1.10835 1.09999 0.90240 0.90359 0.91695 0.84564 0.78097 0.94829 0.92854 0.91890 0.89826 0.90426 0.91902 0.91915 0.91020 0.92232 0.92697 0.93210 0.92847 0.92984 0.92908 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.60 36.00 0.35 -0.93 16 2 C -0.02 -0.26 5.92 -104.13 -0.62 -0.87 16 3 C -0.14 -2.01 9.67 -39.70 -0.38 -2.39 16 4 C -0.07 -1.16 7.47 -39.10 -0.29 -1.45 16 5 C -0.14 -2.42 5.57 -105.02 -0.59 -3.00 16 6 C 0.56 10.97 7.44 -12.32 -0.09 10.88 16 7 O -0.56 -11.95 16.31 5.32 0.09 -11.86 16 8 N -0.58 -11.10 2.47 -176.16 -0.44 -11.54 16 9 C 0.18 3.58 3.70 -5.19 -0.02 3.57 16 10 C -0.55 -12.89 8.03 -34.44 -0.28 -13.17 16 11 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 12 C 0.08 1.99 5.35 -17.82 -0.10 1.90 16 13 N -0.88 -23.03 13.96 55.43 0.77 -22.26 16 14 Si 0.86 17.51 27.36 -169.99 -4.65 12.86 16 15 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.26 -5.07 6.54 56.52 0.37 -4.70 16 18 C 0.12 2.04 5.03 -4.04 -0.02 2.01 16 19 C -0.13 -1.86 5.01 -26.73 -0.13 -1.99 16 20 C -0.09 -1.13 2.94 -90.62 -0.27 -1.40 16 21 C -0.15 -1.74 8.79 37.16 0.33 -1.41 16 22 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 23 C -0.01 -0.22 9.30 -38.76 -0.36 -0.58 16 24 C -0.06 -0.90 5.73 -106.99 -0.61 -1.52 16 25 C 0.27 3.89 13.77 -22.47 -0.31 3.58 16 26 N -0.43 -6.84 18.54 41.84 0.78 -6.06 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.69 8.09 -51.92 -0.42 0.27 16 29 H 0.06 0.67 7.07 -51.93 -0.37 0.31 16 30 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.20 3.97 2.92 -52.49 -0.15 3.81 16 32 H 0.03 0.67 7.19 -51.93 -0.37 0.30 16 33 H 0.05 1.03 3.49 -51.97 -0.18 0.85 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 36 H 0.08 1.36 6.18 -51.92 -0.32 1.04 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.73 6.88 -51.93 -0.36 0.38 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.14 2.02 7.92 -52.48 -0.42 1.61 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -26.84 377.39 -7.64 -34.47 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.82 Total: 6.68 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.05 Total: -7.97 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 1.11 Total: -39.86 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -4.65 Total: 12.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -26.84 -7.64 -34.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799609997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.833 kcal (2) G-P(sol) polarization free energy of solvation -26.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds