Wall clock time and date at job start Tue Mar 31 2020 10:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38285 * 119.93275 * 2 1 4 4 C 1.38108 * 120.06916 * 180.28024 * 3 2 1 5 5 C 1.38869 * 119.92932 * 359.47055 * 4 3 2 6 6 N 1.39924 * 120.06692 * 180.30133 * 5 4 3 7 7 C 1.46501 * 119.99684 * 247.67276 * 6 5 4 8 8 C 1.53000 * 109.47203 * 90.00237 * 7 6 5 9 9 C 1.47202 * 109.47399 * 180.02562 * 8 7 6 10 10 N 7.71666 * 146.82540 * 267.40610 * 2 1 3 11 11 C 1.34777 * 120.00267 * 67.68046 * 6 5 4 12 12 O 1.21286 * 120.00048 * 4.81901 * 11 6 5 13 13 C 1.50700 * 119.99602 * 184.83146 * 11 6 5 14 14 C 1.53002 * 109.46688 * 179.97438 * 13 11 6 15 15 C 1.53005 * 109.47122 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47122 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46688 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00472 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99810 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99854 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00161 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46923 * 89.99765 * 21 19 17 23 23 H 1.48495 * 109.47357 * 209.99726 * 21 19 17 24 24 H 1.48504 * 109.47188 * 330.00063 * 21 19 17 25 25 C 1.38871 * 119.86169 * 0.27417 * 5 4 3 26 26 C 1.38112 * 119.92691 * 0.02562 * 25 5 4 27 27 H 1.09009 * 109.46827 * 270.23476 * 1 2 3 28 28 H 1.08997 * 109.47445 * 30.22893 * 1 2 3 29 29 H 1.08996 * 109.47590 * 150.23434 * 1 2 3 30 30 H 1.08005 * 119.95857 * 0.04401 * 3 2 1 31 31 H 1.08007 * 120.03350 * 179.73996 * 4 3 2 32 32 H 1.08998 * 109.47171 * 210.00024 * 7 6 5 33 33 H 1.09000 * 109.47209 * 329.99991 * 7 6 5 34 34 H 1.08998 * 109.46883 * 299.99963 * 8 7 6 35 35 H 1.09000 * 109.47239 * 59.99773 * 8 7 6 36 36 H 1.09006 * 109.46923 * 299.99072 * 13 11 6 37 37 H 1.08999 * 109.47466 * 59.99499 * 13 11 6 38 38 H 1.08993 * 109.47113 * 299.99242 * 14 13 11 39 39 H 1.08999 * 109.47271 * 59.99754 * 14 13 11 40 40 H 1.08998 * 109.47162 * 300.00001 * 15 14 13 41 41 H 1.08999 * 109.46980 * 59.99905 * 15 14 13 42 42 H 1.09001 * 109.46996 * 299.99271 * 16 15 14 43 43 H 1.08999 * 109.47271 * 60.00083 * 16 15 14 44 44 H 0.97000 * 120.00056 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.03892 * 180.02562 * 25 5 4 46 46 H 1.08004 * 119.96632 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2017 -0.0058 5 6 4.2739 -0.0001 -0.0006 6 7 5.6731 -0.0001 -0.0001 7 6 6.4059 -0.4870 -1.1715 8 6 6.6613 0.6756 -2.1329 9 6 7.3971 0.1863 -3.3102 10 7 7.9659 -0.1911 -4.2182 11 6 6.3467 0.4477 1.0780 12 8 5.7432 0.7684 2.0799 13 6 7.8497 0.5500 1.0383 14 6 8.3601 1.0820 2.3789 15 6 9.8861 1.1854 2.3390 16 6 10.3965 1.7180 3.6794 17 6 11.8995 1.8204 3.6397 18 1 12.4370 1.5338 2.7479 19 6 12.5886 2.2790 4.7425 20 7 11.9342 2.6275 5.8287 21 14 14.4517 2.4052 4.6936 22 1 14.8439 3.7494 4.1990 23 1 14.9976 2.2017 6.0595 24 1 14.9946 1.3650 3.7834 25 6 3.5780 -1.2019 0.0047 26 6 2.1969 -1.1984 0.0043 27 1 -0.3633 0.0042 1.0278 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3634 -0.8920 -0.5102 30 1 1.6552 2.1327 0.0007 31 1 4.1164 2.1380 -0.0101 32 1 7.3582 -0.9115 -0.8537 33 1 5.8170 -1.2530 -1.6760 34 1 5.7090 1.1001 -2.4506 35 1 7.2502 1.4416 -1.6284 36 1 8.2762 -0.4357 0.8521 37 1 8.1466 1.2310 0.2407 38 1 7.9337 2.0677 2.5647 39 1 8.0632 0.4014 3.1768 40 1 10.3123 0.1995 2.1533 41 1 10.1834 1.8659 1.5411 42 1 9.9704 2.7041 3.8645 43 1 10.0992 1.0379 4.4776 44 1 12.4189 2.9505 6.6043 45 1 4.1162 -2.1383 0.0092 46 1 1.6551 -2.1327 0.0089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813427596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:00 Heat of formation + Delta-G solvation = -6.561817 kcal Electronic energy + Delta-G solvation = -24767.119174 eV Core-core repulsion = 21234.945053 eV Total energy + Delta-G solvation = -3532.174121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90583 -38.96397 -37.38447 -36.08332 -34.99398 -33.11523 -32.47316 -31.25680 -31.07012 -29.79554 -27.01936 -25.59725 -24.71855 -22.92149 -22.80018 -21.39260 -20.06383 -19.46194 -18.19978 -17.57276 -16.81761 -16.16654 -16.08020 -15.71224 -15.46380 -15.27095 -14.60380 -14.40015 -14.37783 -14.06073 -13.84309 -13.73844 -13.62089 -13.02641 -12.96993 -12.71009 -12.64550 -12.40006 -12.24636 -12.17892 -11.83720 -11.68613 -11.60943 -11.54002 -11.38976 -10.98605 -10.56503 -10.51634 -10.43597 -9.96211 -9.64370 -9.56122 -9.24689 -9.21461 -8.99946 -8.56653 -8.31078 -5.95904 -3.98377 0.94624 1.12744 2.24046 2.44051 2.51575 2.64562 3.33730 3.38904 3.40000 3.43075 3.67695 4.31927 4.42442 4.48013 4.54791 4.57689 4.61578 4.71277 4.81350 5.00740 5.05153 5.11430 5.19727 5.23243 5.27626 5.29430 5.34248 5.39580 5.42290 5.60541 5.74805 5.76618 5.98451 6.08100 6.17576 6.24526 6.30374 6.32387 6.50051 6.78569 6.79913 6.94265 7.03370 7.18450 7.19719 7.73181 7.88584 8.03982 8.05698 8.46945 9.09355 9.65356 11.15368 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002486 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.764669 B =11261.289256 C =12763.257024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.110 4.110 4 C -0.103 4.103 5 C 0.138 3.862 6 N -0.580 5.580 7 C 0.116 3.884 8 C -0.049 4.049 9 C 0.209 3.791 10 N -0.428 5.428 11 C 0.516 3.484 12 O -0.510 6.510 13 C -0.139 4.139 14 C -0.105 4.105 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.116 4.116 26 C -0.112 4.112 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.125 0.875 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.891 -6.558 -16.805 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.128 4.128 4 C -0.122 4.122 5 C 0.048 3.952 6 N -0.311 5.311 7 C -0.008 4.008 8 C -0.090 4.090 9 C -0.110 4.110 10 N -0.105 5.105 11 C 0.306 3.694 12 O -0.382 6.382 13 C -0.179 4.179 14 C -0.143 4.143 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.136 4.136 26 C -0.130 4.130 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.143 0.857 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.297 -6.877 -17.397 29.105 hybrid contribution 0.897 0.282 0.373 1.011 sum -21.400 -6.595 -17.024 28.130 Atomic orbital electron populations 1.20799 0.91114 1.02739 1.02486 1.19971 0.96207 0.93151 0.99565 1.20925 0.93552 0.97751 1.00598 1.21245 0.94297 0.97436 0.99271 1.17543 0.82494 0.93250 1.01956 1.45624 1.03628 1.65683 1.16144 1.21551 0.98771 0.94989 0.85471 1.19776 1.00575 0.99980 0.88714 1.28846 0.93774 0.93968 0.94420 1.81282 1.09515 1.08298 1.11378 1.21316 0.90875 0.75558 0.81614 1.90754 1.70392 1.46430 1.30671 1.21922 0.89547 1.03796 1.02606 1.21486 0.97445 1.01594 0.93726 1.21650 0.91732 1.00220 1.01178 1.19093 0.95409 0.96276 0.90945 1.21276 0.92297 1.43170 0.99113 0.92762 1.25043 0.98320 0.95610 0.95609 1.69971 1.35423 1.44461 1.03578 0.86618 0.85932 0.78366 0.77212 1.20708 1.21260 1.19929 1.21208 0.94373 0.97294 1.00679 1.20891 0.93498 0.97710 1.00917 0.91050 0.91500 0.91555 0.85690 0.85745 0.88341 0.89021 0.86825 0.86549 0.88788 0.88807 0.91662 0.91695 0.93433 0.93422 0.96584 0.96585 0.93038 0.85744 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.09 -0.69 5.88 -104.59 -0.62 -1.30 16 3 C -0.11 -0.91 9.69 -39.61 -0.38 -1.30 16 4 C -0.10 -0.97 9.54 -39.40 -0.38 -1.35 16 5 C 0.14 1.32 4.76 -83.70 -0.40 0.92 16 6 N -0.58 -5.16 2.52 -113.46 -0.29 -5.45 16 7 C 0.12 0.64 5.08 -4.04 -0.02 0.62 16 8 C -0.05 -0.23 6.02 -29.52 -0.18 -0.41 16 9 C 0.21 1.61 15.43 -20.76 -0.32 1.29 16 10 N -0.43 -4.80 18.54 42.15 0.78 -4.02 16 11 C 0.52 6.37 7.52 -10.99 -0.08 6.29 16 12 O -0.51 -8.64 15.73 5.55 0.09 -8.56 16 13 C -0.14 -1.60 4.37 -27.88 -0.12 -1.72 16 14 C -0.10 -1.74 4.50 -26.73 -0.12 -1.86 16 15 C -0.11 -2.17 5.15 -26.73 -0.14 -2.30 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.12 -1.00 9.68 -39.39 -0.38 -1.38 16 26 C -0.11 -0.87 9.69 -39.61 -0.38 -1.25 16 27 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.10 0.48 6.47 -51.93 -0.34 0.15 16 33 H 0.09 0.40 7.85 -51.93 -0.41 -0.01 16 34 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.12 0.48 6.95 -51.93 -0.36 0.12 16 36 H 0.09 0.91 7.26 -51.93 -0.38 0.54 16 37 H 0.09 0.85 6.95 -51.93 -0.36 0.49 16 38 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 39 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 45 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -35.93 392.80 -8.78 -44.71 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -7.29 Total: -5.56 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -3.71 Total: -17.25 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 1.23 Total: -36.05 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.93 -8.78 -44.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813427596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.148 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds