Wall clock time and date at job start Tue Mar 31 2020 10:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38093 * 119.93094 * 2 1 4 4 C 1.38058 * 120.30428 * 180.23428 * 3 2 1 5 5 C 1.39700 * 120.15731 * 359.49309 * 4 3 2 6 6 C 1.47870 * 120.07055 * 180.23469 * 5 4 3 7 7 O 1.21550 * 119.99728 * 150.10989 * 6 5 4 8 8 N 1.34769 * 119.99745 * 330.10640 * 6 5 4 9 9 C 1.46504 * 120.00355 * 6.16661 * 8 6 5 10 10 C 1.50701 * 109.46955 * 98.32887 * 9 8 6 11 11 H 1.08000 * 120.00165 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00050 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00109 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99558 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47538 * 89.99980 * 14 12 10 16 16 H 1.48500 * 109.46946 * 209.99454 * 14 12 10 17 17 H 1.48494 * 109.47343 * 329.99320 * 14 12 10 18 18 C 1.46502 * 120.00119 * 186.16654 * 8 6 5 19 19 C 1.52997 * 109.47070 * 86.77304 * 18 8 6 20 20 C 1.53009 * 109.46689 * 175.21421 * 19 18 8 21 21 C 1.52995 * 109.46834 * 63.59109 * 20 19 18 22 22 C 1.52996 * 109.46524 * 183.58844 * 20 19 18 23 23 C 1.39288 * 119.85845 * 0.24692 * 5 4 3 24 24 C 1.39391 * 119.70222 * 0.02562 * 23 5 4 25 25 C 1.43197 * 120.08440 * 180.02562 * 24 23 5 26 26 N 3.48463 * 80.31095 * 179.72467 * 2 1 3 27 27 H 1.09002 * 109.47248 * 270.27636 * 1 2 3 28 28 H 1.09007 * 109.47249 * 30.27651 * 1 2 3 29 29 H 1.08994 * 109.47149 * 150.27308 * 1 2 3 30 30 H 1.08000 * 119.84930 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.92037 * 179.76221 * 4 3 2 32 32 H 1.09000 * 109.47298 * 218.33180 * 9 8 6 33 33 H 1.08999 * 109.46873 * 338.33106 * 9 8 6 34 34 H 0.97003 * 119.99877 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47281 * 206.77782 * 18 8 6 36 36 H 1.09008 * 109.46890 * 326.77616 * 18 8 6 37 37 H 1.08995 * 109.47544 * 295.21197 * 19 18 8 38 38 H 1.08998 * 109.47038 * 55.22104 * 19 18 8 39 39 H 1.08996 * 109.47306 * 303.58532 * 20 19 18 40 40 H 1.09001 * 109.46993 * 295.19867 * 21 20 19 41 41 H 1.08993 * 109.47378 * 55.20763 * 21 20 19 42 42 H 1.09004 * 109.46520 * 175.20761 * 21 20 19 43 43 H 1.09002 * 109.47875 * 60.00449 * 22 20 19 44 44 H 1.09002 * 109.46728 * 180.02562 * 22 20 19 45 45 H 1.09002 * 109.47449 * 300.00012 * 22 20 19 46 46 H 1.08006 * 120.15243 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1968 0.0000 4 6 3.5765 1.2058 -0.0049 5 6 4.2862 0.0025 0.0008 6 6 5.7649 0.0144 0.0008 7 8 6.3799 -0.8909 0.5297 8 7 6.4305 1.0289 -0.5856 9 6 5.6950 2.1853 -1.1035 10 6 5.7456 3.3049 -0.0961 11 1 6.2731 3.1689 0.8364 12 6 5.1192 4.5034 -0.3653 13 7 5.1637 5.4806 0.5136 14 14 4.2073 4.7388 -1.9785 15 1 2.7920 4.3210 -1.8128 16 1 4.2581 6.1699 -2.3715 17 1 4.8470 3.9128 -3.0338 18 6 7.8897 0.9754 -0.7053 19 6 8.2693 0.2308 -1.9869 20 6 9.7872 0.2783 -2.1736 21 6 10.4661 -0.4649 -1.0214 22 6 10.1588 -0.3881 -3.4997 23 6 3.5980 -1.2085 0.0063 24 6 2.2041 -1.2108 0.0054 25 6 1.4883 -2.4510 0.0115 26 7 0.9205 -3.4349 0.0165 27 1 -0.3634 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6524 2.1300 -0.0004 31 1 4.1091 2.1453 -0.0087 32 1 6.1491 2.5161 -2.0375 33 1 4.6572 1.9049 -1.2833 34 1 4.7227 6.3236 0.3243 35 1 8.2886 1.9891 -0.7423 36 1 8.3059 0.4523 0.1557 37 1 7.9445 -0.8070 -1.9139 38 1 7.7834 0.7046 -2.8398 39 1 10.1199 1.3162 -2.1828 40 1 10.2711 0.0594 -0.0859 41 1 10.0703 -1.4785 -0.9594 42 1 11.5410 -0.5047 -1.1982 43 1 9.6751 0.1412 -4.3206 44 1 11.2402 -0.3548 -3.6325 45 1 9.8261 -1.4261 -3.4906 46 1 4.1419 -2.1416 0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799609997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:58 Heat of formation + Delta-G solvation = 8.519520 kcal Electronic energy + Delta-G solvation = -26192.499284 eV Core-core repulsion = 22660.979139 eV Total energy + Delta-G solvation = -3531.520145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.65228 -39.94222 -37.86250 -37.56430 -36.65181 -34.55021 -33.99144 -32.52972 -30.87643 -29.64036 -28.25509 -27.98707 -25.26751 -24.62473 -24.29207 -22.77409 -21.18028 -20.84956 -19.37875 -19.03529 -17.66431 -17.25203 -16.82871 -16.44781 -16.29293 -16.07331 -15.69284 -15.37636 -15.11000 -14.73022 -14.66987 -14.53045 -14.42591 -14.20857 -14.09596 -13.90140 -13.86192 -13.47376 -13.18377 -13.08791 -12.94532 -12.85570 -12.70324 -12.51695 -12.42061 -12.22776 -12.06119 -11.79443 -11.67860 -11.57121 -11.53328 -11.41504 -10.84023 -10.75445 -9.98502 -9.76892 -9.42151 -8.30209 -6.39677 -0.36379 -0.01195 1.43288 1.47981 1.51638 1.56086 1.59114 2.05913 2.19890 2.35584 2.78439 2.80684 3.02422 3.51129 3.73716 3.87317 3.96572 3.99075 4.08244 4.16800 4.29218 4.34533 4.56285 4.57448 4.63911 4.69533 4.70841 4.76351 4.79867 4.85073 4.85719 4.90705 4.95655 5.03792 5.11043 5.13937 5.15614 5.18954 5.32782 5.36516 5.39124 5.43361 5.47257 5.52097 5.68130 5.78585 6.15672 6.35615 6.57830 6.69647 7.16341 7.28678 8.84698 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008842 B = 0.005426 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.801859 B = 5159.413005 C = 7563.760797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.001 4.001 3 C -0.133 4.133 4 C -0.082 4.082 5 C -0.156 4.156 6 C 0.553 3.447 7 O -0.586 6.586 8 N -0.586 5.586 9 C 0.188 3.812 10 C -0.543 4.543 11 H 0.034 0.966 12 C 0.036 3.964 13 N -0.928 5.928 14 Si 0.917 3.083 15 H -0.238 1.238 16 H -0.287 1.287 17 H -0.242 1.242 18 C 0.117 3.883 19 C -0.117 4.117 20 C -0.092 4.092 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.011 4.011 24 C -0.058 4.058 25 C 0.286 3.714 26 N -0.452 5.452 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.158 0.842 31 H 0.179 0.821 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.272 0.728 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -6.646 -7.679 10.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.004 4.004 3 C -0.151 4.151 4 C -0.100 4.100 5 C -0.159 4.159 6 C 0.343 3.657 7 O -0.470 6.470 8 N -0.314 5.314 9 C 0.067 3.933 10 C -0.581 4.581 11 H 0.053 0.947 12 C -0.166 4.166 13 N -0.566 5.566 14 Si 0.738 3.262 15 H -0.162 1.162 16 H -0.213 1.213 17 H -0.166 1.166 18 C -0.005 4.005 19 C -0.156 4.156 20 C -0.111 4.111 21 C -0.204 4.204 22 C -0.198 4.198 23 C -0.032 4.032 24 C -0.061 4.061 25 C -0.028 4.028 26 N -0.128 5.128 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.176 0.824 31 H 0.195 0.805 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.825 -8.435 -7.373 11.554 hybrid contribution 0.305 0.980 -0.032 1.027 sum -2.520 -7.455 -7.405 10.806 Atomic orbital electron populations 1.21059 0.88092 1.04515 1.04392 1.20388 0.97702 0.90544 0.91723 1.21257 0.93152 0.98619 1.02033 1.23433 0.96170 1.00637 0.89753 1.19709 0.92625 0.94597 1.08960 1.18529 0.87845 0.81549 0.77749 1.90668 1.70216 1.38752 1.47318 1.47857 1.07786 1.19068 1.56682 1.20558 0.94838 0.83232 0.94684 1.21320 1.35204 0.97751 1.03837 0.94732 1.25685 0.96317 0.94683 0.99902 1.70029 1.43949 1.05280 1.37322 0.86164 0.81356 0.78414 0.80233 1.16170 1.21252 1.16565 1.21516 0.79155 1.01131 0.98716 1.21913 0.96867 0.99911 0.96869 1.21063 0.93251 1.00557 0.96256 1.21860 1.00778 0.99956 0.97767 1.21788 1.01853 1.00366 0.95801 1.21110 0.92060 0.97633 0.92425 1.15642 0.91159 0.86952 1.12356 1.25450 0.92514 0.92302 0.92524 1.81239 1.09751 1.11248 1.10591 0.88744 0.88090 0.91465 0.82425 0.80467 0.94138 0.90930 0.91857 0.90521 0.91616 0.92893 0.91652 0.90729 0.93561 0.93330 0.91265 0.92437 0.91415 0.92934 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 9.60 71.23 0.68 -1.34 16 2 C 0.00 -0.02 5.92 -19.54 -0.12 -0.13 16 3 C -0.13 -3.48 9.67 22.19 0.21 -3.27 16 4 C -0.08 -2.75 7.47 22.58 0.17 -2.58 16 5 C -0.16 -5.43 5.57 -20.12 -0.11 -5.55 16 6 C 0.55 22.26 7.44 86.80 0.65 22.90 16 7 O -0.59 -25.92 16.31 -3.87 -0.06 -25.98 16 8 N -0.59 -23.07 2.47 -829.53 -2.05 -25.11 16 9 C 0.19 7.54 3.70 85.63 0.32 7.86 16 10 C -0.54 -26.45 8.03 25.60 0.21 -26.24 16 11 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 12 C 0.04 1.74 5.35 84.66 0.45 2.20 16 13 N -0.93 -50.45 13.96 21.45 0.30 -50.15 16 14 Si 0.92 34.98 27.36 68.60 1.88 36.86 16 15 H -0.24 -8.04 7.11 99.48 0.71 -7.34 16 16 H -0.29 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.24 -8.51 6.54 99.48 0.65 -7.86 16 18 C 0.12 4.15 5.03 86.38 0.43 4.58 16 19 C -0.12 -3.39 5.01 30.60 0.15 -3.23 16 20 C -0.09 -2.17 2.94 -10.79 -0.03 -2.20 16 21 C -0.15 -3.40 8.79 71.98 0.63 -2.77 16 22 C -0.14 -2.72 9.19 71.98 0.66 -2.06 16 23 C -0.01 -0.32 9.30 22.80 0.21 -0.11 16 24 C -0.06 -1.49 5.73 -21.40 -0.12 -1.61 16 25 C 0.29 7.57 13.77 88.33 1.22 8.79 16 26 N -0.45 -13.25 18.54 19.00 0.35 -12.90 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.26 8.09 -2.38 -0.02 1.24 16 29 H 0.07 1.12 7.07 -2.39 -0.02 1.10 16 30 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 31 H 0.18 6.98 2.92 -2.91 -0.01 6.97 16 32 H 0.04 1.57 7.19 -2.39 -0.02 1.56 16 33 H 0.07 2.72 3.49 -2.42 -0.01 2.71 16 34 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.08 2.76 8.05 -2.39 -0.02 2.74 16 36 H 0.07 2.46 6.18 -2.38 -0.01 2.44 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.18 6.88 -2.39 -0.02 1.16 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.14 4.05 7.92 -2.91 -0.02 4.02 16 Total: -1.00 -60.34 377.39 6.96 -53.38 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.93 Total: 28.67 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.62 Total: -4.77 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -1.40 Total: -88.16 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.06 Total: -25.98 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 1.88 Total: 36.86 kcal Total: -60.34 6.96 -53.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799609997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.898 kcal (2) G-P(sol) polarization free energy of solvation -60.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds